Mdia000326.1
Basic Information
- Insect
- Meloe dianella
- Gene Symbol
- -
- Assembly
- GCA_028455855.1
- Location
- JAPTHL010000041.1:1637287-1638653[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.2 3.7e+02 1.5 0.1 2 9 102 109 101 121 0.77 2 11 0.093 5.6 7.2 0.6 2 20 127 145 126 147 0.93 3 11 0.0003 0.018 15.1 0.9 1 23 159 181 159 181 0.98 4 11 0.0013 0.077 13.1 3.4 1 20 222 241 222 242 0.96 5 11 0.21 13 6.1 0.2 2 23 246 266 245 266 0.94 6 11 0.0073 0.44 10.7 0.1 3 23 273 294 271 294 0.94 7 11 0.32 19 5.6 4.1 1 23 299 321 299 321 0.92 8 11 2.5e-06 0.00015 21.6 1.3 1 23 327 350 327 350 0.96 9 11 8.7e-05 0.0052 16.8 4.3 1 23 356 378 356 378 0.96 10 11 6.1e-05 0.0037 17.3 0.9 1 23 384 407 384 407 0.98 11 11 2.2e-05 0.0014 18.6 0.6 2 23 416 437 415 437 0.95
Sequence Information
- Coding Sequence
- ATGGATATGAGAATTTGTAGGTTATGTTTAGGTAAATTTCCCGTTTATTTTTCACTATTGAACACACCAATTTCAAATATGTTAGGATCATTAACATCAATCAAGATAGTTGAAAATGATGAACTATCAACAGTGGCATGTACAAAATGCGTATTAAATTTGAAATTAGCATTTAATATACAACAGAATATTATCAGAATTGATGAGAAATTACGTGATAATTATCAAAATGATATACAAATGAAAGAGGAGATCTGCGATGTGACCGTTGAATCAATCAAACCATTGAAGATTTGTGATGATTCATGTAAGATTTGCGGAATGCCGATTCAACAGGATGCGTATAAACATATTCAAGAACATTTCCAATCGACACAAGAATGTCAGAATTGTAATGGAAAGTTCAAAAATATCCGCGATTACCGACAACATTTAACAAATTGCCGCCAATTAAAAGATGGAAATAAGCAATGTTATACATGTGAAACGTGTGATATTAAATTTGGTTATCAGTCATTGTACAACTTACATGTAAAAaatcatgataatactcaaaacgttgatagttacaatgatgatgatgatgatagtagtagtgattacaaGCCAGAGAAACGTCTTAAAGGTAAATATTTCCGTATGATAGTAACCGACAATAAGATCTATCGTTGTAATGTTTGTTCGAAAGTCTATAACTCACGTAAACAATTTAATAATCACAAACATGATCGTAAAGAATGTCCAATATGTAAAGCAAGTATAACAGGAAGTAATTGGACGAAACATGTAAAGAATCACGCGTCCGGCAAACAAATTTGTGAATTATGCGGTGCAACATTGAGAAGTTTAGCAAGTTTAAGGGGGCACATGTCGTACTTTCACAGTCAACAACGATTTAAATGTGAAGAATGCAATTTAATATTTAAATTACGTTATAGGTATATGATACATTGTAAATCACATAAAGGCGAAAAAGATCATATTTGTGATCAATGTGGTCGTGGTTTTGTAACGAAACAGTATTTAAATAACCATATACGTATCAAACATATGAAATTGCGTCCACATATTTGTGAATTTTGCAAAAGAGGATTCTCAACTAAAAAGGCATTAAGGACACATCGACGACAACATACAAATGAAACACCATATCGTTGTGAAGTGTGCGGTGATGGTTTCCGGCAGAATGTTTCATTACGTACACATCGCAAATCGAAACATAATATTATTGAACCGAAAACTTGTGCATGTGATGTGTGTGGGAAAGAATTCAGTAGTCGACAAGCTATTATAAGTCATATGAGATTACATTAA
- Protein Sequence
- MDMRICRLCLGKFPVYFSLLNTPISNMLGSLTSIKIVENDELSTVACTKCVLNLKLAFNIQQNIIRIDEKLRDNYQNDIQMKEEICDVTVESIKPLKICDDSCKICGMPIQQDAYKHIQEHFQSTQECQNCNGKFKNIRDYRQHLTNCRQLKDGNKQCYTCETCDIKFGYQSLYNLHVKNHDNTQNVDSYNDDDDDSSSDYKPEKRLKGKYFRMIVTDNKIYRCNVCSKVYNSRKQFNNHKHDRKECPICKASITGSNWTKHVKNHASGKQICELCGATLRSLASLRGHMSYFHSQQRFKCEECNLIFKLRYRYMIHCKSHKGEKDHICDQCGRGFVTKQYLNNHIRIKHMKLRPHICEFCKRGFSTKKALRTHRRQHTNETPYRCEVCGDGFRQNVSLRTHRKSKHNIIEPKTCACDVCGKEFSSRQAIISHMRLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -