Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.63 1.7e+02 5.5 0.0 27 39 37 49 35 52 0.88

2 3 6e-18 1.6e-15 60.0 0.0 1 45 66 111 66 111 0.98

3 3 1.1 2.9e+02 4.8 0.0 1 13 118 130 118 133 0.90

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.63	1.7e+02	5.5	27	39	37	49	35	52	0.88
2	3	6e-18	1.6e-15	60.0	1	45	66	111	66	111	0.98
3	3	1.1	2.9e+02	4.8	1	13	118	130	118	133	0.90

Coding Sequence: ATGCCATACAATTATACTAGTGGTACTGTACTAAAATCATGTGTATTATCATATTTTAGTAAAATAAATATTCACAAAGAAAAATATAATTTAATAAATTTTATTTTAGGTATACCAAGTAGTACTTTATATAAAATTGCAAGGCGAGAAGGTATTAGACTCGCAGCACCATTTAATGCAGCACCAACGACGTGGACTCCTGAAGATTTAGAAAAAGCCTTAGAATCTATCAGATCTGGACAAACGTCAGTACAAAAAGCTTCCACAGAATTCGGTATACCTACAGGTACACTTTATGGTAGGTGTAAAAGGGAAGGCATAGAACTGTCCAGGTCGAACCCTACACCTTGGTCTGAAGATGCCATGGGTGAAGCTCTGGAAGCAGTTAGTTTTAAACTGGCTTTCACTTTAGAACATAAAATTTTTTTAGTCCAGGCTTATTTTCGAAGTGGTAATAAAATCAATGGTTTATGGGTTTATTCAGTTCAATATTGCATGGTAGAATTTCAAGTTGAAAAATCAGGCAGCGGAGCAGTTAAGAAACATACACCTCAAGTTGTCAATCGTGTTGAAGAAATAATGGAAAATGAGCCACAAACATCTGTTCGACATTTGAGTCAACAAATAAACCTTTCTGTTGGTACAACTCACAAGTTATTAAAAAAAGATATGCAACTTTATCCATACCGTGTCACAGCAGTACAAGAATTGTTAGAAATTGATTACCCACGTAGACTACAGTTTTGTAATTGA
Protein Sequence: MPYNYTSGTVLKSCVLSYFSKINIHKEKYNLINFILGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVSFKLAFTLEHKIFLVQAYFRSGNKINGLWVYSVQYCMVEFQVEKSGSGAVKKHTPQVVNRVEEIMENEPQTSVRHLSQQINLSVGTTHKLLKKDMQLYPYRVTAVQELLEIDYPRRLQFCN

Sequence clustering based on sequence similarity using MMseqs2