Mmel132508.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- Prdm9
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010001380.1:111949-120349[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.00018 0.02 18.7 1.3 1 23 396 419 396 419 0.98 2 31 0.28 33 8.6 2.9 1 23 480 503 480 503 0.97 3 31 0.018 2.1 12.4 0.9 1 23 509 532 509 532 0.98 4 31 0.00096 0.11 16.4 1.9 1 23 538 561 538 561 0.98 5 31 0.0023 0.26 15.2 0.4 1 23 567 590 567 590 0.98 6 31 0.0016 0.19 15.7 2.9 1 23 596 619 596 619 0.98 7 31 0.0028 0.33 14.9 1.9 1 23 625 648 625 648 0.98 8 31 0.0018 0.21 15.6 0.6 1 23 654 677 654 677 0.98 9 31 0.0016 0.19 15.7 2.9 1 23 683 706 683 706 0.98 10 31 0.00042 0.049 17.5 0.5 1 23 712 735 712 735 0.98 11 31 0.00011 0.013 19.3 1.0 1 23 741 764 741 764 0.98 12 31 0.0059 0.69 13.9 2.4 1 23 770 793 770 793 0.98 13 31 0.00096 0.11 16.4 1.9 1 23 799 822 799 822 0.98 14 31 0.00078 0.091 16.7 1.6 1 23 828 851 828 851 0.98 15 31 0.0028 0.33 14.9 1.9 1 23 857 880 857 880 0.98 16 31 0.00082 0.095 16.6 2.0 1 23 886 909 886 909 0.98 17 31 0.00082 0.095 16.6 2.0 1 23 915 938 915 938 0.98 18 31 0.0028 0.33 14.9 1.9 1 23 944 967 944 967 0.98 19 31 0.0071 0.83 13.7 2.7 2 23 974 996 973 996 0.97 20 31 0.00096 0.11 16.4 1.9 1 23 1002 1025 1002 1025 0.98 21 31 2.4e-05 0.0028 21.4 3.0 1 23 1031 1054 1031 1054 0.98 22 31 0.00042 0.049 17.5 0.5 1 23 1060 1083 1060 1083 0.98 23 31 0.00014 0.017 19.0 0.6 1 23 1089 1112 1089 1112 0.98 24 31 0.0059 0.69 13.9 2.4 1 23 1118 1141 1118 1141 0.98 25 31 0.0028 0.33 14.9 1.9 1 23 1181 1204 1181 1204 0.98 26 31 0.00096 0.11 16.4 2.9 1 23 1210 1233 1210 1233 0.98 27 31 0.0013 0.15 16.0 0.2 1 23 1239 1262 1239 1262 0.98 28 31 0.00028 0.033 18.1 2.0 1 23 1268 1291 1268 1291 0.98 29 31 0.027 3.2 11.8 1.8 1 23 1297 1320 1297 1320 0.98 30 31 0.012 1.4 12.9 0.4 1 23 1326 1350 1326 1350 0.98 31 31 0.0082 0.96 13.5 1.6 1 23 1356 1379 1356 1379 0.98
Sequence Information
- Coding Sequence
- ATGTCTCAAGAAATTGATAAATTAGGTGTGAATAACACAATATCTTTGGAAACTTCAAGTGATGTAAAAGAAGAATTCCAGGATGAATATTATGCAGATAATAAAGTATGTGTCTCTGAAACTACTATCACGGATACTAATAACATAAATAATAGTGAATTAAATGGGTATATTAAAAGTGACAAAATAAGGAAATATGAAATGCTCTCTCCAGATCGTATGGAAATAGACTTACCATCATCTGAAGTAAATCATACAGTAAATAACAATGTTAAAATAGAAGATGGAATTTGCTTTTCTGATGTACAAATTAAATTTGATAATGAACTGCTGTTTTGTAGCCATTGCCAAGAAGTGTATCAAGATTATTGTACCAAATGTAGAGTGCTTATATGTGTTTTGAATCAAAGGCCTTGTAATACATATGACAGAATAAGAGAATTACCAAAATATATGTTAGAAACTAGAGAGTCAATTGGATATTTGGGAATATTTTCTTTAAAAGTTATACCAGAAGGTGTAAGATTTGGGCCTTTCACTGGACTTAATTCAACAGGACTGGCTTTGAGAATAAAAGGGGGAAGGTTTGTGGTTAGCAATGATAAATCTGAGCTTCTGAATTGGATGCAGTTTATCAACCCTGCCAGAAATATTCATGAACAAAATTTATTCCCATTTCAATATGAAGACAAGTTATATTATTGTAGCACACGTAGAATTCAGGAGGGTGAAGAGCTATTAGTGTATTTTGGTGAAGAATACAAAGATAATCTACTAAAAAATGTGGAAATGAATTTTGTGCCCATCACAAAAAAGGATGTTGAAAACACATTTGCTTGCATTTTGTGTTGCTTGGGATTAAGGTCAAAGGAATATTTAGCTGAACACAAAGCTGCATGCCATAGTGAAGTGAATGAAATGTTTACTGTTGAAGGTAGGATGAATCATTTTAATTTTTCAAATAATAGTTTTGATTTGAAATTGAATGCGGATTCGTTTGTTTTCAGATACAGCGTACCTCCTACACCGGAGTTTTACGAGCTAGAAGTAGAAAGGCGTTCATCTCTAAGAAGCAATGCTAAAAAACGCAAACGTAGAATATACAAATGTACACGACGCAAGTTTACAACAATGTACAACGCCGACTTCAGGCAACACACTTATGAGCATTACGGGGTGAAATTGTACAAATGTAGTATTTGTGACAGAAGATACAAGGCGAAGGAATCTCTCAAAGCGCACTTGCAAAAAAATCATGCTGACAATGAAGGAACATGTGACTACTTCAAAGCTACTATTAAAAATATAAAACAGAGATCTCGACCCTTACAGCATGTTGGTGGAAAACTTTGTCAATGCTCAAAATGCAAGCCTCCAACAGGGTCCAAACGTTACCTAAAGCCACTTATAAAAATAAAACATCTAAACACAGGCAAATATAAGTGCGCAAATTGCGAGTTTAAGACATATTACAGGACTTATTTGCAAATGCATATGAAGATAAAACATCTCATGGAATCTAACTATAAATGCATGGAGTGTGAATTCGAGACAGGCTACAAGTCAAGTTTACAAATACACATAAAAACAAGACATCTTAAAGTAAGCGATTATAAATGCGTAGAGTGTGAATACAAGACAAACCACAAGCCAAATTTAGAAAAACACATAAAAACAATACATCTTAAAGTATGGGATTATAAATGCGTAGAGTGTGAATACAAGACAAACGTCAAACCAAATTTAGAAAAACACATAAAAACAATACATCTTAAAGTATGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACCACAAGCCAAGTTTAGAAAAACACATAAAAACAAGACATCTTAAAGTAAGCGATTATAAATGCGTAGAGTGTGAATACAAGACAAACCACAAGCCAAGCTTAGAAAAACACATAAAAACAATACATCTTAAAGTATGGGATTATAAATGCGTAGAGTGTGAATACAAGACAAACGACAAGCCATATTTAGAAAAACACATAAAAACAATACATCTTAAAGTAAGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACCACAAGCCAAGTTTAGAAAAACACATAAAAACAAGACATCTTAAAGTATGGGATTATAAATGCGTAGAGTGTGAATACAAGACAAACGACAAGCCAAATTTAGAAAAGCACATAAAAACAATACATCTTAAAGTAAGCGATTATAAATGCGAAGAGTGTGAATACATGACAAACTACAAGTCATCATTAGAAAAACACATAAAAACAATACATCTTAAAGTATGCGATTATAAATGCGCTGAGTGTGAATACAAGACAGGCCACAAGTCAACTTTAGAAAGCCACATAAAAACAAGACATCTTAAAGTAAGCGATTATAAATGCGTAGAGTGTGAATACAAGACAAACCACAAGCCAAATTTAGAAAAACACATAAAAACAATACATCTTAAAGTAAGCGATTATACATGCGAAGAGTGTGAATACAAGACAAACCACAAGCCAAGTTTAGAAAGACACATAAAAACAATACATCTTAAAGTAAGGGATTATAAATGCGTAGAGTGTGAATACAAGACAAACCACAAGCCAAGTTTAGAAAAACACATAAAAACAATACATCTTAAAGTAAGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACCACAAGCCAAGTTTAGAAAAACACATAAAAACAATACATCTTAAAGTAAGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACCACAAGCCAAGTTTAGAAAAACACATAAAAACAATACATCTTAAAGTAAGGGATTATAAATGCGTAGAGTGTGAATACAAGACAAACCACAAGCCAAGTTTAGAAAAACACATAAAAACAATACATCTTAAAGTAAGCGATAATAAATGCGAAGAGTGTAAATACAAGACAAACCATAAGCCAAGTTTAGAAAAACACATAAAAACAATACATCTTAAAGTAAGGGATTATAAATGCGTAGAGTGTGAATACAAGACAAACCACAAGCCAAATTTAGAAAAACACATAAAAACAATACATCTTAAAGTAAGCGATTATAAATGCCAAGAGTGTGGATACAAGACAAACCACAAGTCAAGTTTAGAAAGACACATAAAAACAATACATCTTAAAGTATGGGATTATAAATGCGTAGAGTGTGAATACAAGACAAACGACAAGCCAAATTTAGAAAAGCACATAAAAACAATACATCTTAAAGTAAGTGATTATAAATGCGAAGAGTGTGAATACATGACAAACTACAAGTCAGCATTAGAAAAACACATAAAAACAATACATCTTAAAGTATGCGATTATAAATGCGCTGAGTGTGAATACAAGACAGGCCACAAGTCAACTTTAGAAAGCCACATAAAAACAAGACATCTTAAAGTAAGCGATTATAAATGCGTAGAGTCGATTATAAATGCGAAGAGTTACAAGACTAACCACAAGCCAAGTTTAGAAAAACACATAAAAACAATACATCTTAAAGTAAGGGATTATAAATGCGTAGAGTGTGAATACAAGACAAACCACAAGCCAAGTTTAGAAAAACACATAAAAACAATACATCTTAAAGTAAGCGATTATAAATGCGAAGAGTGTAAATACAAGACAAACCATAAGCCAAGTTTAGAAAAACACATAAAAACAATACATCTTAAAGTAAGGGATTATAAATGCGTAGAGTGTGAATACAGGACAAACGACAAGCCAAATTTAGAAGAACACATAAAAACAATACATCTTAAAGTAAGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAATCACAAGCCAAATTTAGAAAAACACATAAAAACAATACATCTTAAAGGATGGGATTATAAATGTGCAGAGTGTGAATTCAAGACATACCACAAGTTAAATTTAGAAAAACACATAGAGACAATACATCCTAAAGTTGGAGATTATAAATGCGTCGTAGAGTGTGAATACAAGGCAAACAACAAGTCAACATTAGCAAGACACTTAAAGACAGTACATCTGGAAGTAACCGATTATAAATGTGCAGATTGTGAATACAAGACAAACTACAAACTAAATTTTGAAAAACATATAAAAACAATACATCCTAAAGTTAGCTATTATAAATGCGTAGTGTGA
- Protein Sequence
- MSQEIDKLGVNNTISLETSSDVKEEFQDEYYADNKVCVSETTITDTNNINNSELNGYIKSDKIRKYEMLSPDRMEIDLPSSEVNHTVNNNVKIEDGICFSDVQIKFDNELLFCSHCQEVYQDYCTKCRVLICVLNQRPCNTYDRIRELPKYMLETRESIGYLGIFSLKVIPEGVRFGPFTGLNSTGLALRIKGGRFVVSNDKSELLNWMQFINPARNIHEQNLFPFQYEDKLYYCSTRRIQEGEELLVYFGEEYKDNLLKNVEMNFVPITKKDVENTFACILCCLGLRSKEYLAEHKAACHSEVNEMFTVEGRMNHFNFSNNSFDLKLNADSFVFRYSVPPTPEFYELEVERRSSLRSNAKKRKRRIYKCTRRKFTTMYNADFRQHTYEHYGVKLYKCSICDRRYKAKESLKAHLQKNHADNEGTCDYFKATIKNIKQRSRPLQHVGGKLCQCSKCKPPTGSKRYLKPLIKIKHLNTGKYKCANCEFKTYYRTYLQMHMKIKHLMESNYKCMECEFETGYKSSLQIHIKTRHLKVSDYKCVECEYKTNHKPNLEKHIKTIHLKVWDYKCVECEYKTNVKPNLEKHIKTIHLKVCDYKCEECEYKTNHKPSLEKHIKTRHLKVSDYKCVECEYKTNHKPSLEKHIKTIHLKVWDYKCVECEYKTNDKPYLEKHIKTIHLKVSDYKCEECEYKTNHKPSLEKHIKTRHLKVWDYKCVECEYKTNDKPNLEKHIKTIHLKVSDYKCEECEYMTNYKSSLEKHIKTIHLKVCDYKCAECEYKTGHKSTLESHIKTRHLKVSDYKCVECEYKTNHKPNLEKHIKTIHLKVSDYTCEECEYKTNHKPSLERHIKTIHLKVRDYKCVECEYKTNHKPSLEKHIKTIHLKVSDYKCEECEYKTNHKPSLEKHIKTIHLKVSDYKCEECEYKTNHKPSLEKHIKTIHLKVRDYKCVECEYKTNHKPSLEKHIKTIHLKVSDNKCEECKYKTNHKPSLEKHIKTIHLKVRDYKCVECEYKTNHKPNLEKHIKTIHLKVSDYKCQECGYKTNHKSSLERHIKTIHLKVWDYKCVECEYKTNDKPNLEKHIKTIHLKVSDYKCEECEYMTNYKSALEKHIKTIHLKVCDYKCAECEYKTGHKSTLESHIKTRHLKVSDYKCVESIINAKSYKTNHKPSLEKHIKTIHLKVRDYKCVECEYKTNHKPSLEKHIKTIHLKVSDYKCEECKYKTNHKPSLEKHIKTIHLKVRDYKCVECEYRTNDKPNLEEHIKTIHLKVSDYKCEECEYKTNHKPNLEKHIKTIHLKGWDYKCAECEFKTYHKLNLEKHIETIHPKVGDYKCVVECEYKANNKSTLARHLKTVHLEVTDYKCADCEYKTNYKLNFEKHIKTIHPKVSYYKCVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -