Math035819.1
Basic Information
- Insect
- Mellicta athalia
- Gene Symbol
- -
- Assembly
- GCA_905220545.1
- Location
- HG992200.1:10370378-10379489[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.15 18 7.3 0.1 1 23 277 300 277 300 0.93 2 10 0.036 4.4 9.3 0.1 2 23 324 346 323 346 0.94 3 10 0.23 29 6.7 0.2 2 23 369 391 368 391 0.93 4 10 3.5e-05 0.0044 18.7 1.0 1 23 395 417 395 417 0.96 5 10 0.036 4.4 9.3 0.4 1 23 422 445 422 445 0.82 6 10 0.15 18 7.4 0.1 2 23 453 475 452 475 0.85 7 10 0.00027 0.034 16.0 4.4 1 23 482 505 482 505 0.97 8 10 7.6e-05 0.0093 17.7 1.2 1 23 511 533 511 533 0.98 9 10 1.3e-07 1.5e-05 26.5 0.6 1 23 539 561 539 561 0.98 10 10 5.7e-05 0.007 18.1 2.6 1 23 567 590 567 590 0.97
Sequence Information
- Coding Sequence
- ATGTTTTTTCAAAATGACGGAGCACCATGCCACTATGCCAGGATTGTCAGAGACTATTTAAACAGGCGTTTTAGAAACAAGTGGATCAGGCGAGGCGGGACCATAGCGTGGCCTCCAAAATCGCCCAATCTGAACCCCATCGACTTTTTTGTATGGGGTTATTATAAAGAAATCGTGTATGCAAAAGAAGCAAAAAATTTTGACAATTTGTTAAGAAAAATTAATGAAGCAGAAAGAATTGTAAAAGATTACAATGGCATTGAGACGTGGGAACACCCATCAGAAACAGAGACTGAATACATTTGTGACACATGCATATCCCGGCTACGAAGGGCCTTCAACTTTAAAAAGGAAATATTATCTACAGAACAATTGCTTAGAGAAAAACAGAAAAAcgTAGTCAACGAGAATATTAAACACGAGGAGGAATCTGATACGGAGATCGAGACAGAGTATTTGAGTATAGAATATTTAGATGAAGAGGACACGGGGAAAGAAAGGCCAGgTATAAAAGTCGACACATCGAATACGAATCTAGAGAAAgaagaaatattattaaacagtAAAACAAAGAAGTACACAGAAGATGATCTAGAGAAGTGTATAGAAGCTGTGAGAAGTAAGACATTGACACAGAGCAAGGCCTCTATACTATATAATGTACCACGGAAGGCGATCAGTGCGGCGATTGCTAatcTACAACTATTAGAAGATCCGGTCAAGACGACGAAACGGGGACGACCTGAACTGCAGAAGCGACAAGAGAACGTAGACAATATCATGAAATATACCAACGCCACACCTTTCAAAGGATTCCTTCGTAATGGATACGCGTGCTTCTTTTGCTCCGTAGTATACGAAAATGCGATCGATCTTAAAGAACATACCATCTTGAAACATTGCGGCGAGAACAAACAAAGAGCTACCGTTATTTCGGACAAAAGCATCAAGTTAGACTTGACAGATCTCGTTTGCAGGATATGTGAAGAGAGACTAGATACCCTGGAAAACCTGCTGGATCACCTAAAACTGGATCACAATAAGAACATCCATACGGACGTTCAAAATAACCTGGTCCCCTTCAAATTCGATAGTGACACTCTTAAATGCGTGGTCTGTTCTCAAGAGTTTGTAAGTTTCAAAGTGCTCAACGATCACGTAAACCTGAACCATTATAAGAATTACACGTGTGATGAATGTGGGAGAGGTTTCATTAACAGGAGATCGTTACAATCCCACAGTTACAGACACGAAACCGGTATATTTACCTGTCAGTTCTGTCCTAAAGTATTCGCGACGAGGATAAGACGTTTGGACCACGAAAGAGCAATTCATTTGACGAATAACAAACGAAATAAGTGCGGTTACTGTGACGAAAAATTTGTGGACATAGCACAGAAGAAGGAGCACGAAGTGGTCGTCCACGGCGCTGCTAGATTAGTATTTAAATGCAAAGCGTGCAACAAAACTTACAATACTCAGAGATCTCTACGGAGCCATAAGCGAAATTACCATCTAATGCTTCGTCCGTTCAAATGTTCCCAATGCGGTATGGAGTTTTATAAGAATATACAACTGAAGGATCATATGGTGAAGCATACCGGTGAGAGGGATTTTGTATGTAGTGTATGTAATAAGGCCTTTGGGAGGAAATCGACCTTGCGCGAGCATATGCGAATACATGCGAATGATAGGAAGTTCAAGTGCGAGTATTGTGGGCAGACGTTTGTGCAGAGGTGTAGCTGGAGGGGGCACATGCGAGCGAAGCATGGGGAGGAAGTCTAG
- Protein Sequence
- MFFQNDGAPCHYARIVRDYLNRRFRNKWIRRGGTIAWPPKSPNLNPIDFFVWGYYKEIVYAKEAKNFDNLLRKINEAERIVKDYNGIETWEHPSETETEYICDTCISRLRRAFNFKKEILSTEQLLREKQKNVVNENIKHEEESDTEIETEYLSIEYLDEEDTGKERPGIKVDTSNTNLEKEEILLNSKTKKYTEDDLEKCIEAVRSKTLTQSKASILYNVPRKAISAAIANLQLLEDPVKTTKRGRPELQKRQENVDNIMKYTNATPFKGFLRNGYACFFCSVVYENAIDLKEHTILKHCGENKQRATVISDKSIKLDLTDLVCRICEERLDTLENLLDHLKLDHNKNIHTDVQNNLVPFKFDSDTLKCVVCSQEFVSFKVLNDHVNLNHYKNYTCDECGRGFINRRSLQSHSYRHETGIFTCQFCPKVFATRIRRLDHERAIHLTNNKRNKCGYCDEKFVDIAQKKEHEVVVHGAARLVFKCKACNKTYNTQRSLRSHKRNYHLMLRPFKCSQCGMEFYKNIQLKDHMVKHTGERDFVCSVCNKAFGRKSTLREHMRIHANDRKFKCEYCGQTFVQRCSWRGHMRAKHGEEV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00985982;
- 90% Identity
- iTF_00985982;
- 80% Identity
- iTF_00985982;