Mmel064049.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Melolontha melolontha
Gene Symbol
-
Assembly
GCA_935421255.1
Location
CAKXYX010000534.1:334639-336975[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0048 0.56 14.2 3.8 1 23 30 53 30 53 0.96
2 25 0.18 21 9.2 6.9 1 23 91 114 91 114 0.95
3 25 0.18 21 9.3 3.8 1 23 120 143 120 143 0.98
4 25 2.6 3.1e+02 5.6 0.7 10 23 154 168 152 168 0.90
5 25 7.5e-06 0.00087 23.0 0.8 1 23 174 197 174 197 0.96
6 25 2.7 3.2e+02 5.5 0.9 10 23 212 226 203 226 0.83
7 25 4.9e-05 0.0058 20.5 1.4 1 23 232 255 232 255 0.98
8 25 0.0056 0.65 14.0 3.9 1 23 261 284 261 284 0.98
9 25 6.5e-06 0.00075 23.2 2.0 1 23 290 313 290 313 0.98
10 25 0.0028 0.33 14.9 0.6 1 23 318 341 318 341 0.98
11 25 0.00059 0.069 17.1 3.4 1 23 347 370 347 370 0.98
12 25 0.36 42 8.3 0.5 8 23 383 399 376 399 0.84
13 25 0.00077 0.09 16.7 1.1 1 23 404 427 404 427 0.98
14 25 0.00094 0.11 16.4 0.8 1 23 433 456 433 456 0.98
15 25 0.016 1.9 12.6 2.8 1 23 462 485 462 485 0.96
16 25 6e-05 0.007 20.2 1.9 1 23 491 514 491 514 0.98
17 25 0.0032 0.37 14.8 0.7 1 23 519 542 519 542 0.97
18 25 0.00025 0.029 18.2 1.5 1 23 548 571 548 571 0.98
19 25 0.00079 0.092 16.7 1.5 1 23 577 600 577 600 0.98
20 25 0.00028 0.033 18.1 1.4 1 23 606 629 606 629 0.98
21 25 0.00025 0.029 18.2 1.5 1 23 635 658 635 658 0.98
22 25 0.0012 0.15 16.0 3.3 1 23 664 686 664 686 0.99
23 25 0.0024 0.28 15.2 1.3 1 23 692 715 692 715 0.98
24 25 0.019 2.2 12.3 1.6 1 23 721 744 721 744 0.97
25 25 0.0029 0.34 14.9 5.5 1 23 750 773 750 773 0.98

Sequence Information

Coding Sequence
ATGTACAAATGTACACAATGCAAGTTCAGAACAAAATACGATGTCGACTTCAGGCACCATTCCAATGAACATTACCATGTGAAAATGTACAAATGTAGAATTTGTCACAGGAGATACAATACGAACATATCTCTCAAGACGCACGTGGAAAAAACTCATGTTGATAATGCAAGAAGAAATGTCCAGGAATACTCTTTGTGTGATTATTTCAAAACTAATATTAAACATATACAAGAGGGATCTACACATTCAGAAGGCGGTGAAAAACAATATTTATGCCCGAAATGTAAATTTCAAACGAGGAACAAATGTCACTTAAAATCACATATAAAAGTCAAACATCTGAGCAGACGCAAATATAAGTGCGCAAATTGCGAGTTTAAGACATATTACAGGACTTATTTAAAAATGCACATGAAAATGAAACATCTCATGGAAAATGATTATAACTGCTTCAAGACAAAGAACAAATCAAATTTAAACGCACACGTAAAAAGAAAACATCTCAAAGTAACCGATTATAAATGCCCAGACTGTGAATACAAAACAAATGACAAGTCAAATTTAAAAAAACACATAAAGGGCATACATTTTAAAGAACACGATTATAAATGTTCAGAGTATGAATACAAGACATATCATACGTCAACTTTAAAAAGACACATAAAGACAATTCATTTTAAAGAACATGATTATAAATGCGAAGAGTGTGAATATAAGACAAATGACAAGACAAATTTAAAAAATCACATAAAGACAATACATCTTAAAGTAAGCGATTATAAATGCACAAGCTGTGAATACAAGACAAATTACAAGACAAGTTTAAAGAAGCACATAAAGACAATGCATCTTAAAGAACACGATTATAAATGCACAGAGTGTGAATACAAGACAAATGACAAATCAAATTTAAAAAGACACATAAAGACAATACATAAAGAACACGGTTATAATTGTGCAGAGTGTGAATATAAGACAAATGAAAAGGCAAATTTAAAAACACACATCAAGACATTACATCTTAAAGTATGCGATTACAAGTGTACAGAGTGTGAATACAAGACAAATTACAAGACAAGTTTAAAGAAGCACATAAAGACAATGCATCTTAAAGAACACGATTATAAATGCACAGAATATCAATACAAGACAAATGACAAAACAAATTTAAAAAGACACATAAAGACAATACATAAAGAACACGGTTATAATTGTGCAGAGTGTGAATACAAGACAAATGACAAGACAAGTTTAAAAAAGCACATAAAGACAATACATCTTAAAGTAAGCGATTACAAGTGTGCAGAGTGTGAATACAAGACAAATTACAGGATAAATTTAGAAAAACACATAAAGACAATACATCTTAAAGTAAGCGATTATAAATGCACAAGCTGTGAATACAAGACAAATTACAAGACAAGTTTAAAGAAGCACATAAAGGCAATGCATCTTAAAGAACACGATTATAAATGCACAGAGTGTGAATACAAGACAAGTGTCAAAACAAATTTAAAAAGACACATAAAGACAATACATAAAGAACACGGTTATAATTGTGTAGAGTGTGAATATAAGACAAATGACAGGACAGGTTTAAAAAAACACATCAAGACAATACATCTTAAAGTATGCGATTACAAGTGTACAGAGTGTGAATACAAGACAAATTACAAGATAAATTTAGAAAAACACATAAAGACAATACATCTTAAAGTAAGCGATTATAAGTGTGCAGAGTGTGAATACAAGACAAATCACTCAGCAGCTCTAAAAAGACACATCAAGAGAATACATTTTAAAGAACAGGATTATAAATGCGACGAGTGTGTATATAAGACAAATGACAAGACAAATTTAAAAACACACATCAAGACAATACATCTTAAAGTATGCGATTACAAGTGTACAGAGTGTGAATACAAGACAAATTACAAGATAAATTTAGAAAAACACATAAAGACAATACATCTTAAAGTAAGCGATTATAAGTGTACAGAGTGTGAATACAAGACAAATTACAAGTCAAATTTCAAAAACCACGTAAAAATACATCTGAAAGTAAGCGATTATAAATGCACAAGCTGTGAATACAAGGCAAATTACAAGATAAATTTAGAAAGACACATGAAGACAATACATCTTAAAGAACATGATTTTAAATGCATAGAGTGTGAATACAAGACAAATGACAAGCAAAATTTAAAAATACACATAAAGACAAAACATCTTAAAGAAAATGATTTTAAATGCACAGAGTGTGAATACAAGACAAACAACAAATCACATTTTGAAAGACACACGAAGAGAATACATCTTAAAGAATACGAATAG
Protein Sequence
MYKCTQCKFRTKYDVDFRHHSNEHYHVKMYKCRICHRRYNTNISLKTHVEKTHVDNARRNVQEYSLCDYFKTNIKHIQEGSTHSEGGEKQYLCPKCKFQTRNKCHLKSHIKVKHLSRRKYKCANCEFKTYYRTYLKMHMKMKHLMENDYNCFKTKNKSNLNAHVKRKHLKVTDYKCPDCEYKTNDKSNLKKHIKGIHFKEHDYKCSEYEYKTYHTSTLKRHIKTIHFKEHDYKCEECEYKTNDKTNLKNHIKTIHLKVSDYKCTSCEYKTNYKTSLKKHIKTMHLKEHDYKCTECEYKTNDKSNLKRHIKTIHKEHGYNCAECEYKTNEKANLKTHIKTLHLKVCDYKCTECEYKTNYKTSLKKHIKTMHLKEHDYKCTEYQYKTNDKTNLKRHIKTIHKEHGYNCAECEYKTNDKTSLKKHIKTIHLKVSDYKCAECEYKTNYRINLEKHIKTIHLKVSDYKCTSCEYKTNYKTSLKKHIKAMHLKEHDYKCTECEYKTSVKTNLKRHIKTIHKEHGYNCVECEYKTNDRTGLKKHIKTIHLKVCDYKCTECEYKTNYKINLEKHIKTIHLKVSDYKCAECEYKTNHSAALKRHIKRIHFKEQDYKCDECVYKTNDKTNLKTHIKTIHLKVCDYKCTECEYKTNYKINLEKHIKTIHLKVSDYKCTECEYKTNYKSNFKNHVKIHLKVSDYKCTSCEYKANYKINLERHMKTIHLKEHDFKCIECEYKTNDKQNLKIHIKTKHLKENDFKCTECEYKTNNKSHFERHTKRIHLKEYE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-