Mdia000322.1
Basic Information
- Insect
- Meloe dianella
- Gene Symbol
- -
- Assembly
- GCA_028455855.1
- Location
- JAPTHL010000041.1:1618303-1619722[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.25 15 5.9 0.2 3 23 111 129 110 129 0.90 2 11 0.003 0.18 11.9 0.5 2 21 135 154 134 155 0.93 3 11 8.9e-05 0.0053 16.7 1.5 1 23 167 189 167 189 0.98 4 11 0.0071 0.43 10.8 3.2 1 20 236 255 236 256 0.96 5 11 0.21 13 6.1 0.2 2 23 260 280 259 280 0.94 6 11 0.012 0.71 10.1 0.5 3 23 287 308 285 308 0.93 7 11 0.00011 0.0064 16.5 5.1 1 23 313 335 313 335 0.99 8 11 5.2e-05 0.0031 17.5 3.6 1 23 341 364 341 364 0.94 9 11 0.00031 0.019 15.0 3.3 1 23 370 392 370 392 0.96 10 11 1.7e-06 0.0001 22.1 0.9 1 23 398 421 398 421 0.98 11 11 0.00058 0.035 14.2 1.6 2 23 430 451 429 451 0.95
Sequence Information
- Coding Sequence
- ATGGTGAAGAAAATTTGTAGGTTATGTTTGGGTGCAGCTCCAATTTGTTTTTCATTATTAACATCTGATATTTCAAAAATGCTTGAATCTTTAACATCAATCAAGGTAACCGAAAATGATCAATTATCAACAGTGAGTTGTACGAAATGCTTATTAAATGTTAAATTAGCATTTAATATACAGCAGAACATATTGAAAGTTGATGAGAAATTACGAAATAACCATTTAAATAACAAAGATATAAAGAAAGAAATCTGCGAAGTGATGCTTGAAGAGAAAGATGAAATATTACAAACAACAACAGAATCATTAGAAATTTGTGATAATTTATGTAAAATTTGTGGTATCTCCGTTAAAGATAATATGATGAATCATATACAAGAACATTTCCAATCAGTACAAGAATGTAATAATTGTAATCAAAATTTCAAAAATATCTACGAATATCGTCAACATTTATTAAATTGTCAACAGCAAAACGATGAGAAAAAAGATTCCTATATATGTGAGAAATGCGGTAGTAAATTTCGTTATGAATCTCtatacaatttacatatgaaaaatcatgaaaatgataataatattgatagtgatgatggtggtggtggtgatgacgacgatggtaacgatgctgaggatggtgaagttagtgaGAAACTCTTAAATGGTCAATATTTCCGTGTCGTGATCGACGATAAAATCAGTTATCGTTGTAATACCTGTTTAAGAGTCTATAAATCGCGTAAACAATTCATAAAACATACACACGATCGCAAAAGATGTCCAGTATGTGATGCAAATGTTACTGTAAGTAATTGGAAGAAACATGTGAGCAATCACAGTTCTGGACCGCAAATATGTGAATTATGCGGTGCAACATTACGTAGTCTTGAAAGTTTACGAGGCCATATGACACATACGCACAGTAAACAACGCTATAAATGCGAAGAATGCAATTTAACATTTAAAGTGCATTATAATTATTTGAAACATCGCAAATCACATACTGGTGAAAAAGATCACATTTGTGATCAATGTGGTCGTGGCTTTATAACAAAACATTATTTAAATAAACATGTAAAATTGAAACATTTAAAATTACGTCCGCATATCTGTGAATTTTGCAAAAGAGGATTCTCGAGTAAGAATGCATTAAGTACACACCGACGACAACATACAAATGAAACGCCATATCGTTGTGAAGTGTGTGGTGAAGGTTTCCGGCAGAATGTTTCATTACGTACACATCGCAAATCGAAACACAATATCGTTGAACCGAAAACGTGTGCATGTGAAGTTTGTGGAAAGGAATTCGGCAGTCGACAGGCCATTCATAGTCATATGAGATTGCATTAA
- Protein Sequence
- MVKKICRLCLGAAPICFSLLTSDISKMLESLTSIKVTENDQLSTVSCTKCLLNVKLAFNIQQNILKVDEKLRNNHLNNKDIKKEICEVMLEEKDEILQTTTESLEICDNLCKICGISVKDNMMNHIQEHFQSVQECNNCNQNFKNIYEYRQHLLNCQQQNDEKKDSYICEKCGSKFRYESLYNLHMKNHENDNNIDSDDGGGGDDDDGNDAEDGEVSEKLLNGQYFRVVIDDKISYRCNTCLRVYKSRKQFIKHTHDRKRCPVCDANVTVSNWKKHVSNHSSGPQICELCGATLRSLESLRGHMTHTHSKQRYKCEECNLTFKVHYNYLKHRKSHTGEKDHICDQCGRGFITKHYLNKHVKLKHLKLRPHICEFCKRGFSSKNALSTHRRQHTNETPYRCEVCGEGFRQNVSLRTHRKSKHNIVEPKTCACEVCGKEFGSRQAIHSHMRLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01022480;
- 90% Identity
- -
- 80% Identity
- -