Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 2e-12 5.4e-10 42.3 0.0 1 42 18 59 18 61 0.91

2 2 0.0015 0.4 13.9 0.0 20 37 84 102 81 108 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	2e-12	5.4e-10	42.3	0.0	1	42	18	59	18	61	0.91
2	2	0.0015	0.4	13.9	0.0	20	37	84	102	81	108	0.84

Coding Sequence: ATGGGTCGTACTTATAAAAGAAAGATTGGAAATAGGCATTATAAAAACTATGATGAAGACAAGTTACAAAATGCCGTGCAAGCTATCCATAGAGGACAATTAAGTTATAGGGAAGCTGCGAAACGATATGGTATCCCTTGGAAAACGCTGTGGAACAAAGTCATGGGAAAATACACGCAAACTGTGGGCGGCCAAACACTATTAACAGAAGTTGAAGAGAGACATCTACTTGACGTGGTACTGGCAGCAAGTCAGCTTGGCAGACGATATGGCATCCCTTGGAAAACGCTGTGGCACAAAGTCAAGGGAAAAGACACGCAAACTGTGGGCGGCCAAACACTATTAACAGAAGTTGAAGAGAGACATCTAGTTGACGTGGTACTGGCAGCAAGTGAGATTGGCAGTCCATTAACTTCGTTTGATCTCAGAGTGGTACTTAAAAAATATCTGGATGAGAGCGGAAAGACAATAAGAAAGCTTGCGAACAATTTGCCAGGTAATGACTGGGCCTTGAATTTTTCAGGCCGGCACAAACATAGATTGTTTCAAAGAACCTGTCAAAACATCAAAAGAGTTCGTGCAGAAAAGACAGAAGAAATGGATAACTTCCAGAATTTAGAAAGTAGTCTGGAATGCGTCCCTCCAGGTAACATTCTAAATTTTGATGAAATGAATTTGTCAGACGACCCGGGATCTCACAAATGTATCTTTCGCCGTGGTATGAAATATCCAGAGCGTGTTATGAACACTTCAAAGGCTTCTATTTCAGTTATGTTTGCGATAACAGGAGTGGGTGATGTCTTATCGCCATATACAGTTTACAAGGCAGAAAGATTATACGACCTATGGACCGTAGGGGGTCCAAAAAAGGCCCGATACAATCGGTCCAAGTCCCGATGGTTTGATTCCTGTACTTTTACAGATTGGGCGTTTTTTAATTTCTTTTTGGCCGATTTATTAAGGAAATTCCTTACCTACTAA
Protein Sequence: MGRTYKRKIGNRHYKNYDEDKLQNAVQAIHRGQLSYREAAKRYGIPWKTLWNKVMGKYTQTVGGQTLLTEVEERHLLDVVLAASQLGRRYGIPWKTLWHKVKGKDTQTVGGQTLLTEVEERHLVDVVLAASEIGSPLTSFDLRVVLKKYLDESGKTIRKLANNLPGNDWALNFSGRHKHRLFQRTCQNIKRVRAEKTEEMDNFQNLESSLECVPPGNILNFDEMNLSDDPGSHKCIFRRGMKYPERVMNTSKASISVMFAITGVGDVLSPYTVYKAERLYDLWTVGGPKKARYNRSKSRWFDSCTFTDWAFFNFFLADLLRKFLTY

Sequence clustering based on sequence similarity using MMseqs2