Mdia011857.1
Basic Information
- Insect
- Meloe dianella
- Gene Symbol
- ECU06_1150
- Assembly
- GCA_028455855.1
- Location
- JAPTHL010000047.1:3140466-3144227[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.067 4 7.7 1.0 1 23 252 275 252 275 0.95 2 14 1.8e-05 0.0011 18.9 1.6 1 23 324 346 324 346 0.98 3 14 1.3e-05 0.0008 19.3 0.2 1 23 352 375 352 375 0.97 4 14 1.1e-05 0.00067 19.6 0.2 1 23 381 403 381 403 0.98 5 14 2.1e-07 1.2e-05 25.0 1.1 1 23 409 431 409 431 0.98 6 14 3.5e-05 0.0021 18.0 0.7 1 23 437 459 437 459 0.98 7 14 5.8e-06 0.00035 20.5 4.0 1 23 465 487 465 487 0.98 8 14 1.4e-05 0.00084 19.3 1.9 1 21 493 513 493 514 0.95 9 14 0.00011 0.0067 16.4 2.1 1 23 543 565 543 565 0.96 10 14 0.002 0.12 12.5 0.9 3 22 622 641 621 643 0.89 11 14 1.5e-05 0.0009 19.2 2.3 1 23 661 684 661 684 0.95 12 14 7.3e-06 0.00044 20.2 1.1 1 23 726 748 726 748 0.98 13 14 9.1e-05 0.0055 16.7 6.2 1 23 754 776 754 777 0.95 14 14 0.00011 0.0063 16.5 0.3 3 23 791 811 789 811 0.96
Sequence Information
- Coding Sequence
- ATGATTGATAGTGAAGAAATTCCAACAAATTCACCACCACCACCAACTGCATTAACATCCAATGATAATACGATTAATATCAACCAAATGATTTGTCGTTTATGTGGCAATACAAATGAAAAATTAATTGGAATTTATAGCGAAGAAGGTGCATCGAATGAATTATCATACAAAATTAATGAGTACTTACCAATCAAAGTACAAGAAAATGATGATTTACCATTACAATGTTGTTTGAATTGTACAAGTACTTTATTGACATGGCATGAATTATTTATAACAACTGTAACAACAGCGAATCGATTTCAAGATTATTTGAATAATAAACAAATTATTGTTGATGTAGCTTTTGTCGACACAAAGGATATTGACACAGAATCAACCACACAAAGGGTGGTCCCAGATCAATTATCGTCAAGTCTGAATGATTTCTGTCAAATATCCAACAATTCATCATCACATAAAAAACAGATTCGTACATTTAAAAATAAGAAAAAAACACCAACAAATTTAACAACATTTTATAATCAATCAAATTTCGATACTTATATTATACCCGATATTGAACCAAATTTAATTAATGAGACTGCATCAACTGAACAACCTGAATTCAAGAttgatattgaagatactaaattattaacaagtaatgatgataaaagtatagctgcacgaacatcatcaacatcagatgatgatgatgatgatgatgatgatgatgaatcagatatagataaatcacaaaaattaGTGTTTGCTTGTCCATGTTGTTCTGTAGTGTTTGCATTAAAAAAAGATGTTAAAAATCATATAAAAACCCAACATCCTGGCAATGAGAATTTAACACCAATACCAAAAGATATACCAGAACAATCGAAATTTAATATTGAAAAAGAACGTCGTAAAAATAATAAATTAGATCAGGATTTAACGAATGCAGCAAAAGTAATTGTCGATGGTCGTATTTATTATAATTGTAAAGAATGTGGTAAAAGTCTACATTCACCATATACATATATGTGGCATATGAGAATACATACAGGTGAACGTCCTTATGTATGTGATTTATGTGGTAAACAATTTCGTGTATCACAAGGATTAGTACGTCATCTAAGAGAAACACATCAAGGTATAAAAAAATTCCCATGTGATCTATGTGGACGTATGTTTGCAACACGTAGAAATGTTGAAGAACATCGACGTATAcatacaaatgaacgtccatatgtatgtgatttatgtggtaaatcatttaaacagaaagcatcattatttgtacataaacgttcacataaaaattatttcccatttaaatgtaattattgtaatcaaggttttcgtacaaaacccccattaatggtacatataacacggcatacaggtgaaaaaccatataaatgtgagacttgtggtcgttgttttcgtataaaatatgaattgaaacggcatcgtttaatacattcagatgagaaaccattccattgtacaatatgtggtttgaactttcgacaaaaacgctatttaagaaaccatatgaAAATAAAATTAAATAGATTAACAACAACATTTGATGAAAATTCAATTGATGATGATTTACTATCATTAAATCACAATTCATCAATTACATATAAATGTGAATATTGTGAAACAATATTTGATAATAAAACAACATTAAATAATCATATTGTCCATCATAAGTCGATACGTAAAATAAAATGTAAACCAATAataattcaaacgaatgaacaattgaatattaatttggaatctaataatattgatttcgatgatgatgatgatgatgatgataaGCTAGAATCAAATGAAGAATTTGATAAATTTGCAAATCTAACAACAAAAATATGTATGAAATGCAATATAATATTCCGTACGAAAACATTATTAAAACGACATGTTTACGATAAACATAATATCAAATTGAAACGATCTAGACGTAAAAAATCTGAAATTATACCGAAATTCTTCTGTGATTTATGTGATAAAGGTTTCACACGAAAATCAGATATGGAGAAACATAGGAAATTGAAACATTATAATGATGAAAATGTACAAAATTTATTAACAACAAATAATGTAATAGAAACAACAAAATCGATGAATTGTGAAATTTTAAAACGTTGTAAAATCACAGATAGTGAAGATGGTAAAATTTATTATAAATGTGATCTATGCCCACGTATATTTAAACAATCTTACAATATGATCCGTCATCGTACAATCCATACAGGTATACGTTcgtattgttgtcatttatgtggtaaaagttttcgtatgtcgaatggtttaagtcgtcatatcaatgaacatcatttagTCCATGAGAAATCAACAACTATTGATAATATTATTTGTCGGATATGTGGATCGAATTTCAATCAAGAACGTTATTTAAAAGCACACATGAAAATCCATCCGAATATTGAAGAATTCAAACAATTGGAAATCGATACACCAAAGATTATTTAA
- Protein Sequence
- MIDSEEIPTNSPPPPTALTSNDNTININQMICRLCGNTNEKLIGIYSEEGASNELSYKINEYLPIKVQENDDLPLQCCLNCTSTLLTWHELFITTVTTANRFQDYLNNKQIIVDVAFVDTKDIDTESTTQRVVPDQLSSSLNDFCQISNNSSSHKKQIRTFKNKKKTPTNLTTFYNQSNFDTYIIPDIEPNLINETASTEQPEFKIDIEDTKLLTSNDDKSIAARTSSTSDDDDDDDDDDESDIDKSQKLVFACPCCSVVFALKKDVKNHIKTQHPGNENLTPIPKDIPEQSKFNIEKERRKNNKLDQDLTNAAKVIVDGRIYYNCKECGKSLHSPYTYMWHMRIHTGERPYVCDLCGKQFRVSQGLVRHLRETHQGIKKFPCDLCGRMFATRRNVEEHRRIHTNERPYVCDLCGKSFKQKASLFVHKRSHKNYFPFKCNYCNQGFRTKPPLMVHITRHTGEKPYKCETCGRCFRIKYELKRHRLIHSDEKPFHCTICGLNFRQKRYLRNHMKIKLNRLTTTFDENSIDDDLLSLNHNSSITYKCEYCETIFDNKTTLNNHIVHHKSIRKIKCKPIIIQTNEQLNINLESNNIDFDDDDDDDDKLESNEEFDKFANLTTKICMKCNIIFRTKTLLKRHVYDKHNIKLKRSRRKKSEIIPKFFCDLCDKGFTRKSDMEKHRKLKHYNDENVQNLLTTNNVIETTKSMNCEILKRCKITDSEDGKIYYKCDLCPRIFKQSYNMIRHRTIHTGIRSYCCHLCGKSFRMSNGLSRHINEHHLVHEKSTTIDNIICRICGSNFNQERYLKAHMKIHPNIEEFKQLEIDTPKII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -