Basic Information

Gene Symbol
JARID2
Assembly
GCA_028455855.1
Location
JAPTHL010000039.1:5390071-5396941[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.9e-22 4.3e-19 68.3 0.0 6 89 1420 1501 1416 1501 0.93

Sequence Information

Coding Sequence
ATGTTAATAAATCGCAGTGAAATGAAAAGGAAACGCAGAGATTGCCCATCACCTTTGTTAGATGATAATCCAAAAAGGACGAAAGTACATGCACAGAGAAAATTTGCACAAGGCTCGAATGTTAATAGTCCTGTATTGACACCAGTTAAAGAAATTGAAAAACAAGAAGTTGATGTAATGCCTGAACCAGTTGAACTTTTACCAATTAAACGGCCTAATACCGAAGATTTCTTGACGTTTCTTTGTTTCCGTGGTACACCAATTCTACCACCGAATTTGAATTTTTTCAATACAGCTTCTATTGTGGATACAAATGGTCAAGTACATGAAATTAAAAGTGAATCACCTAAAAATGGTCCTATTGATACATCGGCAATTGCTAAAGCATCTGGTTCAAATGAACGTCCATTTATTGCGTTTGGTGTACGTAAACGTGCTGATCCTATCGTGATTAGTAAACAAATGGATAAAAAACGACGGCATGCATTAGCTTTACAGGCATTAAGGCGAAAATATCAAGAACAACGAATGGCGAAAATCCGTGCTGTTACTATCAGTAAATTATCAGAAACTAAAAGTAGCAAGACATTATTACGATCACATTCTGTTCCAAAAGTTGAAAACGTTCTGAAAAAAACTAACACCATAAGCAATAACACAACAAACGCAATACATAAATCAAATAAAGTTAGTGTTGTCTCTACGAAACATGTAAAGGTCACTACACAAACAGTTAAAAGTACATTAAGATCCCAGATTAAGCCGAAGATGTGTTTGAGAAGTTTTCGGGGGCGTTTTATACAAAAAGAGCTAAAATTTAGAAATAACATTAAAAAGAAAACACTTCCTATGAAGAGAATTGAGAAAAATAATGAACAAAACAGTAGCGAAAGTGAAGATGAAtcaagctctcaatattcttcaactgatggtgatggtgataatgatgatgatgaggacgatgatgatgatgatgatgatgatgaaccattagataaaacagcaaaaGCAACTAAATTAAATCCTAAAGTTGTTTTAGCTAAAGTTAAAGTTGCTAAGAAATCCGCACCAGGACCgaaaaaaccatcagaaatcaaTTTCAGAATAACACGTTCTAATCAATTTTTGAGTAATAAAATCAAATCACGAAGACAACAAATGAAACAATTAATTTTAACAACACCAACAAACATTGTTAAACCGCGTACATTACGTTCGCATACATTGAGAAAAGGTGAAACTTTCATATCGTCAACTAAACAGAAATTAATGCAATTACGAAAGCAAGATTTAAGACGTACACGAATCGAAAGAACAACGACAAAAAAAGAAACAAGCGAATTAGAAAGAAAGAATGTTAAAACGTTAGTAGATGTTAAAAAGGATATTAAAGAAATTACTGAGAATGTTAAAAAAGAGCCAATAAAGTCGATCGAGGGTACGAAAAAAGTCATTAGTAAAACTCGTGAAAATCCCAAAAAACAAATCACATCACCACCAACACCATTTACGCTATCAACATCAACATCATCAACAACAAGTAAAAATAAATCAACGAAAAGTACGACAATTCCAAAGAATGATTTAAAAATTATTGAAACATTGAAAAAGAAAGAACAGGAACGTATTAAATTAGATGCTAGAAAAGTACCACATGTTACAGCAGAAACTGAACTTGAATTACAAACAGATAAAACTAGAAAATCACCAACTGCTATTAAAAAAGAATCAACAAAAACTGAAACAAATAATAAGAAAGATAATGAAAATAAACAAAATTTAAAAAGTCCAGAAAATGAAATAAGAACATCACAACGGCCAAGTAGAAAAACTAAAGAAGCTGCAGCTATTTATATGGAAATATTAAGTCATAAATTAGTCAATGATAGTAAAATGGATGATGATAATATATCGATTGATAGTTTTCCGGAATTACCAAACGTTAAGAAAACAGAACAAAGGGAGAATGAATTGAAAGCAAAAGCAAAATCAAATAATGAATGCAATAATAATGATAAGAAATCTGTTGAAATGAAAAATCTTAGGTCCTCAGATAAGAAAAAGGTGGCTTCACAAAAGAAAAATCAATTAGATGATGGTAAAAATGAAAAATCAAAAAATGATAAAACCGAACAGAAATTTTTTGATGACAAATCAAAAGATGATGTGAAACTGTGTGATCGTAAGACACGTTCTAGTGGCCCTTTAGAGAAAATTGTAGAAAAAAGTAATGATGCTGATATAAAAATTGAAATAAATTCAATTGAATTGGAAACGAAAAAATCCATAAATAAGAATGAAAATAAAAGAAAATGCGACCCAAATGTTGATACTACAGTTAAAACAAATAAACAACAAAAAGCTGATTGTAAAGAAGCTGAAGATTTACCAAAAACAAAACGTAAAGATAATGAAGAAACTCCCAAACGACAAACACGAAATTCTACCCAAAATATTCAAGAAAGTAGTGATGATTCAGATGAATCATTTCGAGCTGATATACGAATCCCAAGAAAACGTTTAGTAACTAGAAGTAAACTACCTAAATCATACCACACtgatagtgatgatgatcttgatgaagaagatgatactgatgatgatTCATTTAGTTCATCAAAATCTGAAATTAAAAAAGTATTAAGATTAAAAACAAAAACTTATAAAGAGCTTAGTTCTAGTGAATCAGATCAATCAACAACATCTGATATCAATATAAAACCGCCAATATCAATAACAACAACAACAACAACAGCAATAAAAAATAAACGTTATACAAAAACACGAAGTCAACGTAAAAGTGAACCAAGTTTTAGTGATTCTGATGAGGAACCATTATCGAAATTAACACAAAATAAAAATAGTGAAACGAATGATTCGAAGAAACTACAAAAAAGTGATGATGAAATAAAAAAAGAAACAATACGTGAAATTAAACCGAAACGTGAATGTGCAAAACGTCCACAAAATTATTTACCAATGTTCTCATCATCCGAAGAAGATGATTTCTTTCTCGGTTACAATACAATACAACAAGAAAAACCAATAAAAACCAAATGTCAAGAGAGTAACAATTGTCCACATGCACCAACAACATCTGATATTGGTCGGCGTTTTGGTAAAGGTAAAGTGAATATGTCAAATGAACAAATTGAGAAATGGTTAAAAGATTCAGTAATGGCTGGTAGTTTAAAAAATGATAATGATGAAATGTTGAAATTTACGGAAACAATACCAACAGAAACATCAATGAATATCGCTGATATTATTGATATAGAAAAATTAAAATCATCATTACTATTAACATCTGATTTAGATGATAAAGTTGATTTAGATTGTAGTAAAAAAGAAACGGTTGGAAGTATTATCGAAAAATTGGAAAATAAAATTAATGTTTCCAAGCCGAATTTAGATCGAAAATTGATTTTCCGTAAAGACAAAGCTTCTTCAATTCGTAATATTAATGCATTCTCTGCTGATAATGAAAGTAGTGTTTATGCATTTGAAGCAAATGAAAATTTAATGAAAGCACCATTTAGACGACCATCACGACGACCATCTAGCACTGCTACGTCAAGATCGGAAGATGAATCATCTAAAATTGATGATTCTAATAAAAGTGGTCAATTTAGGAAACCATCATCAATTAAACAAGATTCGAATAAAATTAAAATCGAGATAGTCGATGAAGATTCAGGCAATTTCGAACAAAATATTCAAACAGAAAGTGATAATTCTAATCAATTGAAACCATCACCATCTTTAGTAATAATAAAAGGCAATACAAGAACAGAAATGGTACCACCGCAGGCTGTTTTACAAAAAACCAAAGTAGATGGAAAAAATTCGAAAGGTCCAATCAAAAATACAATTGATGATGATTTTAAATATAAAATACCAAGTTCACCTAGTGCTAGTTCATCATCAAGTGCTAAATTATATAAAAAACAAGGAATAAAATCAAAGCCACGTATAACAAATGATATACAACCGATAATTGTAAATGAATTTCCAACAAATAATAATGCAGCACAATTAGTTGTCGCACCAACATATTATCCAAACGAAAAAGAATTTCAAGATCCAATTGAATTTATTGAGAAAATCCGTCCAAAAGCTGAACAATTTGGTATATGTCGAATTGTACCACCAAGTACATTTAAACCTGAATGTAAAGTTACTGATGATATGAGATTTACAGCATATAATCAATATGTACATAAAATGTTACATCGTTGGGGGCCGAATTTCAAAGAATTAATGGCTATTAAAAAGTATTTATCAACACAAAATATCAGTTTAACACATCCACCATGGATTGGTGGTATGGAAATTGATTTGCCACGATTATATCAAACTGTACAATCTTTAGGTGGTTTAAAAGAAGTGATTGAAAAGAAGAAATGGCCGAAAGTGTCTGATGCAATGAAAATACCAAAATTGGCACAAGATCGTGTGACAAAACTTGACGATATTTACTGTAAATATCTCTTACCTTACGATACTTTATCACCAGCTGAAAGAGAGAAATTATTTGATGAAGTTGAAACGGAATGGGCGAAACGTGAATCGAAATCTCTacaaaaattacaacaaaatagcgaagttgctgatgatgttgataataataatgatgagaatgatgatgatgatgatgatgaaacagatacagaatcagataatgaagcAGAAGAATGTATTGTTAAAGGTCGTGGTATGGCTTTAAATGCATTTTATCGAATTGCCCGGAATACAATGAGTATGTGGTTCCGAATATCTGAACCACCAGTTGATGAGGTTGAACAAGAATTTTGGAAGAATGTTACATTAAAACAAAATCATATTTGTGTACATTCAGGATCTATAGATTCAGGTAATTGGGGATATGGCTTTGCTGTATCTAAAAATAGTCCATTCGCTCGACACGCATGGAATCTCAAAGTTTTAACAAATAATAGTGGATCAGTCTTAAGATCTTTAGGACCTATTATGGGAGTGACTGTACCAACATTACATGTCGGTATGGTGTTTAGTTCTTGTTGTTGGTATAGAGATCCGCATAGTTTACCATGGATTGAATATTTACATACTGGTGGTAGTAAAATTTGGTATGGTATACCAGATATAGCTAGTGAATCATTTCATAATGTTTTAAAGAAATTAGTACCAAATTATTGTCAAAATAAAACATTATGGTTACCATCTGATACAGTAATGGTACCACCAAATTTACTTGTTGATAATGGCGTATCATTATGTCGTATTGTACAAGAACCTGGACAATTTATTGTTGTATTTCCAAAAGTTTTCACATCAAGTATTAGTACTGGTTATGTTGTATCAGAAAGTGTTTATTTTGCACCACCATATTGGTTAAATAATGCACGTAATGTTTTCGATAATTTACGTAATAGTTGTGAACCATCAATGTTTTCATTAGATCGTTTATTATTAAGTATTGTAAATGATTCTAGAACAAATATTGATGTATTAAAGCAAATTTTACATGTTATTATCACAATTTGTGATAATGAGAAAACGAAACGCAATCAAATACGTACTCTTGGTGTGAATGTAAATGAAAAATTACCATTACCAGATGCGCCGAATGTTAGAAAAAAAGAAATCACAAGATGA
Protein Sequence
MLINRSEMKRKRRDCPSPLLDDNPKRTKVHAQRKFAQGSNVNSPVLTPVKEIEKQEVDVMPEPVELLPIKRPNTEDFLTFLCFRGTPILPPNLNFFNTASIVDTNGQVHEIKSESPKNGPIDTSAIAKASGSNERPFIAFGVRKRADPIVISKQMDKKRRHALALQALRRKYQEQRMAKIRAVTISKLSETKSSKTLLRSHSVPKVENVLKKTNTISNNTTNAIHKSNKVSVVSTKHVKVTTQTVKSTLRSQIKPKMCLRSFRGRFIQKELKFRNNIKKKTLPMKRIEKNNEQNSSESEDESSSQYSSTDGDGDNDDDEDDDDDDDDDEPLDKTAKATKLNPKVVLAKVKVAKKSAPGPKKPSEINFRITRSNQFLSNKIKSRRQQMKQLILTTPTNIVKPRTLRSHTLRKGETFISSTKQKLMQLRKQDLRRTRIERTTTKKETSELERKNVKTLVDVKKDIKEITENVKKEPIKSIEGTKKVISKTRENPKKQITSPPTPFTLSTSTSSTTSKNKSTKSTTIPKNDLKIIETLKKKEQERIKLDARKVPHVTAETELELQTDKTRKSPTAIKKESTKTETNNKKDNENKQNLKSPENEIRTSQRPSRKTKEAAAIYMEILSHKLVNDSKMDDDNISIDSFPELPNVKKTEQRENELKAKAKSNNECNNNDKKSVEMKNLRSSDKKKVASQKKNQLDDGKNEKSKNDKTEQKFFDDKSKDDVKLCDRKTRSSGPLEKIVEKSNDADIKIEINSIELETKKSINKNENKRKCDPNVDTTVKTNKQQKADCKEAEDLPKTKRKDNEETPKRQTRNSTQNIQESSDDSDESFRADIRIPRKRLVTRSKLPKSYHTDSDDDLDEEDDTDDDSFSSSKSEIKKVLRLKTKTYKELSSSESDQSTTSDINIKPPISITTTTTTAIKNKRYTKTRSQRKSEPSFSDSDEEPLSKLTQNKNSETNDSKKLQKSDDEIKKETIREIKPKRECAKRPQNYLPMFSSSEEDDFFLGYNTIQQEKPIKTKCQESNNCPHAPTTSDIGRRFGKGKVNMSNEQIEKWLKDSVMAGSLKNDNDEMLKFTETIPTETSMNIADIIDIEKLKSSLLLTSDLDDKVDLDCSKKETVGSIIEKLENKINVSKPNLDRKLIFRKDKASSIRNINAFSADNESSVYAFEANENLMKAPFRRPSRRPSSTATSRSEDESSKIDDSNKSGQFRKPSSIKQDSNKIKIEIVDEDSGNFEQNIQTESDNSNQLKPSPSLVIIKGNTRTEMVPPQAVLQKTKVDGKNSKGPIKNTIDDDFKYKIPSSPSASSSSSAKLYKKQGIKSKPRITNDIQPIIVNEFPTNNNAAQLVVAPTYYPNEKEFQDPIEFIEKIRPKAEQFGICRIVPPSTFKPECKVTDDMRFTAYNQYVHKMLHRWGPNFKELMAIKKYLSTQNISLTHPPWIGGMEIDLPRLYQTVQSLGGLKEVIEKKKWPKVSDAMKIPKLAQDRVTKLDDIYCKYLLPYDTLSPAEREKLFDEVETEWAKRESKSLQKLQQNSEVADDVDNNNDENDDDDDDETDTESDNEAEECIVKGRGMALNAFYRIARNTMSMWFRISEPPVDEVEQEFWKNVTLKQNHICVHSGSIDSGNWGYGFAVSKNSPFARHAWNLKVLTNNSGSVLRSLGPIMGVTVPTLHVGMVFSSCCWYRDPHSLPWIEYLHTGGSKIWYGIPDIASESFHNVLKKLVPNYCQNKTLWLPSDTVMVPPNLLVDNGVSLCRIVQEPGQFIVVFPKVFTSSISTGYVVSESVYFAPPYWLNNARNVFDNLRNSCEPSMFSLDRLLLSIVNDSRTNIDVLKQILHVIITICDNEKTKRNQIRTLGVNVNEKLPLPDAPNVRKKEITR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

90% Identity
-
80% Identity
-