Math028541.1
Basic Information
- Insect
- Mellicta athalia
- Gene Symbol
- -
- Assembly
- GCA_905220545.1
- Location
- HG992195.1:691073-694881[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.019 2.3 10.2 4.1 1 23 221 243 221 243 0.97 2 11 5.3 6.5e+02 2.5 0.0 3 23 284 305 282 305 0.88 3 11 2.6e-06 0.00032 22.3 0.3 2 23 328 349 328 349 0.97 4 11 7.1e-06 0.00088 20.9 4.7 1 23 357 380 357 380 0.97 5 11 0.02 2.5 10.1 0.1 1 23 386 408 386 408 0.94 6 11 0.063 7.8 8.5 3.6 1 23 414 436 414 436 0.95 7 11 0.008 0.98 11.3 8.7 1 23 442 464 442 464 0.97 8 11 0.0002 0.025 16.4 2.8 2 23 475 497 474 497 0.95 9 11 2.5e-06 0.0003 22.4 0.2 1 23 503 525 503 525 0.98 10 11 4.2e-06 0.00052 21.6 2.4 1 23 531 553 531 553 0.98 11 11 0.0042 0.52 12.2 1.5 1 23 559 581 559 581 0.92
Sequence Information
- Coding Sequence
- ATGAATTTCAACGCTTCAAGGAATGATGGTCGAGGCAACTCGAAGCTGTGTCGCGTTTGCggcaaaaaaaatatgaccCTAATACATTTATGTAGTGCAGAAGCATCACACAATAACTTGgtgcaaaaaataaacaaatacctACCCATTGTGGTGGATCTACATGACAAATTACCTCTGGGTGTTTGCCAGCCGTGTGTCACTGAAGTGTCGAATTGGCACAGTCTAGTGCAGTGCTGCATAGAGACAGACAAGTTGCTGGCTTTAAAGCTCAAACATACGTCACAGCTTCAAAACAGTAAAGAATCTAACTACAAACCAAACGGTGAAAATTCTACTAGAAATGATGCAAAGGCGAGGTTAacaactaataatttaatcttaATATTGAAAGAAGTTTTAAATGATTACTTCAAGATTCTGAATGTCAACGAAGACAATTCGGATTTAATGTATGTGTGTCAAATGTGCCCCGAGAACCCGGCAGCGACATCTATAGAATGTTTGAATAATCATTTGATATCATCTCATAATCGAGAGCTTTGTGACAAGTCAGCTATTGAGACATTTGTAAAAGAAAACATTACATTCGAAGAAGTCCTGAATAGTGATGAAGTATCAGACGCTGAGTCAGAGAAACAAGTTGCagatatacctaattattattgCCCGTATTGTGAGTGTGTGTTTTCATCACCAACTCGCCTCATATGTCATCTGAACAAACATGTAAAAGTGAGCATCGACGACGGGGTCTTGTGTTGCAATAGTCTATACTCAGACAAAAAATCTTTCGTTTTACATTTGCAAAAGAAACATGTAAATAAAACTACAGAGAGCGAGTTAATCTGCAAAACATGTGGGTCTGTCGAAGAAAACACTGAGGCATTGGAAATACACATTAACGAAACACATTCAGATGTCAAACACCAGAAAAAAAAGGTAGAGCCGAATCCGAATTGCCAGACGTCCATTCCCGCCGTGTGCCCCGAGTGCAACAAAACCTTTGCCAATAAATACACCATGCTGAAACATATGGAGATTCACACCAACGTAACAAACAGCAACTTTGTGTGTGATAAGTGTAATAAGACTTACAAGAGTCGAAGCAGCCTGAATCAACATCATAGGGTGTTCCACGAAGGTCGCCTACCGTTCCTATGCCCCATTTGTGGTGAGGGCTTCCCGAAACGCATGACCAGGGACAATCACGCGCGCATCCACACTGGCTTCAAACCGTTCACTTGCCAGTACTGCAAAAAGTCGTACCGAGCACAGAACACACTCGATTGCCACATACAAATACATCTAAACATACGGAAGTACGAGTGTCACCTGTGCCCGAAGAGGTTCAGGAAGAAGAGCCACCTCGACTGCCATTTAAAATCTCACTTTAGGATGCGCAGGGGCATGGGATCCAGTGTGTGCCACATCTGCGGAAAACAGCTCTGTACGCCAAAAGGTCTGCAGCGACACCTCAAGGAGACGCACGAGCGGCCACGAAGCTACATTTGCGCCGTGTGTACAAAGAACTTCGCCAATGCGCAGAACCTCAAGCAACACATCCGCATCCATACAGGCGAAAGGCCCTACATGTGTCCGCAGTGCGGAAAACGTTTCTCTCAGAGCCAATTGCTACACATGCACCTCACGACGCACGGAGCGCAGCTGCCGTACCTGTGTGCGGAGTGCGGGGCGCGCTTCCGCCTGCAGAGCGGGCTGACGCGCCACTGCCAGCGGCACTCGGCCGAGCGGCCGCCACTGCAAGCGTCTGCATGA
- Protein Sequence
- MNFNASRNDGRGNSKLCRVCGKKNMTLIHLCSAEASHNNLVQKINKYLPIVVDLHDKLPLGVCQPCVTEVSNWHSLVQCCIETDKLLALKLKHTSQLQNSKESNYKPNGENSTRNDAKARLTTNNLILILKEVLNDYFKILNVNEDNSDLMYVCQMCPENPAATSIECLNNHLISSHNRELCDKSAIETFVKENITFEEVLNSDEVSDAESEKQVADIPNYYCPYCECVFSSPTRLICHLNKHVKVSIDDGVLCCNSLYSDKKSFVLHLQKKHVNKTTESELICKTCGSVEENTEALEIHINETHSDVKHQKKKVEPNPNCQTSIPAVCPECNKTFANKYTMLKHMEIHTNVTNSNFVCDKCNKTYKSRSSLNQHHRVFHEGRLPFLCPICGEGFPKRMTRDNHARIHTGFKPFTCQYCKKSYRAQNTLDCHIQIHLNIRKYECHLCPKRFRKKSHLDCHLKSHFRMRRGMGSSVCHICGKQLCTPKGLQRHLKETHERPRSYICAVCTKNFANAQNLKQHIRIHTGERPYMCPQCGKRFSQSQLLHMHLTTHGAQLPYLCAECGARFRLQSGLTRHCQRHSAERPPLQASA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -