Math004908.1
Basic Information
- Insect
- Mellicta athalia
- Gene Symbol
- -
- Assembly
- GCA_905220545.1
- Location
- HG992177.1:24827048-24839697[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.21 25 6.9 3.5 1 23 304 326 304 326 0.97 2 16 3.5 4.3e+02 3.0 2.2 1 23 333 355 333 355 0.85 3 16 3.5 4.3e+02 3.0 2.2 1 23 402 424 402 424 0.85 4 16 3.5 4.3e+02 3.0 2.2 1 23 556 578 556 578 0.85 5 16 3.5 4.3e+02 3.0 2.2 1 23 710 732 710 732 0.85 6 16 3.5 4.3e+02 3.0 2.2 1 23 864 886 864 886 0.85 7 16 3.5 4.3e+02 3.0 2.2 1 23 1018 1040 1018 1040 0.85 8 16 3.5 4.3e+02 3.0 2.2 1 23 1172 1194 1172 1194 0.85 9 16 3.5 4.3e+02 3.0 2.2 1 23 1326 1348 1326 1348 0.85 10 16 3.5 4.3e+02 3.0 2.2 1 23 1480 1502 1480 1502 0.85 11 16 3.5 4.3e+02 3.0 2.2 1 23 1634 1656 1634 1656 0.85 12 16 0.00023 0.028 16.2 0.2 2 23 1663 1684 1662 1684 0.96 13 16 0.00012 0.014 17.1 3.5 1 23 1690 1712 1690 1712 0.98 14 16 0.00076 0.094 14.6 2.1 1 23 1718 1740 1718 1740 0.96 15 16 2e-05 0.0025 19.5 0.3 1 23 1746 1768 1746 1768 0.96 16 16 0.00084 0.1 14.4 0.1 1 22 1785 1806 1785 1808 0.90
Sequence Information
- Coding Sequence
- ATGACCGAGGCCTGTGCGGTGAATCGCAACAGAGatgaaaataaaagtttatcgAAGGATAATGAAGATTTAAGCGTTAAGGAGGAGCAAGAAGTAACTGTGAAGCAGGAACTTGTGGAGTGCTTAGTGTGTTCGAACCGGACGACTGAGCACAGCGACCTCAGTACCGCGAGCACCGCTGCAGGCACGACGCTCTGTGATTATTTGTGTAAATTCACGCCAGCCGATATAACGAAAACAATCTTCTCTTCTAAGTTCATTTGTAAAACGTGCCTCAACCTAGTTAATATATTAGAGCGTGCAGAATTAGAATATTTGAAGTTAAAAGAGGAATTTCAGTCTATACTCAGCAAGAACCCGCTGTTTGAAACGCAAACCTTACAAGTTACTGTCTCCCTCGATCCTGTCAAAAATGAGAGCGTAGAGACGTTTGCAGATAAAAATTTAGATGAAGACTCTGAAGATGAACCTCTCGCACTTACCAAAAAGAAGAGGCACAGAAGACTTGATAAGAGAAAAAAGAAAACTTTGTCGGATAGCAAGCGTAAAGTCCGCTCCAAAAACTGTGATGACAGCTGGAAATGCACAGAGTGTGAGGTGAGTGGAAAGACGGGGGGTACGGAGGCACTGACCACACACATGCTGCTCGCTCACACGCTGCCCGGCTCCATACAGATCGACAAAGTCAAGAAAGAAGAGTCGCCTGACAGGTCACAAAGTCCAGACTTCAATGTTCTGGATGATATGTTCAAAGTGGAATCTGAAGTGTTTGATGATGACGATGAAAGTTCGAACTATGTCCCCGATGAGCTGAGCAATGGCAAGCATAGTAAAAGAAACAAACTGCTCGGTCGGGCGAAGAGAAAAGACGGCGGCACAGGTGTTAAGAAAAAGGTTCAGAAAACCATACACTATTGTGATCAGTGCAACGCCAAATATACATCACTGGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGAACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGAACTGCAAGCCGCCTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGGACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGGACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGGACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGAACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGAACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGGACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGGACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGGACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGGACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGGACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGGACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGGACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGGACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGGACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGGACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGGACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGGACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGGACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGGACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGGACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGGACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGGACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGGACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGGACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTACGTGTCTTATGTTTATGTCTACAGTCTACAGTGCGCCTGCAGCAGCACAAGCAGAAGCACGAGGACTGCAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACGTCGCCATGCACAAGGGTATAAGTGACTGGAAATGCGAGGAGTGTAACAAACTGTTTCCGTCGAAGGGTGCGTTGCAGAGGCACAACAATATTCATACTGGAAAACTTAATTATCAGTGCGACCTGTGCGGCAAGTCGTTCATCCACACGTCGTCGTTCAAGATGCACAAGCTGTCGCACTCGGGCGTGAAGCCGCACGCGTGCGACGTGTGCGGGCTGGCGCTCATGACGCGCTCGCACCTCAAGCGCCACAAGCGCGTGCACTCGGGCGAGAAGCGCCACGAGTGCGCCGTCTGCGGCAAGCGCTTCTCCGAGCGCTACAACCTCATCGCGCACGCGCGCGCGCACGGCACTACTGAGGGCGGGGCGGGCGAGCTGGCGCCCCGCCGGCGGCTGTTCCGCTGCGGCTTCTGTCCGGAGCGCTTCGAGCGGCGCGCGCAGCTGGAGCGCCACGCCGCCGCCGCGCACGGCCGCGCGCTCGAGCGGCCGCCGCCCACGCCGCGCAATACCATGAGCAAGCTGCTCAAGGCGCAGGCGCAGCGCCCACACGTGCGAGACAAGGGTGAGTTGAACTTGTGCCCGGAGCGCTGGAGCGGCCGCCGCCCACGCCGCGCAACACCATGA
- Protein Sequence
- MTEACAVNRNRDENKSLSKDNEDLSVKEEQEVTVKQELVECLVCSNRTTEHSDLSTASTAAGTTLCDYLCKFTPADITKTIFSSKFICKTCLNLVNILERAELEYLKLKEEFQSILSKNPLFETQTLQVTVSLDPVKNESVETFADKNLDEDSEDEPLALTKKKRHRRLDKRKKKTLSDSKRKVRSKNCDDSWKCTECEVSGKTGGTEALTTHMLLAHTLPGSIQIDKVKKEESPDRSQSPDFNVLDDMFKVESEVFDDDDESSNYVPDELSNGKHSKRNKLLGRAKRKDGGTGVKKKVQKTIHYCDQCNAKYTSLVRLQQHKQKHENCKPPYICEVCGAHYKHKRACDIHVAMHKGTCLMFMSTVYSAPAAAQAEARELQAASTVRLQQHKQKHEDCKPPYICEVCGAHYKHKRACDIHVAMHKGTCLMFMSTVYSAPAAAQAEARGLQAAVHLRGVRRALQAQARLRHTRRHAQGYVSYVYVYSLQCACSSTSRSTRTASRRTSARCAARTTSTSAPATYTSPCTRVRVLCLCLQSTVRLQQHKQKHENCKPPYICEVCGAHYKHKRACDIHVAMHKGTCLMFMSTVYSAPAAAQAEARELQAAVHLRGVRRALQAQARLRHTRRHAQGYVSYVYVYSLQCACSSTSRSTRTASRRTSARCAARTTSTSAPATYTSPCTRVRVLCLCLQSTVRLQQHKQKHEDCKPPYICEVCGAHYKHKRACDIHVAMHKGTCLMFMSTVYSAPAAAQAEARGLQAAVHLRGVRRALQAQARLRHTRRHAQGYVSYVYVYSLQCACSSTSRSTRTASRRTSARCAARTTSTSAPATYTSPCTRVRVLCLCLQSTVRLQQHKQKHEDCKPPYICEVCGAHYKHKRACDIHVAMHKGTCLMFMSTVYSAPAAAQAEARGLQAAVHLRGVRRALQAQARLRHTRRHAQGYVSYVYVYSLQCACSSTSRSTRTASRRTSARCAARTTSTSAPATYTSPCTRVRVLCLCLQSTVRLQQHKQKHEDCKPPYICEVCGAHYKHKRACDIHVAMHKGTCLMFMSTVYSAPAAAQAEARGLQAAVHLRGVRRALQAQARLRHTRRHAQGYVSYVYVYSLQCACSSTSRSTRTASRRTSARCAARTTSTSAPATYTSPCTRVRVLCLCLQSTVRLQQHKQKHEDCKPPYICEVCGAHYKHKRACDIHVAMHKGTCLMFMSTVYSAPAAAQAEARGLQAAVHLRGVRRALQAQARLRHTRRHAQGYVSYVYVYSLQCACSSTSRSTRTASRRTSARCAARTTSTSAPATYTSPCTRVRVLCLCLQSTVRLQQHKQKHEDCKPPYICEVCGAHYKHKRACDIHVAMHKGTCLMFMSTVYSAPAAAQAEARGLQAAVHLRGVRRALQAQARLRHTRRHAQGYVSYVYVYSLQCACSSTSRSTRTASRRTSARCAARTTSTSAPATYTSPCTRVRVLCLCLQSTVRLQQHKQKHEDCKPPYICEVCGAHYKHKRACDIHVAMHKGTCLMFMSTVYSAPAAAQAEARGLQAAVHLRGVRRALQAQARLRHTRRHAQGYVSYVYVYSLQCACSSTSRSTRTASRRTSARCAARTTSTSAPATYTSPCTRVRVLCLCLQSTVRLQQHKQKHEDCKPPYICEVCGAHYKHKRACDIHVAMHKGISDWKCEECNKLFPSKGALQRHNNIHTGKLNYQCDLCGKSFIHTSSFKMHKLSHSGVKPHACDVCGLALMTRSHLKRHKRVHSGEKRHECAVCGKRFSERYNLIAHARAHGTTEGGAGELAPRRRLFRCGFCPERFERRAQLERHAAAAHGRALERPPPTPRNTMSKLLKAQAQRPHVRDKGELNLCPERWSGRRPRRATP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -