Mmel197308.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010005974.1:3379962-3383209[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 0.00055 0.064 17.2 1.1 1 23 19 42 19 42 0.96 2 33 0.038 4.4 11.4 2.4 1 23 108 131 108 131 0.97 3 33 0.0014 0.16 15.9 1.0 1 23 137 160 137 160 0.96 4 33 0.24 28 8.8 2.8 1 23 166 189 166 189 0.96 5 33 0.0025 0.3 15.1 0.8 1 23 195 218 195 218 0.96 6 33 0.023 2.7 12.1 4.5 2 23 238 260 237 260 0.95 7 33 0.0013 0.15 16.0 2.4 1 23 266 289 266 289 0.94 8 33 0.58 68 7.6 5.4 1 23 295 318 295 318 0.96 9 33 0.005 0.58 14.1 2.9 1 23 324 347 324 347 0.96 10 33 0.074 8.6 10.5 0.2 1 23 353 376 353 376 0.95 11 33 0.002 0.23 15.4 1.6 1 23 382 405 382 405 0.98 12 33 0.00067 0.078 16.9 0.9 1 23 411 434 411 434 0.98 13 33 0.19 23 9.1 1.4 1 23 440 463 440 463 0.98 14 33 0.0049 0.57 14.2 1.1 1 23 469 492 469 492 0.96 15 33 0.0099 1.2 13.2 0.7 1 23 498 521 498 521 0.98 16 33 0.00085 0.099 16.6 1.1 1 23 527 550 527 550 0.96 17 33 0.006 0.69 13.9 1.2 1 23 556 579 556 579 0.98 18 33 0.0014 0.16 15.9 1.7 1 23 598 621 598 621 0.98 19 33 0.049 5.7 11.0 1.9 1 23 627 650 627 650 0.97 20 33 0.0039 0.45 14.5 0.9 1 23 656 679 656 679 0.96 21 33 0.018 2.1 12.4 1.0 1 23 685 708 685 708 0.96 22 33 0.0021 0.24 15.3 0.7 1 23 714 737 714 737 0.96 23 33 0.017 2 12.5 0.4 1 23 743 766 743 766 0.98 24 33 0.0039 0.45 14.5 0.9 1 23 772 795 772 795 0.96 25 33 0.018 2.1 12.4 1.0 1 23 801 824 801 824 0.96 26 33 0.0027 0.31 15.0 0.5 1 23 830 853 830 853 0.96 27 33 0.018 2.1 12.4 1.0 1 23 859 882 859 882 0.96 28 33 0.014 1.7 12.7 0.4 1 23 888 911 888 911 0.96 29 33 0.15 17 9.5 1.2 1 23 917 940 917 940 0.96 30 33 0.67 78 7.5 0.3 1 21 946 966 946 967 0.96 31 33 0.24 28 8.9 1.3 1 23 972 994 972 994 0.97 32 33 0.13 16 9.7 0.7 1 23 1000 1023 1000 1023 0.96 33 33 0.0013 0.15 16.0 1.9 1 23 1029 1052 1029 1052 0.98
Sequence Information
- Coding Sequence
- ATGTACAACGCCGACTTCAGGCACCACGCTAGCGAGCATTACAAGGTGAAAATGTACAAATGTGGAATTTGTGACCGAAGATATAAGGGGAAGAAATCTCTCAAGACGCACGTGGAGAAAATTCATATTAACAATGAAGGAAGAGATATCCAAAAATATTCTGCGTGTGACTGTTCCAATGCTAATAGAAATACAAAGGAGATAACTACATATTCACAAGATGGTCAAAAACAATGTGAATACGCGAAATACAAGTTTCAAACAAGATACAAATGTCACTTAAAATCACTTATAAAAATAGAAGATTTGGACAGGGGCAAATATAAGTGCGCAAATTGCGAGTTTAAGACGTATTACAGGACTTACTTAGAGAGGCACATGAAAATAAACCACCTTATGAAAAGTAATTATAAATGCCCAGAGTGTGAATTCAAGACAAACGTCAAATCATACTTGCAAAGGCACTTAAAAGCAATGCATAAGAAACAAAATAATTATAAATGCTGTGAGTGTGAATACAAGACGAATTTTAAGCCATATTTGCAAAGACACGTAGGAACAATACATGTGACACAGTATGATTATAAATGCTCTGATTGTGAATACGAGACAAACGAGAAATCAAATTTCCAAAGACATGTGAAAGCAATACATCTGAAACCGAAGTCAAGTTTAAATCAACGCATAAAACATCTGAAACGACATGATTGTAAATGCTCAGAGTGCGAATTCAAGACAAAGTACAAGTCAAGTTTAGAAAAACATCTAAAAGTACAACATCTGAAACAAATAGATTATAAATGCACAAAGTGTGAATACAAGACAAAATACAATTCAAATTTAAAAACTCACATAATAGCAAAACATGTGAAACGAAATGATTATAAATGCACAGAGTGTGTATACAGGACAAATTACAAGTCATGTTTGCATGTACACATAAAAGCTAAACATGAGAAACAGTATGATTATAAATGCACAGAGTGTGAATTCAAGACAAACTTCAAGGCACAGTTAAAAAAACACATGAAAGCAAAACATCTGAAACAGTTTGATTATATTTGCGCAGAGTGTGAATACAAGACAAACTACAAAGCAGAGTTAGAAATGCACATAAAAGCAAGACATCTGAAACAGTTTGATTACAAATGCAGAGCGTGTGAATACAAGACAAGCAAAAAATCACAATTAAAAGCTCACATAAAAACAATACATCTGAAACAGTATGATTATAATTGTACAGAGTGTGATTACGGGACAAGCAAAAAAATACAATTAAAAGCTCACATAAAAACAAAACATCTGAAACAGTTTGATTATAAATGCACAGAGTGTGAATATAAAACAAACCTCGAGAGACTTTTGGGAAGACACATAAAACGAAAACATCTGGAACAGTACGATTATAAATGCACAGAGTGTGAATACAGGACGAGCTACAACGCACAGTTAGATACACACATGAAAGCAAAACATCTTAAAGAATATGATTATAAATGCACAGAGTGTGAATACGAGACAAATTACAAGGCTCCATTAGAAACACATATTAAAACAAAACATCTGAAACAGTATGATTATAAATGCACAGAGTGTGAATACAGGACGAGCTACAACGCACAGTTAGAAACACACATGAAAGCAAAACATCTTAAAGAATATGATTATAAATGCACAGAGTGTGAATACGCGACAAATTACAAAGCTCGATTAGAAACACATATTAAAACAAAACATCTGAAACAGTATGATTATAAATGCGCAGAGTCAAAACATCTGAAACAGTATGATTATAAATGCGCAGAGTGTGAATACGCGACAAGCTACAAGGTACACTTAGAAACACACATTAAAACAAAACATCTGAAACAATATGATTATAAATGCATAGAGTGTGAATACGCGACAAGCTACAAGGTACACTTAGAAACACACATTAAAACAAAACATCTGAAACAATATGATTATAAATGCACAAAGTGCGAATACGAGACGAGCTACAAGGCACAGTTAGAAACACACATTCAAGCAAAACATCTAAAACCGTATAATTATAAATGCACAGAGTGTGAATTCAGGACAAACTACAAGGCAAGTTTAGAAATGCACATAAAAGCAAAACATCTGAAACAATATGATTATAAATGCACAGAGTGTGAATACGAGACAAGCTACAAGGCACAGTTAGAAACACACATTAAAGCAAAACATCTGAAACAATATGATTATAAATGCGCAGAGTGTGAATACGCGACAAGTTACAAGGTAGTGTTAGAAACGCACATTAAAACAAAACATCTGAAACAATATGATTATAAATGCACAAAGTGCGAATACGAGACGAGCTACAAGGCACAGTTAGAAACACACATTCAAGCAAAACATCTAAAACCGTATAATTATAAATGCACAGAGTGTGAATTCAGGACAAACTACAAGGCAAGTTTAGAAATGCACATAAAAGCAAAACATCTGAAACAGTATGATTATAAATGCACAGAGTGCGAATACGAGACGAGCTACAAGGCACAGTTAGAAACACACATTCAAGCAAAACATCTAAAACCGTATAATTATAAATGCACAGAGTGTGAATTCAGGACAAACTACAAGGCAAGTTTAGAAATGCACATAAAAGCAAAACATCTGAAACAGTATGATTATAAATGCACAGAGTGCGAATACGAGGCGAGCTACAAGGTACAGTTAGAAACACACATTAAAGCAAAACATCTGAAACAGTATAATTATAAATGCACAGAGTGTGAATTCAGGACAAACTACAAGGCACGTTTAGAAATGCACATAAAAGCAAAACATCTGAAACAGTATGATTATAAATGCACAAACTGTGAATTCAAGACAAACCTCAAGCCAAGTTTAGAAACACACATAAAAGCTAAAGAATGTGATTATAACTGCGTAGTGTGTGAATACAAGACGAATAAGAAGTTAAATTTGCGACTACACATAACAAAACATCTGGAACAGTATGATCATAAATGCACAGAGTGTGAATACAAGACAAATTACAAACCAGCTTTAGAAGGACACATTAAATTAATACATCTGAGACAAAATGATTATAAATGCGTAGTGTGTGAATTCAAGACAAACCTCAAGTCAAATTTAGAAAGACATATGAAAACAAAACACCTTAACCCTCTAGTTCCCAAGACCGCCTCGAGGCGCATATTATAG
- Protein Sequence
- MYNADFRHHASEHYKVKMYKCGICDRRYKGKKSLKTHVEKIHINNEGRDIQKYSACDCSNANRNTKEITTYSQDGQKQCEYAKYKFQTRYKCHLKSLIKIEDLDRGKYKCANCEFKTYYRTYLERHMKINHLMKSNYKCPECEFKTNVKSYLQRHLKAMHKKQNNYKCCECEYKTNFKPYLQRHVGTIHVTQYDYKCSDCEYETNEKSNFQRHVKAIHLKPKSSLNQRIKHLKRHDCKCSECEFKTKYKSSLEKHLKVQHLKQIDYKCTKCEYKTKYNSNLKTHIIAKHVKRNDYKCTECVYRTNYKSCLHVHIKAKHEKQYDYKCTECEFKTNFKAQLKKHMKAKHLKQFDYICAECEYKTNYKAELEMHIKARHLKQFDYKCRACEYKTSKKSQLKAHIKTIHLKQYDYNCTECDYGTSKKIQLKAHIKTKHLKQFDYKCTECEYKTNLERLLGRHIKRKHLEQYDYKCTECEYRTSYNAQLDTHMKAKHLKEYDYKCTECEYETNYKAPLETHIKTKHLKQYDYKCTECEYRTSYNAQLETHMKAKHLKEYDYKCTECEYATNYKARLETHIKTKHLKQYDYKCAESKHLKQYDYKCAECEYATSYKVHLETHIKTKHLKQYDYKCIECEYATSYKVHLETHIKTKHLKQYDYKCTKCEYETSYKAQLETHIQAKHLKPYNYKCTECEFRTNYKASLEMHIKAKHLKQYDYKCTECEYETSYKAQLETHIKAKHLKQYDYKCAECEYATSYKVVLETHIKTKHLKQYDYKCTKCEYETSYKAQLETHIQAKHLKPYNYKCTECEFRTNYKASLEMHIKAKHLKQYDYKCTECEYETSYKAQLETHIQAKHLKPYNYKCTECEFRTNYKASLEMHIKAKHLKQYDYKCTECEYEASYKVQLETHIKAKHLKQYNYKCTECEFRTNYKARLEMHIKAKHLKQYDYKCTNCEFKTNLKPSLETHIKAKECDYNCVVCEYKTNKKLNLRLHITKHLEQYDHKCTECEYKTNYKPALEGHIKLIHLRQNDYKCVVCEFKTNLKSNLERHMKTKHLNPLVPKTASRRIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -