Mdia010490.1
Basic Information
- Insect
- Meloe dianella
- Gene Symbol
- Prdm15
- Assembly
- GCA_028455855.1
- Location
- JAPTHL010000048.1:4434645-4437182[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.8e-06 0.00041 20.3 1.5 2 23 238 260 237 260 0.96 2 11 0.004 0.24 11.5 2.2 1 23 362 384 362 384 0.98 3 11 0.0034 0.2 11.8 5.0 1 21 388 408 388 409 0.93 4 11 0.00024 0.014 15.4 2.0 1 23 414 439 414 439 0.97 5 11 4.6 2.8e+02 1.9 3.7 1 19 443 461 443 463 0.95 6 11 3.3e-07 2e-05 24.4 1.7 1 23 474 496 474 496 0.99 7 11 0.065 3.9 7.7 0.2 3 23 518 538 516 538 0.96 8 11 0.016 0.94 9.7 7.4 1 23 543 565 543 565 0.98 9 11 3.1e-06 0.00019 21.3 2.7 1 23 571 593 571 593 0.98 10 11 4.1e-05 0.0025 17.8 4.2 2 23 599 621 598 621 0.96 11 11 1.2e-05 0.00072 19.5 0.6 1 23 637 660 637 660 0.98
Sequence Information
- Coding Sequence
- ATGAATCAACATTGTAATATTTGTGGTGAATCTCATATATCTAATGATTGTACATTAATTAAAATAATCAATTACGTACACGATAATGAAATTCCATCACGTGCTAAATTAAGTTTACCAAATTTCCTACAATTACAAATACTCACAGATGGTTCTTATACGGTGGTAACAAAAGAATTCTTAAAAAAGGGCACAAAATTTGGACCATTTATAGCGAGGAGGGTTGACGAAATTGATCCTGCATTAGAATTCCCATTGAAGATCTTCCAACAACAACAACAACAACACAATAATAATGATTGTTATTTAGATACAACAAACGAGAACGAATGTAACTGGTTAATATTCATAAGTGTCGCCGAATTCTTGGAGGAGCAAAATCTAATTTGTTATCAAGAAGATTCAGACATTTACTATGTTAGTATGAAAGATATTGAATCAAATCAGATGTTAAAAGTGTGGTATTCCCCATATTATGGGAAAATAATGAATAAAAACATGTTAATACCATCAACAATATCAAAAAATATAGAATTCGATTCACAATCAACAATACAATTGAAGAATATCGATTTGAATAGTTTGGTAAAGAGCCAACAGAAGATTGTTGAGAAAAAACAATGGCAATGCAAATTTTGTGATAAACTCGATAATGATATTGTAGCATTTGCAAAACATTTAATCGTACATTATCGTTTACAAATGAAGAAAATGTGTGATATTTGCAAGCAAACATTCAATTCTAAAAAAAATCTAACCAATCATTTGAAAATTGTCCATTGTTCCGAGGATAACGCATCGATCAATAATGATCAAATAGTAAACGTACCATTAGTAAAATCAAAGACTAAAGATCAATCAGTTGGTGGTCCACTATTAAACGACATGTTTACAGATAGCACAGATTTACAACAATTCGATATCAATACAACAATGAACAATAATCAAAATCTATTGGACGATGATATTGAGAATTTATTGTTGAATGATGAAGAGGAGAATTTTCAACATTTCAATTTCAATATAATCGATGAGAAACAACTGGACAAACAACAAAAAACCAACAATGATAAATTGAATGACTACGAATGTGATGTGTGTTTGAAGAAATTCAAAAAAATCCGTTTACTATTGATACATTTAAAACATCATACTGGCGAGTATTTATGTACGAAATGCTTAAAGATATTCTGTCGCAAAGAGAATTTAACAACGCATCTATGCAATTGCGAGAAATTCTATCAATGTGATTTATGTAATGATAACAAACAATTCACACAAAAGAAATATCTAAAACGGCATATATTAATTAAACATAAATTACGTTATTTTTGTAGTTTATGTCGCAATAATTATTATTCAAAATACGAATTATTACAACATAACTGTTGTAATGTATCGAATTTATTTAAAGAGAAATACGTATGTACAATATGCGATAAGATTTTCTATCGGCAAATTTATTTGAAGAAACATCTAAAAACACATTTACTCAAAAATAAACAACAAGAACAACAGAATACAACAACAACAACAAATCATTGTACGATATGCGAGATATGTGGTGTTTTATTAGAAAATCGAAATTCATTATATTTGCATTTGAAAAAACATAAAGAACCGAAATACCACTGTCAGATGTGTTTCAAGAAATTCCATCGATTCGATTCACTGAAAATACACGAAAACACCCACAAATCAACAGCCGATTTTGAATGCAACTTATGTACGAAAAAATTTAAAACCCAATCAACATTACAAGAACATCTCAATTATCATAATGGGAAATTATTGAAATGTAAATATTGCGAAATCGAATTCAAACATCGCAGTACATTAAATAAACACATAAAGAATAAACACAACAATAATAAGAATGATAATAATACAAAGATTCTATTACAATATTTCTCATGTCCAATATGCGATAAACGTATAAAATTACGAAGTTCACTATTGAGACATTTACGTAAAATCCATCCGAATGATTACAAAAATGTCGATTTAATAAACATAAAATCGAAAGTATTATTAACAAAAGACAACAATAAAGATGCGAAAATTGGCATTTCATTAGTGAAGGAATTGCAGAAACAACCGGATGAAGTTGTTGTTAAAAATGAAGATGATGATGATGTTGATAAAGAGGTGTGCTTATCAATTCCAGATTTGAGTGAGAGAGATCAGGAAATCACTTTAGATAACAACGCCTATATTTTAGAAAATGGTACAATTATCCAACCACAATTAGACTCAGATAACGTCATTATTTACGTCCTAGATCAATCATATTCTTAG
- Protein Sequence
- MNQHCNICGESHISNDCTLIKIINYVHDNEIPSRAKLSLPNFLQLQILTDGSYTVVTKEFLKKGTKFGPFIARRVDEIDPALEFPLKIFQQQQQQHNNNDCYLDTTNENECNWLIFISVAEFLEEQNLICYQEDSDIYYVSMKDIESNQMLKVWYSPYYGKIMNKNMLIPSTISKNIEFDSQSTIQLKNIDLNSLVKSQQKIVEKKQWQCKFCDKLDNDIVAFAKHLIVHYRLQMKKMCDICKQTFNSKKNLTNHLKIVHCSEDNASINNDQIVNVPLVKSKTKDQSVGGPLLNDMFTDSTDLQQFDINTTMNNNQNLLDDDIENLLLNDEEENFQHFNFNIIDEKQLDKQQKTNNDKLNDYECDVCLKKFKKIRLLLIHLKHHTGEYLCTKCLKIFCRKENLTTHLCNCEKFYQCDLCNDNKQFTQKKYLKRHILIKHKLRYFCSLCRNNYYSKYELLQHNCCNVSNLFKEKYVCTICDKIFYRQIYLKKHLKTHLLKNKQQEQQNTTTTTNHCTICEICGVLLENRNSLYLHLKKHKEPKYHCQMCFKKFHRFDSLKIHENTHKSTADFECNLCTKKFKTQSTLQEHLNYHNGKLLKCKYCEIEFKHRSTLNKHIKNKHNNNKNDNNTKILLQYFSCPICDKRIKLRSSLLRHLRKIHPNDYKNVDLINIKSKVLLTKDNNKDAKIGISLVKELQKQPDEVVVKNEDDDDVDKEVCLSIPDLSERDQEITLDNNAYILENGTIIQPQLDSDNVIIYVLDQSYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -