Mmel193738.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010005146.1:8715-12488[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 41 0.00083 0.097 16.6 0.6 1 23 19 42 19 42 0.94 2 41 0.25 29 8.8 2.9 1 23 103 126 103 126 0.97 3 41 0.012 1.4 13.0 0.5 1 23 132 155 132 155 0.98 4 41 0.046 5.4 11.1 0.9 5 23 165 184 164 184 0.96 5 41 0.0001 0.012 19.5 2.7 1 23 190 213 190 213 0.98 6 41 0.002 0.24 15.4 0.4 1 23 219 242 219 242 0.98 7 41 0.00021 0.025 18.5 0.4 1 23 248 271 248 271 0.98 8 41 0.00034 0.04 17.8 1.8 1 23 277 300 277 300 0.98 9 41 0.00025 0.029 18.2 2.0 1 23 306 329 306 329 0.98 10 41 0.00076 0.088 16.7 0.5 1 23 335 358 335 358 0.98 11 41 0.00056 0.065 17.2 0.5 1 23 364 387 364 387 0.98 12 41 0.00056 0.065 17.2 0.5 1 23 393 416 393 416 0.98 13 41 0.00086 0.1 16.6 0.3 1 23 422 445 422 445 0.98 14 41 0.00056 0.065 17.2 0.5 1 23 451 474 451 474 0.98 15 41 0.00086 0.1 16.6 1.9 1 23 480 503 480 503 0.98 16 41 0.00042 0.049 17.5 1.0 1 23 509 532 509 532 0.98 17 41 0.00014 0.016 19.0 2.1 1 23 538 561 538 561 0.98 18 41 0.00025 0.029 18.2 2.0 1 23 567 590 567 590 0.98 19 41 0.0001 0.012 19.5 2.7 1 23 596 619 596 619 0.98 20 41 0.00015 0.018 18.9 0.9 1 23 625 648 625 648 0.98 21 41 0.00025 0.029 18.2 2.0 1 23 654 677 654 677 0.98 22 41 0.0015 0.17 15.8 0.9 1 23 683 706 683 706 0.98 23 41 0.00026 0.03 18.2 0.7 1 23 712 735 712 735 0.98 24 41 0.00073 0.085 16.8 2.0 1 23 741 764 741 764 0.98 25 41 0.0001 0.012 19.5 2.7 1 23 770 793 770 793 0.98 26 41 2.5e-05 0.0029 21.4 0.9 1 23 799 822 799 822 0.98 27 41 0.00025 0.029 18.2 2.0 1 23 828 851 828 851 0.98 28 41 0.00018 0.021 18.7 1.1 1 23 857 880 857 880 0.98 29 41 0.00016 0.019 18.8 2.4 1 23 886 909 886 909 0.98 30 41 0.00036 0.042 17.7 0.7 1 23 915 938 915 938 0.98 31 41 0.00025 0.029 18.2 2.0 1 23 944 967 944 967 0.98 32 41 0.00013 0.015 19.2 0.6 1 23 973 996 973 996 0.98 33 41 0.0001 0.012 19.5 2.7 1 23 1002 1025 1002 1025 0.98 34 41 5.4e-05 0.0063 20.3 0.8 1 23 1031 1054 1031 1054 0.98 35 41 0.00015 0.018 18.9 0.9 1 23 1060 1083 1060 1083 0.98 36 41 0.00027 0.032 18.1 0.3 1 23 1089 1112 1089 1112 0.98 37 41 0.00025 0.029 18.2 2.0 1 23 1118 1141 1118 1141 0.98 38 41 0.00013 0.015 19.2 0.6 1 23 1147 1170 1147 1170 0.98 39 41 0.00034 0.04 17.8 1.8 1 23 1176 1199 1176 1199 0.98 40 41 0.0012 0.14 16.1 3.9 1 23 1205 1228 1205 1228 0.98 41 41 0.047 5.5 11.1 2.9 1 21 1234 1254 1234 1255 0.95
Sequence Information
- Coding Sequence
- ATGTACAACGCCGACTTCAGGCAACACACTTATGAGCATTACGGGGTGAAATTGTACAAATGTAGTATTTGTGACAGAAGATACAAGGCGAAGGAATCTCTCAAGGCGCACGTGGAAAATAATCATGCTGACAATGAAGGAACATGTGACTACTTCAAAGCTACTATTAAAAATATAAAACAGAGATCTCGACCCTTACAGCATGTTGGTGGAAAACTTTGTCAATGCTCAAAATGCAAGCCTCCAACAGGGTCCAAACGTTACCTAAAGCCACTTATAAAAATAAAACATCTAAACAGAGGCAAATATAAGTGCGCAAATTGCGAGTTTAAGACATATTACAGGACTTACTTGCAAATGCATATGAAGATAAAACATCTCATGGAATCTAATTATAAATGCATGGAGTGTGAATTCGAGACAGGTTATAAGTCAAGTTTACAAATACACATAAAAACAATACATCTGAAACAAAATTATTATAAATTCGCAGAGTGTAAATACAAGACGAACCACAAGCCAAATTTAAAAAGACACATAAAAACAATACATCTTAAAGTAAGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAATCACAAGTCAAGTTTAGAAAGACACATAAAAACAATACATCTTAATGTATGGGATTATAAATGCGTAGAGTGTGAATACAAGACAAACGTCAAGCCAAATTTAGAAAAACACATAAAAACAATACATCTTAAAGTATGCGATTATAAATGCGAAGAGTGTGAATACATAACAAACTACAAGTCAGCATTAGAAAAACACATAAAAACAATACATCTTAAAGTATGCCATTATAAATGCGAAGAGTGTGAATACATGACAAACCACAAGCCAAATTTAGAAAAACACTTAAAAACAATACATCTTAAAGTAAGCGATTATAAATGTGAAGAGTGTGAATACAAGACAAACCACAAGCCAAATTTAGAAAAACACATAAAAACAATACATCTTAAAGTATGGGATTATAAATGCGTAGAGTGTGAATACAAGACAAACGACAAGCCAAATTTAGAAAAACACATAAAAAGAATACATCTTAAAGTAAGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACGTCAAGCCAAATTTAGAAAAACACATAAAAACAATACATCTTAAAGTATGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACGTCAAGCCAAATTTAGAAAAACACATAAAAACAATACATCTTAAAGTATGGGATTATAAATGCGTAGAGTGTGAATACAAGACAAACGACAAGCCAAATTTAGAAAAACACATAAAAATAATACATCTTAAAGTAAGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACGTCAAGCCAAATTTAGAAAAACACATAAAAACAATACATCTTAAAGTAAGCGATTATAAATGCGTAGAGTGTGAATACAAGACAAACCACAAGCCAAATTTAGAAAAACACATAAAAACAATACATCTTAAAGTATGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACGACAAGCCAAGTTTAGAAAAACACATAAAAACAAGACATCTTAAAGTAAGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACCACAAGTCAGCATTAGAAAAACACATAAAAACAATACATCTTAAAGTAAGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACCACAAGCCAAATTTAGAAAAACACATAAAAACAATACATCTTAAAGTAAGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACCACAAGTCAAGTTTAGAAAGACACATAAAAACAATACATCTTAAAGGATGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACTACAAGTCAGCATTAGAAAAACACATAAAAACAATACATCTTAAAGTAAGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACCACAAGCCAAATTTAGAAAAACACATAAAAACAATACATCTTAAAGTAAGCGATTATAAATGCGTAGAGTGTGAATACAAGACAAACGACAAGCCAAGTTTAGAAAAACACATAAAAACAAGACATCTTAAAGTATGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACTACAAGTCAGCATTAGAAAACCACATAAAAACAATACATCTTAAAGTATGCGACTATAAATGCGAAGAGTGTGAATACAAGACAAACCACAAGCCAAGTTTAGAAAAACACATAAAAACAATACATCTTAAAGTAAGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACCACAAGTCAAGTTTAGAAAGACACATAAAAACAATACATCTTAAAGCATGCGATTATAAATGCGAAGAGTGTGAATACAAGACGAGCGACAAGCCAAATTTAAAAAGACACATAAAAACAATACATCTTAAAGTAAGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACCACAAGCCAAATTTAGAAAAACACATAAAAACAATACATCTTAAAGTATGCGACTATAAATGCGAAGAGTGTGAATACATGACAAACTACAAGTCAGCATTAGAAAAACACATAAAAACAAGACATCTTAAAGTAAGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAAACACAAGCCAAATTTAGAAAAACACATAAAAACAATACATCTTAAAGTATGCGACTATAAATGCGAAGAGTGTGAATACATGACAAACGACAAGCCAAGTTTAGAAAAACACATAAAAACAAAACATCTTAAAGTATGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACCACAAGCCAAATTTAGAAAAACACATAAAAACAATACATCTTAAAGTATGCGATTATAAATGCGAAGAGTGTGAATACATGACAAACTACAAGTCAGCATTAGAAAAACACATAAAAACAATACATCTTAAAGTATGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACCACAAGTCAAGTTTAGAAAGACACATAAAAACAATACATCTTAAAGGATGCGATTATAAATGCGAAGAGTGTGAATACAAGACGAGCGACAAGCCAAATTTAAAAAGACACATAAAATCAATACATCTTAAAGTAAGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACTACAAGTCAGCATTAGAAAAACACATAAAAACAATACATCTTAAAGTATGCGACTATAAATGCGAAGAGTGTGAATACATGACAAACGACAAGCCAAGTTTAGAAAAACACATAAAAACAATACATCTTAAAGTATGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACCACAAGCCAAATTTAGAAAAACACATAAAAACAATACATCTTAAAGTATGCGATTATAAATGCGAAGAGTGTGAATACATGACAAACTACAAGTCAGCATTAGAAAAACACATAAAAACAATACATCTTAAAGTATGCCATTATAAATGCGAAGAGTGTGAATACATGACAAACCACAAGCCAAATTTAGAAAAACACTTAAAAACAATACATCTTAAAGTAAGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACCACAAGCCACATTTAGAAAAACACATAAAAACAGTACATCTTAAAGTATGCGATTATAAATGCGAAGAGTGTGAATACAAGACAAACCACAAGCCACATTTAGAAAAACATAAAAACAGTACATCTTAA
- Protein Sequence
- MYNADFRQHTYEHYGVKLYKCSICDRRYKAKESLKAHVENNHADNEGTCDYFKATIKNIKQRSRPLQHVGGKLCQCSKCKPPTGSKRYLKPLIKIKHLNRGKYKCANCEFKTYYRTYLQMHMKIKHLMESNYKCMECEFETGYKSSLQIHIKTIHLKQNYYKFAECKYKTNHKPNLKRHIKTIHLKVSDYKCEECEYKTNHKSSLERHIKTIHLNVWDYKCVECEYKTNVKPNLEKHIKTIHLKVCDYKCEECEYITNYKSALEKHIKTIHLKVCHYKCEECEYMTNHKPNLEKHLKTIHLKVSDYKCEECEYKTNHKPNLEKHIKTIHLKVWDYKCVECEYKTNDKPNLEKHIKRIHLKVSDYKCEECEYKTNVKPNLEKHIKTIHLKVCDYKCEECEYKTNVKPNLEKHIKTIHLKVWDYKCVECEYKTNDKPNLEKHIKIIHLKVSDYKCEECEYKTNVKPNLEKHIKTIHLKVSDYKCVECEYKTNHKPNLEKHIKTIHLKVCDYKCEECEYKTNDKPSLEKHIKTRHLKVSDYKCEECEYKTNHKSALEKHIKTIHLKVSDYKCEECEYKTNHKPNLEKHIKTIHLKVSDYKCEECEYKTNHKSSLERHIKTIHLKGCDYKCEECEYKTNYKSALEKHIKTIHLKVSDYKCEECEYKTNHKPNLEKHIKTIHLKVSDYKCVECEYKTNDKPSLEKHIKTRHLKVCDYKCEECEYKTNYKSALENHIKTIHLKVCDYKCEECEYKTNHKPSLEKHIKTIHLKVSDYKCEECEYKTNHKSSLERHIKTIHLKACDYKCEECEYKTSDKPNLKRHIKTIHLKVSDYKCEECEYKTNHKPNLEKHIKTIHLKVCDYKCEECEYMTNYKSALEKHIKTRHLKVSDYKCEECEYKTKHKPNLEKHIKTIHLKVCDYKCEECEYMTNDKPSLEKHIKTKHLKVCDYKCEECEYKTNHKPNLEKHIKTIHLKVCDYKCEECEYMTNYKSALEKHIKTIHLKVCDYKCEECEYKTNHKSSLERHIKTIHLKGCDYKCEECEYKTSDKPNLKRHIKSIHLKVSDYKCEECEYKTNYKSALEKHIKTIHLKVCDYKCEECEYMTNDKPSLEKHIKTIHLKVCDYKCEECEYKTNHKPNLEKHIKTIHLKVCDYKCEECEYMTNYKSALEKHIKTIHLKVCHYKCEECEYMTNHKPNLEKHLKTIHLKVSDYKCEECEYKTNHKPHLEKHIKTVHLKVCDYKCEECEYKTNHKPHLEKHKNSTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -