Math016282.1
Basic Information
- Insect
- Mellicta athalia
- Gene Symbol
- -
- Assembly
- GCA_905220545.1
- Location
- HG992185.1:19200137-19208311[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.045 5.5 9.0 2.8 3 23 31 51 29 51 0.95 2 15 5.9e-05 0.0073 18.0 0.5 1 23 89 112 89 112 0.97 3 15 0.04 4.9 9.1 4.7 1 23 114 136 114 136 0.97 4 15 0.0044 0.54 12.2 0.3 1 23 171 193 171 193 0.98 5 15 0.027 3.4 9.7 0.2 2 19 222 239 221 241 0.92 6 15 0.047 5.8 8.9 1.6 1 23 251 273 251 273 0.88 7 15 3.6e-05 0.0045 18.7 1.5 1 20 279 298 279 300 0.94 8 15 0.0015 0.18 13.7 1.3 1 23 312 335 312 335 0.96 9 15 1.5e-05 0.0018 19.9 0.5 3 23 342 365 340 365 0.94 10 15 0.086 11 8.1 0.5 1 20 396 415 396 418 0.92 11 15 0.013 1.7 10.6 1.5 3 23 426 446 424 446 0.95 12 15 1.2e-05 0.0015 20.2 1.4 1 23 452 474 452 474 0.98 13 15 1.7e-06 0.00021 22.9 1.8 1 23 480 503 480 503 0.98 14 15 4.3 5.3e+02 2.7 0.1 7 23 589 605 589 605 0.93 15 15 0.00069 0.085 14.7 7.3 1 23 611 634 611 634 0.98
Sequence Information
- Coding Sequence
- ATGGCTTCACTCACCGATATGGACTTAGAGAGTTCAGCTTTGTACCGGAACCCTAAACCCACTACAATTGATTTAGTCGGTGGTATAAACTGCCACATATGTCATATAACATACGCTAACAAGAGAGACTATGACACGCATTATGTTAAACATCAGACCGGAAGCAAAGGCATAATATACACATGTGTGGTCTGTCACAAGGAAATAGCTGGCTATCCGAGTTTCCGTGGCCACTGCTACACCAAACATGTCATTAAAGAGAGATTCAAgtgTGAATACTGTTctaaattgttttcaaagtcTCCAGCGCTCAAGGAACATATCAATGTCATGCATAGATTTAAATGCTCGTCTTGCAAAAAAGAATTTACATCAAAGAAGGAGTGTCAGCTGCATCAAATTATTCACAACAACACTGACATGCCACCTTTTAAATGTCAAGCCTGCTACAATCAAATTGATTCACTCGAAAGTTGCAAAGATCACATAGATTTGCACTCAGCTTCTGTATATTTTTGCCCAATTTGTAACGAAAACATTTCGAGTCGAGAAAATGCTAAAGAGCATCTCCAAAAGCATTTCCGTGACGATGGAAACGAACAGTCACCATTGATGACTGCTTTCGATAAAGGTGAAAGCTACATAGAACAGTTAGGCGGTATTTCATGCACATATTGTCCTCTTACTTTCAAGGACAGGGTAGAGTTTGATGCACATTTTTCTTGCGAACATGGAAATGAAGATATAGTTTACACCTGTAATGTTTGCGGCAgacaatttgaaaaatattcagTATTTAGTGATCATTCCTATAACCATTTCATGAGGGATAGATTCTGCTGTGACATATGTCATAAGACATTCAGCCGTCTCTCGCTACTCGTGACACACATCTCAGCGTGTCAAGCAAACACAGAGTCCAATGGGAAACCATTCGAGTGTAACCAGTGCGGACACCGGTACGCCACTGAGGCGCGACTCCGTGAACACCTGCGAGACTTCCACAATATCTATTGTATCATTTGTCCAGAAAATGATTGCCACAAAAtattttccAGACCAAAAGATTTAATAAACCATCAACGTGAACGTCACTCTCAGCAAAATTGGTGCCGGCAATGTGGACTACTGTTCCTTACCTTACAGTCCTGTGAGCGACACTTAGACCTCCACAAGAAGAAACTCTATGTCTGTCCCGTCTGCAGTCGAAATTACAGCGAGAAACATCTTATCCTCAAACACGTGCCTCAGCACTTCGAGTCCGTTTTGCACCTCTGTAAAGTCTGCGGAAAGGTCTACAACGCCAAGAATCGTCTCATTGAACACAATAAAACGCATTCAGAAACGAAAAGTCATACTTGTACGTACTGCGGTAAAGGGTTTGTGAAAATTACTCAGCTACAACAACACATCAACATTCACACCGGTTCCAAGCCATACAAATGTCCGATATGTTCGAAATCGTTCGTTAGCTATCCGAACTGGCACAAACACATGCGTAGAATTCACGAAGTCGAtggtaaaaaattcaaaaaggaAACAGATAAAGCTTCAAACATTATTGATGATTCAGAATACGAAAGTGTCGATAATTTAGATGGGGAAGAGTCGCCTACGGAAAttgaattaaaagaaaacaatgcAAAGCAATTAACGACAGAAATTCCACTGGAACAAGTTGATACTTTCCCAAACACAGAACTACATGTTGGGACATCTGATGCTTACGTCTTACAGGAACTGGACACTAGCACGATGGACTCGGATAAGGGGTTTGTAAAATTTACTCAGCTACAGGAACACGTGAACATTCACAACGATTCCAAGTCATACAAATGTTCGATATGTTCGAAATCGTTCGCTAGCCATCAAAACTGCCGCAAACACATGCGCAGAATGCACGAAGTCGCCggtacaaaaatcaaaaatgaaacaatATATACAGAAGATAGTGTCGATAATTTAGATGGAGAAGAATCGCCTACAGAAATTGAATTTAAAGAAAACAATTCAAAACAATTAAAGACAGAATATCCGCTGGAACAAGTTGATACCTTCTCAAACACAGAACTACACGTTGGGATATCTGATGCTTACGTGTTACAGGAACCGGACGACAGCACGATGGAGTCGGATAGTATCGATCAGATCATTATAGAAAAGGAACTAGAAATATTTAAAGAcgcaaaaaatgaaaatatgaaaaatatatttgaatttatCAATATCCTACCAAATAATAATCCCACATTAGTTAGCGCGGAGAGCGCGGGCCCCCCGGCGGAGTACGGGCCGGAGTTCGTCACGCCGGAGCCGCTGCCGCACATCGACCCGCTGCTCACCATCAAGCCCGCGCAGCAGGCCTGGCCGGCGCCCTGGGAGACCTCCTGGGAGGCCCCCTGGGAGGCCCCCTGGGAGCCCCACATCACGCGCGTGTTCGACGAGGCCCCGGGCCGCCTGTCGCTCATGAACACCGACATATTCTGA
- Protein Sequence
- MASLTDMDLESSALYRNPKPTTIDLVGGINCHICHITYANKRDYDTHYVKHQTGSKGIIYTCVVCHKEIAGYPSFRGHCYTKHVIKERFKCEYCSKLFSKSPALKEHINVMHRFKCSSCKKEFTSKKECQLHQIIHNNTDMPPFKCQACYNQIDSLESCKDHIDLHSASVYFCPICNENISSRENAKEHLQKHFRDDGNEQSPLMTAFDKGESYIEQLGGISCTYCPLTFKDRVEFDAHFSCEHGNEDIVYTCNVCGRQFEKYSVFSDHSYNHFMRDRFCCDICHKTFSRLSLLVTHISACQANTESNGKPFECNQCGHRYATEARLREHLRDFHNIYCIICPENDCHKIFSRPKDLINHQRERHSQQNWCRQCGLLFLTLQSCERHLDLHKKKLYVCPVCSRNYSEKHLILKHVPQHFESVLHLCKVCGKVYNAKNRLIEHNKTHSETKSHTCTYCGKGFVKITQLQQHINIHTGSKPYKCPICSKSFVSYPNWHKHMRRIHEVDGKKFKKETDKASNIIDDSEYESVDNLDGEESPTEIELKENNAKQLTTEIPLEQVDTFPNTELHVGTSDAYVLQELDTSTMDSDKGFVKFTQLQEHVNIHNDSKSYKCSICSKSFASHQNCRKHMRRMHEVAGTKIKNETIYTEDSVDNLDGEESPTEIEFKENNSKQLKTEYPLEQVDTFSNTELHVGISDAYVLQEPDDSTMESDSIDQIIIEKELEIFKDAKNENMKNIFEFINILPNNNPTLVSAESAGPPAEYGPEFVTPEPLPHIDPLLTIKPAQQAWPAPWETSWEAPWEAPWEPHITRVFDEAPGRLSLMNTDIF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -