Math039196.1
Basic Information
- Insect
- Mellicta athalia
- Gene Symbol
- -
- Assembly
- GCA_905220545.1
- Location
- HG992203.1:11502646-11519604[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.6 5.7e+02 2.6 0.1 1 23 180 202 180 202 0.94 2 14 0.25 31 6.6 2.9 1 23 209 231 209 231 0.97 3 14 0.12 15 7.6 0.1 1 23 235 258 235 258 0.97 4 14 1e-05 0.0013 20.4 1.3 1 23 263 286 263 286 0.92 5 14 0.021 2.6 10.0 1.1 2 23 293 314 292 314 0.96 6 14 1.6e-06 0.0002 22.9 2.6 3 23 328 348 327 348 0.98 7 14 0.0047 0.58 12.1 4.7 2 23 355 376 355 377 0.94 8 14 0.00029 0.036 15.9 0.4 2 23 410 432 409 432 0.96 9 14 0.043 5.4 9.0 0.7 1 23 439 462 439 462 0.94 10 14 0.04 4.9 9.1 0.2 5 20 471 486 468 490 0.88 11 14 0.22 27 6.8 0.2 2 13 500 511 499 517 0.82 12 14 0.22 27 6.8 0.2 2 13 640 651 639 657 0.82 13 14 9.2e-06 0.0011 20.6 0.3 2 23 738 759 737 759 0.97 14 14 8.1e-06 0.001 20.8 1.3 1 23 764 787 764 787 0.96
Sequence Information
- Coding Sequence
- ATGGATAGTCAATTGCCTTTTaatgtacaaataaaacaagaacCGGAAGATAACTCATACGAAACAGGATATGATTTAAATCTAAAAAATGAACCAGAAGAAAATCTTCCAGAAAATTTTGTCGGTATTAAACAGGAAATGCCGGAGAATTTAAGTATTAAAGTGGAACCTATTGATCATGATGAAGGTGTTTTTGAGGAGGGTGAAACGGTTCCGGAAGAAATATTACCAGAAAAAATGGTTATGAAACTGGATCCCTCTTGTTATAGCGATGATCATTACAATAATACAGGTGCAAAGAAATTGTCTACTTCGAAAGTTAAACGAGACGACGATTCCGACGATGAATATTTACCTCCGAAAACCAAGAAAAAGAAAAAGGAACCGTTTGTCAAACCAACCTTTAGGGGTAAACCGAAAAGTACTGAAGAAACATACTCTGACGACATAACGAGACACATAGAAATAGTGACCATCGATGAAGAAGAACGACTCTTGGAACACCATGAACTTTTCAGTAGCCGAAAGCATATGAATTACACATGTGAACCGTGCGCGTTGGGTTTCGTCATCGAAGACGCCTACCATATGCATATGAAAATACATTCTCCGGAGAACGGGTCACACATGTGCGAGATTTGCACGGCGCGCCTGCGCACGGCGCACGTGCTGTACCGGCACCGCCTGCGCCACTACCGGCGCTACCGCTGCACGCTGTGCGCTCTGCGCCTGCGCGACAAGGACACGGTCGCCGCGCACGTCATGCGCGAGCACGTGGGCCAGGCCTTCGTGTGTCGCCAGTGTGGCCGCACCTTCAAACGGCCGCAGTACCTGAAGCGGCATGTAGACCAAATGCACACGCGTCCGCTACACCTGGAGTGCCCAGTTTGCAAGCGAGTGTTCTACGAGCGTGGTTGGTACCGCTGTCATGTCAGGACCCACAACGAGGAAGTCCGCAAGAACGTAGAAAGGAAGGCGATATGTTCGCACTGCGGACGTGAGTTCAAGAACAAGTCGTATCTCGTCAGGCACTTACAAACACACGAGGACCGCAAGCCAGCCGTCTGCAAGCACTGTTCTAGAACCTTTAAGAACATAGAAGTTCTGAAGGTGCATTACAGACAGCATCATTCGAAGAATCCGCTCAATGAAGACGGCAGCCTCAATGACAACTTCTCGGGTCGAACATACGCGGCACAGTCCATCTCTGGATCGGGTGCGAATACAACATGCGATCAGTGCGGACGCGTTCTGACGACGCGCGCGATGCTGGCGCGACACACGCAGCGCATGCACGGAGACCGCATGAGGAAGTTTCAATGCGATTACTGTAAGAAGTGGTACTTCACTAAGGCGGAAGTGCGGTCGCACATCGAGTGGTCGCACCTACAGCAGAGGAAGCACGCGTGCGGCTGCGGGCGAGTGTTCCGCACGCCGGCGCGACTGCGGCAGCACGCGGTCGCCGTACACCTGCACATCGAGCCGCCGCGGGACAAGACCTGCCCGCTGTGTGGGAAGATGTTCGCGGTACGTgccacacacaccacacacTGCGCACCACACACTGCGCACCACACACTACACTACGGCAGCACGCGGTCGCCGTACACCTGCACATCGAGCCGCCGCGGGACAAGACCTGCCCGCTGTGCGGGAAGATGTTCGCGGTACGTgccacacacaccacacacTGCGCACCACACACTGCGCACCACACACTACACTACGGCAGCACGCGGTCGCCGTACACCTGCACATCGAGCCGCCGCGGGACAAGACCTGCCCGCTGTGCGGGAAGATGTTCGCGGTACGTgccacacacaccacacacTGCGCACCACACACTGCGCACCACACACTACACTACGGCAGCACGCGGTCGCCGTACACCTGCACATCGAGCCGCCGCGGGACAAGACCTGCCCGCTGTGCGGGAAGATGTTCGCGGTACGTgccacacacaccacacacTGCGCACCACACACTGCGCACCACACACTGCGCACCACACACTACACTACGGCAGCACGCGGTCGCCGTACACCTGCACATCGAGCCGCCGCGGGACAAGACCTGCCCGCTGTGCGGGAAGATGTTCGCGGTACGTgccacacacaccacacacTGCGCACCACACACTGCGCACCACACACTACACTACGGCAGCACGCGGTCGCCGTACACCTGCACATCGAGCCGCCGCGGGACAAGACCTGCCCGCTGTGCGGGAAGATGTTCGCGAACCAGCAGGTCCTGACACGTCACATCAAAGGTCACTCCGGAGAAACGTATCCGTGCAACGAATGCGGGCAAACGTTCAAGACGCAGTCCTATGTTAAAGTGCACTACAAACTGAAGCACCTCAAAATGTCAAGGGCGGAGATCAAGGCTCAGTCGAAACGAAAACTTATCACCATAGAAAGACCTGCAGATGAAAGAGAGGCTAAAATTAAAGGAATACCAATCCCCAATTTAAATATTGATGATCCGCTCCTTATCAACGAACAGGACAGAGCGAGTGGTCTCAAAAATGATCATCAGAACATATCCGTACCTCTGTTTGAAACATTCGTTGATATACAACGTGAATGctga
- Protein Sequence
- MDSQLPFNVQIKQEPEDNSYETGYDLNLKNEPEENLPENFVGIKQEMPENLSIKVEPIDHDEGVFEEGETVPEEILPEKMVMKLDPSCYSDDHYNNTGAKKLSTSKVKRDDDSDDEYLPPKTKKKKKEPFVKPTFRGKPKSTEETYSDDITRHIEIVTIDEEERLLEHHELFSSRKHMNYTCEPCALGFVIEDAYHMHMKIHSPENGSHMCEICTARLRTAHVLYRHRLRHYRRYRCTLCALRLRDKDTVAAHVMREHVGQAFVCRQCGRTFKRPQYLKRHVDQMHTRPLHLECPVCKRVFYERGWYRCHVRTHNEEVRKNVERKAICSHCGREFKNKSYLVRHLQTHEDRKPAVCKHCSRTFKNIEVLKVHYRQHHSKNPLNEDGSLNDNFSGRTYAAQSISGSGANTTCDQCGRVLTTRAMLARHTQRMHGDRMRKFQCDYCKKWYFTKAEVRSHIEWSHLQQRKHACGCGRVFRTPARLRQHAVAVHLHIEPPRDKTCPLCGKMFAVRATHTTHCAPHTAHHTLHYGSTRSPYTCTSSRRGTRPARCAGRCSRYVPHTPHTAHHTLRTTHYTTAARGRRTPAHRAAAGQDLPAVREDVRGTCHTHHTLRTTHCAPHTTLRQHAVAVHLHIEPPRDKTCPLCGKMFAVRATHTTHCAPHTAHHTLRTTHYTTAARGRRTPAHRAAAGQDLPAVREDVRGTCHTHHTLRTTHCAPHTTLRQHAVAVHLHIEPPRDKTCPLCGKMFANQQVLTRHIKGHSGETYPCNECGQTFKTQSYVKVHYKLKHLKMSRAEIKAQSKRKLITIERPADEREAKIKGIPIPNLNIDDPLLINEQDRASGLKNDHQNISVPLFETFVDIQREC*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -