Mmel076990.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000645.1:582053-585580[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 39 0.00038 0.045 17.7 3.3 1 23 5 28 5 28 0.96 2 39 0.33 39 8.4 4.5 2 21 67 86 66 87 0.93 3 39 0.38 44 8.2 3.6 1 23 95 118 95 118 0.96 4 39 0.0024 0.28 15.1 1.7 1 23 124 147 124 147 0.96 5 39 0.0003 0.035 18.0 2.3 1 23 153 176 153 176 0.96 6 39 0.00027 0.032 18.1 1.8 1 23 182 205 182 205 0.98 7 39 0.00052 0.061 17.2 0.8 1 23 211 234 211 234 0.96 8 39 0.0003 0.035 18.0 1.0 1 23 240 263 240 263 0.96 9 39 0.00022 0.026 18.4 2.0 1 23 269 292 269 292 0.98 10 39 0.00073 0.085 16.8 2.0 1 23 298 321 298 321 0.96 11 39 0.00026 0.03 18.2 0.7 1 23 327 350 327 350 0.96 12 39 0.00022 0.026 18.4 2.0 1 23 356 379 356 379 0.98 13 39 0.00073 0.085 16.8 2.0 1 23 385 408 385 408 0.96 14 39 0.00099 0.12 16.4 2.4 1 23 414 437 414 437 0.96 15 39 0.00026 0.03 18.2 0.7 1 23 443 466 443 466 0.96 16 39 0.00022 0.026 18.4 2.0 1 23 472 495 472 495 0.98 17 39 0.00073 0.085 16.8 2.0 1 23 501 524 501 524 0.96 18 39 0.035 4.1 11.5 1.2 1 23 530 553 530 553 0.96 19 39 0.017 2 12.5 0.4 1 23 559 582 559 582 0.96 20 39 0.00034 0.04 17.8 0.9 1 23 588 611 588 611 0.96 21 39 0.00073 0.085 16.8 2.0 1 23 617 640 617 640 0.96 22 39 0.0025 0.29 15.1 2.2 1 23 646 669 646 669 0.96 23 39 0.00073 0.085 16.8 2.0 1 23 675 698 675 698 0.96 24 39 0.053 6.2 10.9 0.4 1 23 704 727 704 727 0.95 25 39 0.00034 0.04 17.8 0.9 1 23 733 756 733 756 0.96 26 39 0.00073 0.085 16.8 2.0 1 23 762 785 762 785 0.96 27 39 0.0025 0.29 15.1 2.2 1 23 791 814 791 814 0.96 28 39 0.017 2 12.5 0.4 1 23 820 843 820 843 0.96 29 39 0.00093 0.11 16.4 1.1 1 23 849 872 849 872 0.96 30 39 0.00034 0.04 17.8 0.9 1 23 878 901 878 901 0.96 31 39 0.00073 0.085 16.8 2.0 1 23 907 930 907 930 0.96 32 39 0.0025 0.29 15.1 2.2 1 23 936 959 936 959 0.96 33 39 0.00021 0.025 18.5 1.3 1 23 965 988 965 988 0.98 34 39 0.0017 0.19 15.7 0.7 1 23 994 1017 994 1017 0.96 35 39 0.0011 0.13 16.2 0.9 1 23 1023 1046 1023 1046 0.96 36 39 0.00099 0.11 16.4 1.5 1 23 1052 1075 1052 1075 0.98 37 39 0.0025 0.29 15.1 0.7 1 23 1081 1104 1081 1104 0.96 38 39 0.00085 0.099 16.6 2.3 1 23 1110 1133 1110 1133 0.98 39 39 0.0098 1.1 13.2 0.5 1 23 1139 1162 1139 1162 0.96
Sequence Information
- Coding Sequence
- ATGGTGAAAATGTACAAGTGTGGAATCTGTCACAGAAGATACAAGACGAAGACATCTCTCAAGGCGCACGTGGAAAAAAATCATGTTGACAATGAAGGAGGAGATGTCAACAAACATTCTAGATGTGACTATTTCATAACTAATACTAGGAATATGAAAAAGAGATCTCCACATTTACATGTTGGTGGAAGACGATGTCAATGCGCGAAATGCAAATTTCAAGTAAAGAGAAAATATCACTTAAAGTCACATATAAAAATAAGACAACTGAACAGAGGAAAATATAAGTGCGCACATTGCGAGTTTAAGACCGATTATAGGTCTTATTTAAAAATGCATACGAAATTGGCACATCTCATCCAAATTGATTATAAATGCAGGGACTGTGAATTCAAGACAAGCTACAAGCGTAATTTAGAGAAACACATCAAGGCAGTGCATCTTAAAATAAGCGATTATAAATGCGAAGATTGTGAATACAAGACAAACAACAAGTATCATTTAGAGAAACACATCAAGGCAGTGCATCTTAAAATAAGCGATTATAAATGCGAAGATTGTGAATACAAGACAAACTACAAGTATAATTTAGAGATTCACATAAAGACGAAGCATCTTAAAATAAGCGATTATAAGTGCGCAGGTTGTGAATACAAGACAAACAACAAGTATAATTTAGAGAAACACATCAAGGCAATGCATCTTAAAATAAGCGATTATAAATGCGCAGATTGTGAATACAAGACAAACAACAAGTATAATTTAGAGAAACACATCAAGGCAATGCATCTTAAAATAAGCGACTATAAATGCGCAGATTGTAAATACAAGACAAACAACAAGTATAATTTAGAGATTCACATAAAGACGAAGCATCTTAAAATAAGCGATTATAAGTGCGCAGATTGTGAATACAAGACAAACAACAAGTATCATTTAGAGAAACACATCAAGGCAGTGCATCTTAAAATAAGCGATTATAAATGCGCAGATTGTGAATACAAGACAAACAACAAGTATAATTTAGAGAAACACATCAAGGCAGTGCATCTTAAAATAAGCGACTATAAATGCGCAGATTGTAAATACAAGACAAACAACAAGTATAATTTAGAGATTCACATAAAGACGAAGCATCTTAAAATAAGCGATTATAAGTGCGCAGATTGTGAATACAAGACAAACAACAAGTATCATTTAGAGAAACACATCAAGGCAGTGCATCTTAAAATAATCGATTATAAATGCGCAGATTGTGAATACAAGACAAACAACAAGTATCATTTAGAGAAACACATCAAGGCAATGCATCTTAAAATAAGCGATTATAAATGCGCAGATTGTGAATACAAGACAAACAACAAGTATAATTTAGAGAAACACATCAAGGCAGTGCATCTTAAAATAAGCGACTATAAATGCGCAGATTGTAAATACAAGACAAACAACAAGTATAATTTAGAGATTCACATAAAGACGAAGCATCTTAAAATAAGCGATTATAAGTGCGCAGATTGTGAATACAAGACAAACAACAAGTATCATTTAGAGAAACACATCAAGGCAGTGCATCTTAAAATAAGCGATTATAAATGCGCAGATTGCGAATACAAGCCAAACAACAAGTATCATTTAGAGAAACACATCAAGGCAGTGCATCTTAAAATAAGCGATTATAAGTGCGCAGATTGTGAATACAAGCCAAACAACAAGTATAATTTAGAGAAACACATCAAGGCAGTGCATCTTAAAATAAGCGATTATAAATGCGAAGATTGTGAATACAAGACAAACAACAAGTATAATTTAGAGATTCACATAAAGGCGAAGCATCTTAAAATAAGCGATTATAAGTGCGCAGATTGTGAATACAAGACAAACAACAAGTATCATTTAGAGAAACACATCAAGGCAGTGCATCTTAAAATAATCGATTATAAATGCGCAGATTGTGAATACAAGACAAACTACAAGTATCATTTAGAGAAACACATCAAGGCAGTGCATCTTAAAATAAGCGATTATAAATGCGCAGATTGTGAATACAAGACAAACAACAAGTATCATTTAGAGAAACACATCAAGGCAGTGCATCTTAAAATAAGCGATTATAAGTGCGCAGATTGTGAATACAAGCCAAACAACAAGTATAATTTAGAGAAACACGTCAAGGCAGTGCATCTTAAAATAAGCGATTATAAATGCGAAGATTGTGAATACAAGACAAACAACAAGTATAATTTAGAGATTCACATAAAGGCGAAGCATCTTAAAATAAGCGATTATAAGTGCGCAGATTGTGAATACAAGACAAACAACAAGTATCATTTAGAGAAACACATCAAGGCAGTGCATCTTAAAATAATCGATTATAAATGCGCAGATTGTGAATACAAGACAAACTACAAGTATCATTTAGAGAAACACATCAAGGCAGTGCATCTTAAAATAAGCGATTATAAATGCGCAGATTGTGAATACAAGCCAAACAACAAGTATAATTTAGAGAAACACATCAAGGCAGTGCATCTTAAAATAAGCGATTATAAATGCGAAGATTGTGAATACAAGACAAACTACAAGTATAATTTAGAGAAACACGTCAAGGCAGTGCATCTTAAAATAAGCGATTATAAATGCGAAGATTGTGAATACAAGACAAACAACAAGTATAATTTAGAGATTCACATAAAGGCGAAGCATCTTAAAATAAGCGATTATAAGTGCGCAGATTGTGAATACAAGACAAACAACAAGTATCATTTAGAGAAACACATCAAGGCAGTGCATCTTAAAATAATCGATTATAAATGCGCAGATTGTGAATACAAGACAAACTACAAGTATCATTTAGAGAAACACATCAAGGCAGTGCATCTTAAAATAAGCGACTATAAATGCGCAGATTGTGAATACAAGACAAACAACAAGTATAATTTAGAGATTCACATAAAGACGAAGCATCTTAAAATAAGCGATTATACGTGCGCAGATTGTGAATACAAGACAAACAACAAGTATTATTTAGAGAAACACATCAAGGCAGTGCATCTTAAAATAAGCGATTATAAATGCGCAGATTGTGAATACAAGACAAACAACAAGTATTATTTAGAGAAACACATCAAGGCAGTGCATCTTAAAATAAGCGACTATAAATGCGCAGATTGTGAATACAAGACAAACAACAAGTATTATTTAGAGATTCACATAAAGACGAAGCATCTTCAAATAAGCGATTATAAGTGCGCAGATTGTGAATACAAGACAAACAACAAGTATTATTTAGAGACACACATCAAGGCAGTGCATCTTAAAATAAGCGATTATAAATGCGCAGATTGTGAATACAAGACAAACTATAAGTCAAGTTTACAAAAGCACACAAAGACAATACATCTTAAGATAAGGGCTTTTAAGTGTGTAGAGTGTGAATACAACACAAACTCGAAGAAAAGTCTAGCAAAACACATAAAGGCAATACATCTTACAATAAGAGATTATAAATGTTGTAACGAACCCGGTTAG
- Protein Sequence
- MVKMYKCGICHRRYKTKTSLKAHVEKNHVDNEGGDVNKHSRCDYFITNTRNMKKRSPHLHVGGRRCQCAKCKFQVKRKYHLKSHIKIRQLNRGKYKCAHCEFKTDYRSYLKMHTKLAHLIQIDYKCRDCEFKTSYKRNLEKHIKAVHLKISDYKCEDCEYKTNNKYHLEKHIKAVHLKISDYKCEDCEYKTNYKYNLEIHIKTKHLKISDYKCAGCEYKTNNKYNLEKHIKAMHLKISDYKCADCEYKTNNKYNLEKHIKAMHLKISDYKCADCKYKTNNKYNLEIHIKTKHLKISDYKCADCEYKTNNKYHLEKHIKAVHLKISDYKCADCEYKTNNKYNLEKHIKAVHLKISDYKCADCKYKTNNKYNLEIHIKTKHLKISDYKCADCEYKTNNKYHLEKHIKAVHLKIIDYKCADCEYKTNNKYHLEKHIKAMHLKISDYKCADCEYKTNNKYNLEKHIKAVHLKISDYKCADCKYKTNNKYNLEIHIKTKHLKISDYKCADCEYKTNNKYHLEKHIKAVHLKISDYKCADCEYKPNNKYHLEKHIKAVHLKISDYKCADCEYKPNNKYNLEKHIKAVHLKISDYKCEDCEYKTNNKYNLEIHIKAKHLKISDYKCADCEYKTNNKYHLEKHIKAVHLKIIDYKCADCEYKTNYKYHLEKHIKAVHLKISDYKCADCEYKTNNKYHLEKHIKAVHLKISDYKCADCEYKPNNKYNLEKHVKAVHLKISDYKCEDCEYKTNNKYNLEIHIKAKHLKISDYKCADCEYKTNNKYHLEKHIKAVHLKIIDYKCADCEYKTNYKYHLEKHIKAVHLKISDYKCADCEYKPNNKYNLEKHIKAVHLKISDYKCEDCEYKTNYKYNLEKHVKAVHLKISDYKCEDCEYKTNNKYNLEIHIKAKHLKISDYKCADCEYKTNNKYHLEKHIKAVHLKIIDYKCADCEYKTNYKYHLEKHIKAVHLKISDYKCADCEYKTNNKYNLEIHIKTKHLKISDYTCADCEYKTNNKYYLEKHIKAVHLKISDYKCADCEYKTNNKYYLEKHIKAVHLKISDYKCADCEYKTNNKYYLEIHIKTKHLQISDYKCADCEYKTNNKYYLETHIKAVHLKISDYKCADCEYKTNYKSSLQKHTKTIHLKIRAFKCVECEYNTNSKKSLAKHIKAIHLTIRDYKCCNEPG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -