Mmel132536.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010001380.1:252088-254499[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.00014 0.017 19.0 0.6 1 23 19 42 19 42 0.97 2 25 0.15 18 9.5 2.9 1 23 103 126 103 126 0.97 3 25 0.0072 0.84 13.6 0.5 1 23 132 155 132 155 0.98 4 25 0.03 3.5 11.7 3.7 1 23 161 184 161 184 0.98 5 25 6.2e-05 0.0072 20.2 1.0 1 23 190 213 190 213 0.98 6 25 6.2e-05 0.0072 20.2 1.0 1 23 219 242 219 242 0.98 7 25 0.00012 0.014 19.2 2.3 1 23 248 271 248 271 0.98 8 25 0.00099 0.12 16.4 1.1 1 23 277 300 277 300 0.98 9 25 0.0007 0.082 16.8 2.3 1 23 306 329 306 329 0.98 10 25 0.00082 0.096 16.6 1.2 1 23 335 358 335 358 0.98 11 25 0.00072 0.083 16.8 0.9 1 23 364 387 364 387 0.98 12 25 0.00016 0.019 18.8 1.1 1 23 393 416 393 416 0.98 13 25 0.0067 0.78 13.7 0.7 1 23 422 445 422 445 0.98 14 25 0.00044 0.051 17.5 2.0 1 23 451 474 451 474 0.98 15 25 0.00037 0.043 17.7 1.6 1 23 480 503 480 503 0.98 16 25 0.00044 0.051 17.5 2.0 1 23 509 532 509 532 0.98 17 25 0.0031 0.36 14.8 0.8 1 23 538 561 538 561 0.98 18 25 0.00044 0.051 17.5 2.0 1 23 567 590 567 590 0.98 19 25 0.00044 0.051 17.5 2.0 1 23 596 619 596 619 0.98 20 25 0.00039 0.045 17.6 0.7 1 23 625 648 625 648 0.98 21 25 0.0014 0.17 15.9 3.8 1 23 654 677 654 678 0.97 22 25 0.0098 1.1 13.2 1.0 1 23 683 706 683 706 0.98 23 25 0.00015 0.018 18.9 2.0 1 23 712 735 712 735 0.98 24 25 5.7e-05 0.0067 20.3 1.7 1 23 741 764 741 764 0.98 25 25 0.0073 0.85 13.6 3.0 1 23 770 793 770 793 0.98
Sequence Information
- Coding Sequence
- ATGTACAACGCCGACTTCAGGCAACACACTTATGAGCATTACGGGGTGAAATTGTACAAATGTAGTATTTGTGACAGAAGATACAAGGCGAAGGAATCTCTCAAGGCGCACGTGGAAACAAATCATGCTGACAATGAAGGAACATGTGACCACTTCAAAGCTACTATTAAAAATATAAAACAGAGATCTCGACCCTTACAGCATGTTGGTGGAAAACTTTGTCAATGCTCAAAATGCAAGCCTCCAACAGGGTCCAAACGTTACCTAAAGCCACTTATAAAAATAAAACATCTAAACAGAGGCAAATATAAGTGCGCAAATTGCGAGTTTAAGACATATTACAGGACTTATTTGCAAATGCATATGAAGATAAAACATCTCATGGAATCTAATTATAAATGCATGGAGTGTGAATTCGAGACAGGTTACAAGTCAAGTTTACAAATACACATAAAAACAATACATCTGAAACAAAATTATTATAAATGCGCAGAGTGTAAATACAAGACGAGCTGCAAGCCAAATTTAAAAAGACACATAAAAACAATACATCTTAAAGTAAACGATTATAAATGCGAAGAGTGTGAATATATGACAAACTACAAGTCAAGTTTAGAAAAACACATAAAAACAATACATCTTAAAGTATGCGATTATAAATGCGAAGAGTGTGAATACATGACAAACTACAAGTCAAGTTTAGAAAAACACATAAAAACAATACATATTAAAGTATGCGATTATAAATGCAAAGAGTGTGAATACATGACAAACCACAAGCCAAATTTAGAAAAACACATAAAAACAATACACCTTAAAGTAAGGGATTATAAATGCGTAGAGTGTGAATACAAGACAGGCTACAAGTCAAATTTAGAAAGCCACATAAAAACAAGACATCTTAAAGTAAGCGATTATAAATGCGTAGAGTGTGAATACAAGACAAACCACAAGCCAAATTTAGAAAAACACATAAAAACAATGCATCTTAAAGTAAGCGATTATAAATGCGAAGAGTGTGAATACAAGACAGGCTACAAGTCAAGTTTAGAAAGCCACATAAAAACAAGACATCTTAAAGTAAGCGATTATAAATGCGTAGAGTGTGAATACATGACAAACTACAAGTCAAGTTTAGAAAAACACGTAAAAACAATACATCTTAAAGTATGCGATTATAAATGCGAAGAGTGTGAATACAAGACAGGCTACAAGTCAAATTTAGAAAAACACATAAAAAGAATACATCTTAAAGTGAGCGATTATAAATGCGAAGAGTGTGAATACAAGACAGGCTACAAGTCAAGTTTAGAAGGCCACATAAAATCAAGACATCTTAAAGTAAGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACCACAAGCCAAGTTTAGAAAAACACATAAAAACAATACATCTTAAAGTAAGCCATTATAAATGCGAAGAGTGTGAATACAAGACAGGCTACAAGTCAAGTTTAGAAAAACACATAAAAACAAGACATCTTAAAGTATGCGATTATAAATGTGAAGAGTGTGAATACAAGACAAACCACAAGCCAAGTTTAGAAAAACACATAAAAACAATACATCTTAAAGTGAGCGATTATAAATGCGAAGAGTGTGAATACAAGACAGGCTACAAGTCAAGTTTAGAAGGCCACATAAAAACAAGACATCTTAAAGTAAGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACCACAAGCCAAGTTTAGAAAAACACATAAAAACAATACATCTTAAAGTATGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACCACAAGCCAAGTTTAGAAAAACACATAAAAACAATACATCTTAAAGTAAGCGATTATAAATGCGAAGAGTGTGAATACAAGACAGGCTACAAGTCAAGTTTAGAAAACCACATAAAAACAATACATCTTAAAGTATGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACCACAAGCCAAGTTTAGAAAAACACATAAAAACAATACATCATAAAGTAAGCGATTATAAATGCGAAGAGTGTGAATACAAGACAGGCTACAAGTCAAGTGTAGAAAGCCACATAAAAACAAGGCATCTTAAAGTAAGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACCACAAGCCGAATTTAGAAAAACACATAAAAACAATACATCTTAAAGTATGCGATTATAAATGCGAAGAGTGTGAATACATGACAAACTACAAGTCAACATTAAAACGACACATAAAGACAGTACATTTGAAAATAACCGATTATAAATGTGCAGAGTGTGAATACAAGACAAACCACAAGCTAAATTTTGAAAAACATATAAAAACAATACATCCTAAAGTTAGCCATTATAAATGCGCAGTGTGA
- Protein Sequence
- MYNADFRQHTYEHYGVKLYKCSICDRRYKAKESLKAHVETNHADNEGTCDHFKATIKNIKQRSRPLQHVGGKLCQCSKCKPPTGSKRYLKPLIKIKHLNRGKYKCANCEFKTYYRTYLQMHMKIKHLMESNYKCMECEFETGYKSSLQIHIKTIHLKQNYYKCAECKYKTSCKPNLKRHIKTIHLKVNDYKCEECEYMTNYKSSLEKHIKTIHLKVCDYKCEECEYMTNYKSSLEKHIKTIHIKVCDYKCKECEYMTNHKPNLEKHIKTIHLKVRDYKCVECEYKTGYKSNLESHIKTRHLKVSDYKCVECEYKTNHKPNLEKHIKTMHLKVSDYKCEECEYKTGYKSSLESHIKTRHLKVSDYKCVECEYMTNYKSSLEKHVKTIHLKVCDYKCEECEYKTGYKSNLEKHIKRIHLKVSDYKCEECEYKTGYKSSLEGHIKSRHLKVSDYKCEECEYKTNHKPSLEKHIKTIHLKVSHYKCEECEYKTGYKSSLEKHIKTRHLKVCDYKCEECEYKTNHKPSLEKHIKTIHLKVSDYKCEECEYKTGYKSSLEGHIKTRHLKVSDYKCEECEYKTNHKPSLEKHIKTIHLKVCDYKCEECEYKTNHKPSLEKHIKTIHLKVSDYKCEECEYKTGYKSSLENHIKTIHLKVCDYKCEECEYKTNHKPSLEKHIKTIHHKVSDYKCEECEYKTGYKSSVESHIKTRHLKVSDYKCEECEYKTNHKPNLEKHIKTIHLKVCDYKCEECEYMTNYKSTLKRHIKTVHLKITDYKCAECEYKTNHKLNFEKHIKTIHPKVSHYKCAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00989750;
- 90% Identity
- -
- 80% Identity
- -