Mmel064122.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000534.1:713241-716018[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.0052 0.61 14.1 5.9 1 23 19 42 19 42 0.96 2 29 5.4 6.3e+02 4.6 2.5 1 23 109 132 109 132 0.97 3 29 0.0075 0.87 13.6 2.5 1 23 138 161 138 161 0.98 4 29 0.0041 0.48 14.4 1.5 2 23 168 190 167 190 0.97 5 29 0.00062 0.072 17.0 0.9 1 23 196 219 196 219 0.98 6 29 0.00048 0.056 17.4 2.9 1 23 225 248 225 248 0.98 7 29 3.2 3.7e+02 5.3 1.2 1 23 254 277 254 277 0.97 8 29 0.065 7.6 10.6 2.5 1 23 283 306 283 306 0.98 9 29 0.00085 0.099 16.6 2.4 1 23 312 335 312 335 0.98 10 29 0.72 83 7.4 4.6 1 23 341 364 341 364 0.97 11 29 0.00024 0.027 18.3 0.5 1 23 370 393 370 393 0.98 12 29 3.2e-05 0.0037 21.1 0.4 1 23 399 422 399 422 0.98 13 29 0.00089 0.1 16.5 1.2 1 23 428 451 428 451 0.98 14 29 0.0026 0.3 15.0 1.8 1 23 457 480 457 480 0.98 15 29 0.14 16 9.6 0.7 1 23 486 509 486 509 0.97 16 29 0.00086 0.1 16.5 2.6 1 23 515 538 515 538 0.98 17 29 0.054 6.3 10.9 2.1 1 23 544 567 544 567 0.98 18 29 8.5e-05 0.0099 19.7 0.6 1 23 573 596 573 596 0.98 19 29 0.00037 0.043 17.7 2.4 1 23 602 625 602 625 0.98 20 29 0.0046 0.53 14.3 1.8 1 23 631 654 631 654 0.98 21 29 3.8e-05 0.0044 20.8 2.8 1 23 660 683 660 683 0.98 22 29 0.011 1.2 13.1 2.2 1 23 689 712 689 712 0.98 23 29 0.00018 0.021 18.7 0.5 1 23 718 741 718 741 0.98 24 29 0.00018 0.021 18.7 2.9 1 23 747 770 747 770 0.98 25 29 2.1e-05 0.0025 21.6 1.7 1 23 776 799 776 799 0.98 26 29 0.0096 1.1 13.3 2.0 1 23 805 828 805 828 0.98 27 29 0.0038 0.45 14.5 1.4 1 23 834 857 834 857 0.98 28 29 0.013 1.5 12.8 1.8 1 23 863 886 863 886 0.98 29 29 0.00029 0.033 18.1 3.3 1 23 892 915 892 915 0.98
Sequence Information
- Coding Sequence
- ATGTACAAAGCCGATTTCAGGCACCACGCTAACAAACATTACCAGGTGAAGATGCACAAATGTAGAATTTGTCACAGAAGATACAAGACGAAGGAATCTCTCAAGATGCACTTGGAAAAAGTTCATGAAAGCAATAAAGGAAGAGATATCAAAAAATTCTCTACGTCTTACAACTTTAAAGCCAGTATTAAAAATATAAAAAAGAGATTTTCACACTCACGTGATAGCAAAAAACAATGCCAGTCCTCGATATCTAAGTTTCAAACGAGGGACAAATGTCACTTAAAATCATTTATAAAAATAAAACATCTGAGCGGAGGCAAATATAAGTGCGCAAGTTGCGAGTTTAAGACATATTACAGGTCTCGTTTAGAAATGCACACGAAAATGAATCATCTCGTGGAAAGTTATTATAAATGCATGGAGTGTCAATTCCAGACGAACTTCAAATCAAGTTTGGAAGTACACATGAAGACAAAACATCTGAAACAAAAGAATAATAAATGTCCAGAGTGTGAATTCAGGACAAACAACAGGTCATACTTAAAAATACATGTGAAAACGAAACATCTGAAAGAATACAATTATAATTGCGCAGTGTGTGAATACAAGACACGCAACAAGTCATCGTTAGGAAGACATATGAAGACAATACATGTTGCAGTAAGCGATTATAAATGTGCAAAGTGTGACTTTATGACAAATGACAAGTCACATTTAAAAGCACACGTAAAGACAACACATCTTAAAGAATACAATTATAAATGCATAGATTGTGAATACAAGACAAATAAAAAGTTACGTTTGAAAGCACACGTAAAGACAATACATCTTAAAGAATATGATTATAAATGTACAGCGTGTGAATACAAAACAAATAAGATGTCAAATTTTGAAAGACACACAAAGACAATACATCTTAAAGAACACGATTATAAATGCACAGAATGTGAATACAAGACAAATAACAAATTACATTTAAACGCACACATAAAGACAATACATCTTAAAGAATACGATTATAAATGTACAGCGTGTGAATACAAGACAAATAGGAAGTTACATTTTGAAAAACACACAAAGTCAATACATCTTAAGGAACACGAATATAAATGCGCGGACTGTGAACTCAAGACAAATGAGAAGTCAAATTTAGAAAAACACATAAAGACAATACATCTCAAAGAACACGATTATAAATGCGCAGAATGTGAATACGAGACAAACGACAAATCAAATTTAGAAAGACACATAAAGACAATACATCTTAAAGAACACGACTATAAGTGCTCAGAGTGTGAATACATGACAAACAAGAAGCCTAGTTTAAAACAGCACATAAAGACAATACATCTTAAAGTAAGTGATTACAAATGCACAAGCTGTGAATATAAGACAAATTACAAGATAAATTTAGAAAAGCACATAAAGACAATACATCTTAAAGAACATGATTATAAATGCATAGAGTGTGAATACAAGACAAACAACAAATTACTTTTAAAAGTACACATAAAGACAATACATCTTAAACAACACGATTATAAATGCACAGAGTGTGAGTACAAAACAAATGTCAAGACACATTTAAAAGCACACATAAAAACAATACATCTTAAAGAATACAATTATAAATGCACAGCATGTGAATACAAGACAAATAAGAAGTTAAATTTAGAAAAACACACAAAGACAATACATCTTAAAGAACACGAATATAAATGCGTAGAGTGTGAATTCATGACAAATGACAAGTCAAATTTAGAAAAACACATAAAGACTATACACCTTAAAGAACACGATTATAAATGCGTAGAGTGTGAATACAAAACAAATAACAAGTCACATTTAAAAGCACACGTAAAGACAATACATCTTAAAGAATACGATTATAAATGTACAGCCTGTGAATACAAGACAAATAAGATGTCAAATTTAGAAAGACATATAAAGACGACACATCTTAAAGAACACGATTATAAATGCACAGAGTGTGAATATAAAACAAATAACAAGTCACATTTACAAGCACACATAAAGACGATACATCTTAAAGAATACGATTATAAATGTACAGTGTGTGAATACAAGACAAATAAGAAGTTAAATTTAGAAAAACACACAAAATCAATACATCTTAAAGAACACGTCTATAAATGCCCGGAGTGTGAACTCAAAACAAATGAGAAGACAAATTTAGAAAAACACATAAAGACAATACATCTTAAAGAGCACGATTATAAATGCGACGAGTGTCAATTCAGGACAAATAGCAGGTCACATTTAAGAGCACACATAAAGACAATACATCTCAAAGAATACGATTATAAATGCACAGAGTGTGAATACAAGACAAATAGAAAGTCAAATTTAGAAACACACATCAAGACAATACATCTTAAAGTGCACGATTATAAATGCACAGCATGTGAATACAAGACATATAGGATGTCAAATTTAGAAAAACACACAAAGACCATACATCTTAAAGTTCACGATTATAAATGCACAGCATGTGAATACAAGACAAATAATATGTCAAATTTAGAAAGGCACACCAAGACAATACATCTTAAGGAATACGATTATAAATGCACAGCGTGTGAATACAAGACAAATAAGATGTCAAATTTAGAAAGGCACACCAAGACAATACATCTTAAAGAACACGGTTATAAATGCACAGAATGTGAATACAAGACAAATAAGAAGTCAAACTTAGAAAAACACACAAAGACAATGCATCTTAAATTAAGCGACTATAAATGCGCTGCGTGA
- Protein Sequence
- MYKADFRHHANKHYQVKMHKCRICHRRYKTKESLKMHLEKVHESNKGRDIKKFSTSYNFKASIKNIKKRFSHSRDSKKQCQSSISKFQTRDKCHLKSFIKIKHLSGGKYKCASCEFKTYYRSRLEMHTKMNHLVESYYKCMECQFQTNFKSSLEVHMKTKHLKQKNNKCPECEFRTNNRSYLKIHVKTKHLKEYNYNCAVCEYKTRNKSSLGRHMKTIHVAVSDYKCAKCDFMTNDKSHLKAHVKTTHLKEYNYKCIDCEYKTNKKLRLKAHVKTIHLKEYDYKCTACEYKTNKMSNFERHTKTIHLKEHDYKCTECEYKTNNKLHLNAHIKTIHLKEYDYKCTACEYKTNRKLHFEKHTKSIHLKEHEYKCADCELKTNEKSNLEKHIKTIHLKEHDYKCAECEYETNDKSNLERHIKTIHLKEHDYKCSECEYMTNKKPSLKQHIKTIHLKVSDYKCTSCEYKTNYKINLEKHIKTIHLKEHDYKCIECEYKTNNKLLLKVHIKTIHLKQHDYKCTECEYKTNVKTHLKAHIKTIHLKEYNYKCTACEYKTNKKLNLEKHTKTIHLKEHEYKCVECEFMTNDKSNLEKHIKTIHLKEHDYKCVECEYKTNNKSHLKAHVKTIHLKEYDYKCTACEYKTNKMSNLERHIKTTHLKEHDYKCTECEYKTNNKSHLQAHIKTIHLKEYDYKCTVCEYKTNKKLNLEKHTKSIHLKEHVYKCPECELKTNEKTNLEKHIKTIHLKEHDYKCDECQFRTNSRSHLRAHIKTIHLKEYDYKCTECEYKTNRKSNLETHIKTIHLKVHDYKCTACEYKTYRMSNLEKHTKTIHLKVHDYKCTACEYKTNNMSNLERHTKTIHLKEYDYKCTACEYKTNKMSNLERHTKTIHLKEHGYKCTECEYKTNKKSNLEKHTKTMHLKLSDYKCAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -