Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5.6 2.5e+03 2.1 1.7 14 44 8 35 3 35 0.84

2 12 0.27 1.2e+02 6.3 0.2 17 44 40 64 36 64 0.88

3 12 0.28 1.3e+02 6.2 0.2 17 44 69 93 65 93 0.88

4 12 0.27 1.2e+02 6.3 0.2 17 44 98 122 94 122 0.88

5 12 1.4 6.5e+02 4.0 0.1 17 44 127 151 123 151 0.88

6 12 0.099 44 7.7 0.4 14 44 153 180 152 180 0.91

7 12 0.27 1.2e+02 6.3 0.2 17 44 185 209 181 209 0.88

8 12 0.2 89 6.7 0.1 17 44 214 238 210 238 0.89

9 12 0.27 1.2e+02 6.3 0.2 17 44 243 267 239 267 0.88

10 12 0.24 1.1e+02 6.4 0.3 17 44 272 296 268 296 0.88

11 12 0.2 89 6.7 0.1 17 44 301 325 297 325 0.89

12 12 0.37 1.7e+02 5.8 0.2 18 44 331 354 326 354 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5.6	2.5e+03	2.1	1.7	14	44	8	35	3	35	0.84
2	12	0.27	1.2e+02	6.3	0.2	17	44	40	64	36	64	0.88
3	12	0.28	1.3e+02	6.2	0.2	17	44	69	93	65	93	0.88
4	12	0.27	1.2e+02	6.3	0.2	17	44	98	122	94	122	0.88
5	12	1.4	6.5e+02	4.0	0.1	17	44	127	151	123	151	0.88
6	12	0.099	44	7.7	0.4	14	44	153	180	152	180	0.91
7	12	0.27	1.2e+02	6.3	0.2	17	44	185	209	181	209	0.88
8	12	0.2	89	6.7	0.1	17	44	214	238	210	238	0.89
9	12	0.27	1.2e+02	6.3	0.2	17	44	243	267	239	267	0.88
10	12	0.24	1.1e+02	6.4	0.3	17	44	272	296	268	296	0.88
11	12	0.2	89	6.7	0.1	17	44	301	325	297	325	0.89
12	12	0.37	1.7e+02	5.8	0.2	18	44	331	354	326	354	0.86

Coding Sequence: ATGGAAACAAATCATCCGAAACAAAAGCATTATAAATGCGCACAGTGTGAATTCCAGACAAACTTTAAGTCAAATGTAGAAATACATATGGAAACAAAACATCCGAAACAAAAGGATTATAAATGCGCACAGTGTGAATTCCAGACAAACTTTAAGTCAAATTTAGAATTACATATGGAAACAAAACATCCGAAACAAAAGGATTATAAATGCGCACAGTGTGAATTCCAGACAAACTTTAAGTCAAATTTAGAAATACATATGGAAACAAAACATCCGAAACAAAAGGATTATAAATGCGCACAGTGTGAATTCCAGACAAACTTTAAGTCAAATTTAGAATTACATATGGAAACAAAACATCCGAAACAAAAGGATTATAAATGCGCACAGTGTGAATTCCAGACAAACTTTAAGTCAAATTTAGAAATACATATGGAAGCAAAACATCCGAAACAAAAGAATTATAAATGCGCACAGTGTGAATTCCAGACAAACTTTAAGTCAAATTTAGAAGTACATATGGAAACAAAACATCCGAAACAAAAGGATTATAAATGCGCACAATGTGAATTCCAGACAAACTTTAAGTCAAATTTAGAATTACATATGGAAACAAAACATCCGAAACAAAAGGATTATAAATGCGCACAGTGTGAATTCCAGACAAACTTTAAGTCAAATTTAGAAGTACATATGGAAACAAAACATCCGAAACAAAAGGATTATAAATGCGCACAATGTGAATTCCAGACAAACTTTAAGTCAAATTTAGAATTACATATGGAAACAAAACATCCGAAACAAAATTATTATAAATGCGCACAGTGTGAATTTCAGACAAACTTTAAGTCAAATTTAGAATTACATATGGAAACAAAACATCCGAAACAAAAGGATTATAAATGCGCACAGTGTGAATTCCAGACAAACTTTAAGTCAAATTTAGAAGTACATATGGAAACAAAACATCCGAAACAAAAGGATTATAAATGCGCACAGTGTGAATTCCAGACAAACTTTAGGTCAAATTTAGAAGTACATATGGAAACAAAACATCCGAAACAAAAGGATTATTAA
Protein Sequence: METNHPKQKHYKCAQCEFQTNFKSNVEIHMETKHPKQKDYKCAQCEFQTNFKSNLELHMETKHPKQKDYKCAQCEFQTNFKSNLEIHMETKHPKQKDYKCAQCEFQTNFKSNLELHMETKHPKQKDYKCAQCEFQTNFKSNLEIHMEAKHPKQKNYKCAQCEFQTNFKSNLEVHMETKHPKQKDYKCAQCEFQTNFKSNLELHMETKHPKQKDYKCAQCEFQTNFKSNLEVHMETKHPKQKDYKCAQCEFQTNFKSNLELHMETKHPKQNYYKCAQCEFQTNFKSNLELHMETKHPKQKDYKCAQCEFQTNFKSNLEVHMETKHPKQKDYKCAQCEFQTNFRSNLEVHMETKHPKQKDY

Sequence clustering based on sequence similarity using MMseqs2