Mmel015713.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000127.1:460857-471063[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 39 0.18 21 9.2 0.3 5 23 2 21 1 21 0.93 2 39 0.014 1.6 12.8 1.6 1 23 27 50 27 50 0.96 3 39 0.0024 0.28 15.1 1.6 1 23 56 79 56 79 0.97 4 39 0.0011 0.13 16.2 0.8 1 23 85 108 85 108 0.96 5 39 0.017 2 12.4 2.1 1 23 114 137 114 137 0.96 6 39 0.0012 0.14 16.1 1.7 1 23 143 166 143 166 0.98 7 39 0.0011 0.13 16.2 0.8 1 23 172 195 172 195 0.96 8 39 0.022 2.5 12.1 0.5 1 23 201 224 201 224 0.96 9 39 3.8 4.4e+02 5.1 0.1 1 23 236 259 236 259 0.95 10 39 0.47 55 7.9 1.1 2 23 266 288 265 288 0.95 11 39 0.0012 0.14 16.1 1.7 1 23 294 317 294 317 0.98 12 39 0.024 2.8 12.0 3.2 1 23 323 346 323 346 0.96 13 39 0.02 2.3 12.3 0.6 1 23 352 375 352 375 0.96 14 39 0.0012 0.14 16.1 1.7 1 23 381 404 381 404 0.98 15 39 0.0011 0.13 16.2 0.8 1 23 410 433 410 433 0.96 16 39 0.0011 0.13 16.2 0.8 1 23 439 462 439 462 0.96 17 39 0.0012 0.14 16.1 1.7 1 23 468 491 468 491 0.98 18 39 0.0011 0.13 16.2 0.8 1 23 497 520 497 520 0.96 19 39 0.022 2.5 12.1 0.5 1 23 526 549 526 549 0.96 20 39 3.8 4.4e+02 5.1 0.1 1 23 561 584 561 584 0.95 21 39 0.47 55 7.9 1.1 2 23 591 613 590 613 0.95 22 39 0.0012 0.14 16.1 1.7 1 23 619 642 619 642 0.98 23 39 0.024 2.8 12.0 3.2 1 23 648 671 648 671 0.96 24 39 0.02 2.3 12.3 0.6 1 23 677 700 677 700 0.96 25 39 0.0012 0.14 16.1 1.7 1 23 706 729 706 729 0.98 26 39 0.024 2.8 12.0 3.2 1 23 735 758 735 758 0.96 27 39 0.02 2.3 12.3 0.6 1 23 764 787 764 787 0.96 28 39 0.0012 0.14 16.1 1.7 1 23 793 816 793 816 0.98 29 39 0.024 2.8 12.0 3.2 1 23 822 845 822 845 0.96 30 39 0.017 2 12.5 0.5 1 21 851 871 851 872 0.96 31 39 0.00091 0.11 16.5 0.5 1 23 880 903 880 903 0.96 32 39 0.0043 0.5 14.4 2.1 1 23 909 932 909 932 0.96 33 39 0.00033 0.038 17.9 1.2 1 23 938 961 938 961 0.98 34 39 0.032 3.7 11.6 1.2 1 23 967 990 967 990 0.96 35 39 0.0062 0.72 13.9 3.2 1 23 1020 1043 1020 1043 0.96 36 39 5.2 6e+02 4.7 0.1 5 23 1053 1072 1052 1072 0.92 37 39 0.00091 0.11 16.5 0.5 1 23 1078 1101 1078 1101 0.96 38 39 0.0043 0.5 14.4 2.1 1 23 1107 1130 1107 1130 0.96 39 39 1.3 1.5e+02 6.6 0.3 6 23 1167 1184 1165 1184 0.82
Sequence Information
- Coding Sequence
- atggagtgtgaatacaagacaagtcgtaagtatgacttaaaaaggcacacaaacgaagtacatctgaaacaaaaagattataaatgcatggagtgtgaattcaagacaaatggcaaatcacatttagaaaaacacataaaagcgatacatctgaaacaaaaggattataaatgcaaggagtgtgaattcaagacaagtcgtaagtatgtcttaaaaaggcacataagcgtagtacatctgaaacaaaaagattataaatgcaaggagtgtgaattcaagacaagtcgcaagtcaggtttagaagaacacataaaaggtatgcatctgaaacaaaaggattataaatgcatggagtgcgaattcaagacaagtcgcaagtcatgtttagaagaacacataaaagcgatacatctgaaacaaaaggattataaatgcaaggagtgtgaattcaagacaagtcgtaagtatgtcttaaaaaggcacataaacgtagtacatctgatacaaaaagattataaatgcaaggagtgtgaattcaagacaagtcgcaagtcaggtttagaagaacacataaaaggtatgcatctgaaacaaaaggattataaatgcatggagtgcgaattcaagacaaattacaaatcaaatttagaaggacacataaaagcgatacatctgaaacaaaaggattataaatgcaaggagtattataaatgcatggagtgcgaatacgaaacaagtggcaaggcacgtttaggagaacacataaaagcgatacatctgaaacaaaaggataataaatgcatggagtgtgaattcaagacaaatttcaaatcaaaattagaaacacacataaaagcagtacatctggaacaaaaggattataaatgcaaggagtgtgaattcaagacaagtcgtaagtatgtcttaaaaaggcacataaacgtagtacatctgaaacaaaaagattataaatgcaaggagtgtgaattcaagacaagttacaagtcatgtttagaagaacacataaaaggtatgcatctgaaacaaaaggattataaatgcatggagtgcgaattcaagacaaattacaaatcaagtttagaagaacacataaaagcgatacatctgaaacaaaaggattataaatgcaaggagtgtgaattcaagacaagtcgtaagtatgtcttaaaaaggcacataaacgtagtacatctgaaacaaaaagattataaatgcaaggagtgtgaattcaagacaagtcgcaagtcaggtttagaagaacacataaaaggtatgcatctgaaacaaaaagattataaatgcaaggagtgtgaattcaagacaagtcgcaagtcaggtttagaagaacacataaaaggtatgcatctgaaacaaaaggattataaatgcaaggagtgtgaattcaagacaagtcgtaagtatgtcttaaaaaggcacataaacgtagtacatctgatacaaaaagattataaatgcaaggagtgtgaattcaagacaagtcgcaagtcaggtttagaagaacacataaaaggtatgcatctgaaacaaaaggattataaatgcatggagtgcgaattcaagacaaattacaaatcaaatttagaaggacacataaaagcgatacatctgaaacaaaaggattataaatgcaaggagtattataaatgcatggagtgcgaatacgaaacaagtggcaaggcacgtttaggagaacacataaaagcgatacatctgaaacaaaaggataataaatgcatggagtgtgaattcaagacaaatttcaaatcaaaattagaaacacacataaaagcagtacatctggaacaaaaggattataaatgcaaggagtgtgaattcaagacaagtcgtaagtatgtcttaaaaaggcacataaacgtagtacatctgaaacaaaaagattataaatgcaaggagtgtgaattcaagacaagttacaagtcatgtttagaagaacacataaaaggtatgcatctgaaacaaaaggattataaatgcatggagtgcgaattcaagacaaattacaaatcaagtttagaagaacacataaaagcgatacatctgaaacaaaaggattataaatgcaaggagtgtgaattcaagacaagtcgtaagtatgtcttaaaaaggcacataaacgtagtacatctgaaacaaaaagattataaatgcaaggagtgtgaattcaagacaagttacaagtcatgtttagaagaacacataaaaggtatgcatctgaaacaaaaggattataaatgcatggagtgcgaattcaagacaaattacaaatcaagtttagaagaacacataaaagcgatacatctgaaacaaaaggattataaatgcaaggagtgtgaattcaagacaagtcgtaagtatgtcttaaaaaggcacataaacgtagtacatctgaaacaaaaagattataaatgcaaggagtgtgaattcaagacaagttacaagtcatgtttagaagaacacataaaaggtatgcatctgaaacaaaaggattataaatgcatggagtgcgaattcaagacaaattacaaatcaaatttagaaacacacataaaagcagtatatctgaaacaaaaggattataaatgcaaggagtgtgaattcaagacaagtcgcaagtcaggtttagaagaacacataaaagcagtacatctggaacaaaaggattataaatgcatggagtgtgaattcaagacaagtcgtaagtatgacttaaaaaggcacacaaatgaagtacatctgaaacaaaaacattataaatgcatggagtgtgAATTCAAGACAAGTCGTAAGTCTCTCTTAAAAAGGCACATAAACGTAGTACATCTGAAACAAAAAGATTATAAATGCATGGAGTGCGAATTCAAGACAAATTACAAATCAAAATTAGAAACACACATAAAAGCAGTACATCTGGAACAAaaggattataaatgcaaggagtGCAGCAAGTCAAGTTTAGGAAAACACATAAAATCAATACATCTGAAACAAGAGGATTATAAATGCAAGGAGTGTGAATTCAAGACAAGTCGCAAGTCATGTTTAGAAGAACACATAAAAGGTATGCATCTGAAACAAAAGGATTATAAATACATGGAGTGCGAATTCAAGACAAATTACAAATCAAGTTTAGAAGAACACATAAAAGCGATACATCTGAAACAAAAGGATTATAAATGCAAGGAGTGTGAATTCAAGACAAGTCGCAAGTCAGGTTTAGAAGAACACATAAAAGCAGTACATCTGGAACAAAAGGATTATAAATGCATGGAGTGTGAATTCAAGACAAGTCGTAAGTATGACTTAAAAAGGCACACAAACGAAGTACATCTGAAACAAAAAGATTATAAATGCATGGAGTACGAATTCAAGACAAATTACAAATCAAATTTAGAAGGACACATAAAAGCGATACATCTGaaacaaaaggattataaatgcaaggagtCAAGTCGAAAGTCAGACTTAGAAAGACACATAAAAGCGATGCATGTGAAACAAGAGGATTATAAATGCCTGGAGTACGGATGCGAGGCAAATTCGAAGTCAGATTTAGAAGGACACATAAAAGCGATACATCTGAAACAAGAGGATTATAAATGCATGGAGTACGAAGACGAGACAAGTCGTATGTAA
- Protein Sequence
- MECEYKTSRKYDLKRHTNEVHLKQKDYKCMECEFKTNGKSHLEKHIKAIHLKQKDYKCKECEFKTSRKYVLKRHISVVHLKQKDYKCKECEFKTSRKSGLEEHIKGMHLKQKDYKCMECEFKTSRKSCLEEHIKAIHLKQKDYKCKECEFKTSRKYVLKRHINVVHLIQKDYKCKECEFKTSRKSGLEEHIKGMHLKQKDYKCMECEFKTNYKSNLEGHIKAIHLKQKDYKCKEYYKCMECEYETSGKARLGEHIKAIHLKQKDNKCMECEFKTNFKSKLETHIKAVHLEQKDYKCKECEFKTSRKYVLKRHINVVHLKQKDYKCKECEFKTSYKSCLEEHIKGMHLKQKDYKCMECEFKTNYKSSLEEHIKAIHLKQKDYKCKECEFKTSRKYVLKRHINVVHLKQKDYKCKECEFKTSRKSGLEEHIKGMHLKQKDYKCKECEFKTSRKSGLEEHIKGMHLKQKDYKCKECEFKTSRKYVLKRHINVVHLIQKDYKCKECEFKTSRKSGLEEHIKGMHLKQKDYKCMECEFKTNYKSNLEGHIKAIHLKQKDYKCKEYYKCMECEYETSGKARLGEHIKAIHLKQKDNKCMECEFKTNFKSKLETHIKAVHLEQKDYKCKECEFKTSRKYVLKRHINVVHLKQKDYKCKECEFKTSYKSCLEEHIKGMHLKQKDYKCMECEFKTNYKSSLEEHIKAIHLKQKDYKCKECEFKTSRKYVLKRHINVVHLKQKDYKCKECEFKTSYKSCLEEHIKGMHLKQKDYKCMECEFKTNYKSSLEEHIKAIHLKQKDYKCKECEFKTSRKYVLKRHINVVHLKQKDYKCKECEFKTSYKSCLEEHIKGMHLKQKDYKCMECEFKTNYKSNLETHIKAVYLKQKDYKCKECEFKTSRKSGLEEHIKAVHLEQKDYKCMECEFKTSRKYDLKRHTNEVHLKQKHYKCMECEFKTSRKSLLKRHINVVHLKQKDYKCMECEFKTNYKSKLETHIKAVHLEQKDYKCKECSKSSLGKHIKSIHLKQEDYKCKECEFKTSRKSCLEEHIKGMHLKQKDYKYMECEFKTNYKSSLEEHIKAIHLKQKDYKCKECEFKTSRKSGLEEHIKAVHLEQKDYKCMECEFKTSRKYDLKRHTNEVHLKQKDYKCMEYEFKTNYKSNLEGHIKAIHLKQKDYKCKESSRKSDLERHIKAMHVKQEDYKCLEYGCEANSKSDLEGHIKAIHLKQEDYKCMEYEDETSRM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -