Math007884.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mellicta athalia
Gene Symbol
-
Assembly
GCA_905220545.1
Location
HG992179.1:20179719-20197400[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.053 6.5 8.8 0.1 2 23 260 281 260 281 0.95
2 25 0.062 7.6 8.6 0.2 5 23 289 309 286 309 0.89
3 25 0.39 48 6.0 5.0 1 23 409 432 409 432 0.94
4 25 0.016 1.9 10.4 0.0 1 23 438 460 438 460 0.96
5 25 0.034 4.2 9.4 0.1 1 23 469 492 469 492 0.92
6 25 1.6e-05 0.002 19.8 0.8 1 23 497 519 497 519 0.98
7 25 5.9e-05 0.0072 18.1 0.8 1 23 525 547 525 547 0.97
8 25 5.1e-05 0.0062 18.3 2.9 1 23 553 575 553 575 0.98
9 25 6.1e-07 7.5e-05 24.3 0.8 1 23 581 603 581 603 0.98
10 25 0.00092 0.11 14.3 3.2 1 23 609 631 609 631 0.98
11 25 0.00092 0.11 14.3 3.2 1 23 663 685 663 685 0.98
12 25 0.00092 0.11 14.3 3.2 1 23 717 739 717 739 0.98
13 25 0.00092 0.11 14.3 3.2 1 23 771 793 771 793 0.98
14 25 0.00092 0.11 14.3 3.2 1 23 825 847 825 847 0.98
15 25 0.00092 0.11 14.3 3.2 1 23 879 901 879 901 0.98
16 25 0.00092 0.11 14.3 3.2 1 23 933 955 933 955 0.98
17 25 0.00092 0.11 14.3 3.2 1 23 1135 1157 1135 1157 0.98
18 25 0.00092 0.11 14.3 3.2 1 23 1189 1211 1189 1211 0.98
19 25 0.00092 0.11 14.3 3.2 1 23 1318 1340 1318 1340 0.98
20 25 0.00092 0.11 14.3 3.2 1 23 1372 1394 1372 1394 0.98
21 25 0.00092 0.11 14.3 3.2 1 23 1473 1495 1473 1495 0.98
22 25 0.00092 0.11 14.3 3.2 1 23 1527 1549 1527 1549 0.98
23 25 0.00092 0.11 14.3 3.2 1 23 1837 1859 1837 1859 0.98
24 25 0.00092 0.11 14.3 3.2 1 23 1891 1913 1891 1913 0.98
25 25 0.00092 0.11 14.3 3.2 1 23 1945 1967 1945 1967 0.98

Sequence Information

Coding Sequence
ATGGAAGTGTTTCTTTACAATTCCACCGTTTGTAGACTATGTGGCGAAGAAAATGATAATGGAACTTTATTATATTCTAACGAAGAAAATAATCAAAACTTGTGTGAAATTATTAACACATATTTACCTTTAAAGGTATCAGATGACGGTGAGCTTCCTAGGACTATTTGTCCTGGCTGTACAATACAATTGGAAGCTACAGTAGAATTTTTGAATCTAATTATTAATGGACAAaaaataaTAAGAGAGTTGTATCAAagagaaaaagaatataaaaaaaatattttgaatacgTCTAGTCACACACCGGAGGCTTTATCAGAAAAAATTATCTATGAAATTAACACAAGCGATGGAGTATATCAAGTGGAACATCCTATATCACTACAAGTTGCAGGTCTTGATAAGCCTAAAAGGAAACGGGGTAGGCCTAAGAAAACTAAAACACCAGACAATATTGCACAACAATCGGTGGCCAAAGAACAACAATCAAAAGTCAGTAATAAACCTAATGAGAAGGATGAAGAGGAACCATCgggtaaaagaaaaagaaaagcaCCAACTAGGTTTAGTGAAGCTGTTCAGGGTAAGGAATTAGAACGAATATTCATAGCAGCAGGATTGATAGATGGAGAGGAAGAGAAAAAAGCCAATGCTGACGCTGCTCCTAAGGAACCAGAGGTAATCGGACATTTAGAAGACTCGGGAGAGCCGGTTGTTGTTATAAAGGGCAAGGGACGGGGAAGACCAAAGgGCCGCATGAGTCAAACACTGGAAGAGTGCGCGGTGTGCGGGCAGCAGTTCTCGTCGCGGGGCCGCTACATGTCGCACGTGGCGTCGCACGGCCGCGTGCACTACCGCTGCGACTGCGGCGCCACCTTCGTCACTCGCGCTGCTCTCACCGCACACCACGAGACTGCCGCGCACACGGGCGAGACTATTGAAGCCGCTGCTGATAAGTTCCAATCTAAAGATCCACTTGACATTAAAAAAGAGACAACAGCAGAAAACAACAATACACCTCCGACTGACAAAAAGGATGAAACAGATGGTTCTCAAGCGCTTCCCGACTTGAGTGATGCAAGCAAACCTATGCTAGATGCAGTGAATATCATTGAAGAAGTAGTAGATGTCACTAAAGATAATGATAACAGCAATAATGAGAAAAttgACAGTGCTAGCGAAGATGGTAATGATGAAGTAGAAACAAACAAAGGGAAAAAACACAAGTGCAATCGCTgtggtaaattattttgtaacagGCAAAGCAAGTCATTACACATTAAGGCGGTACACCTCGGCGAGAAGTCGTATGCTTGTACGGAATGCGAGGCACGTTTCGCTTACCCGCAGTCATTGGCCGTACACCGGGTCTCGCATCGCCGCTTCCGTCCTACTAATGGTTATGCGTGTGACCTTTGTGGAAAGGTGCTGAACCACCCGTCGTCCGTGGTGTACCACAAGCAGGCGGCGCACGCGGCGCAGCGCTACGTGTGCGGCGCGTGCGGGAAGCCCTTCCGCCACAAGCAGCTGCTGCAGCGGCACCAGCTCGTGCACTCGCAGGCGCGCCCCTTCACCTGCAGGACGTGCGATGCGTCGTTTAAGACCAAAGCGAACCTGCTTAATCACCAAATTTTACATTCCGGCATTAAAAAATTCTCGTGCGATATTTGTAAACAGAAATTTGCTCACAAAACCAGTCTCACGTTACACATGAGATGGCACACCGGCGTTAAGCCGTATTCGTGCAAGGTGTGCGGTAAGAGCTTCAGCCAGAAGGGTAACCTGTCGGAGCACTCTCGCATCCACACGGGCGAGAAGCCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGTGCGTGCGTACTGCACAGTACACAGTGCACAGTACACAGTACATTGTACGTCCACACGGCGAGAAGCCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGTGCGTGCGTACTGCACAGTACACAGTGCACAGTACACAGTACATTGTACGTCCACACGGCGAGAAGCCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGTGCGTGCGTACTGCACAGTACACAGTGCACAGTACACAGTACATTGTACGTCCACACGGCGAGAAGCCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGTGCGTGCGTACTGCACAGTACACAGTGCACAGTACACAGTACATTGTACGTCCACACGGCGAGAAGCCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGTGCGTGCGTACTGCACAGTACACAGTGCACAGTACACAGTACATTGTACGTCCACACGGCGAGAAACCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGTGCGTGCGTACTGCACAGTACACAGTGCACAGTACACAGTACATTGTACGTCCACACGGCGAGAAACCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGTGCGTGCGTACTGCACAGTACACAGTACATTGTACGTCCACACGGCGAGAAGCCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCAGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGTGCGTGCGTACTGCACAGTACACAGTACATTGTACGTCCACACGGCGAGAAGCCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGTGCGTGCGTACTGCACAGTACACAGTGCACAGTACACAGTACATTGTACGTCCACACGGCGAGAAACCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGTGCGTGCGTACTGCACAGTACACAGTACATTGTACGTCCACACGGCGAGAAGCCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGTGCGTGCGTACTGCACAGTACACAGTGCACAGTACACAGTACATTGTACGTCCACACGGCGAGAAACCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCAGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGTGCGTGCGTACTGCACAGTACACAGTGCACAGTACACAGTACATTGTACGTCCACACGGCGAGAAGCCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGTGCGTGCGTACTGCACAGTACACAGTACATTGTACGTCCACACGGCGAGAAGCCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGTGCGTGCGTACTGCACAGTACACAGTGCACAGTACACAGTACATTGTACGTCCACACGGCGAGAAGCCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGTGCGTGCGTACTGCACAGTACACAGTACATTGTACGTCCACACGGCGAGAAGCCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGTGCGTGCGTACTGCACAGTACACAGTACACAGTACATTGTACGTCCACACGGCGAGAAGCCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGTGCGTGCGTACTGCACAGTACACAGTGCACAGTACACAGTACATTGTACGTCCACACGGCGAGAAACCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGTGCGTGCGTACTGCACAGTACACAGTACATTGTACGTCCACACGGCGAGAAACCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGTGCGTGCGTACTGCACAGTACACAGTACATTGTACGTCCACACGGCGAGAAGCCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGTGCGTGCGTACTGCACAGTACACAGTGCACAGTACACAGTACATTGTACGTCCACACGGCGAGAAGCCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGAAAGGTGCGTGCGTACTGCACAGTACACAGTGCACAGTACACAGTACATTGTACGTCCACACGGCGAGAAACCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGTGCGTGCGTACTGCACAGTACACAGTGCACAGTACACAGTACATTGTACGTCCACACGGCGAGAAGCCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGTGCGTGCGTACTGCACAGTACACAGTACATTGTACGTCCACACGGCGAGAAACCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGTGCGTGCGTACTGCACAGTACACAGTGCACAGTACACAGTACATTGTACGTCCACACGGCGAGAAACCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGTGCGTGCGTACTGCACAGTACACAGTGCACAGTACACAGTACATTGTACGTCCACACGGCGAGAAACCCTACCAGTGCCCGCAGTGCCCGCGCCGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCGCCGGTCCGCGCACGACAGGACCGCGGCTATACCACGAGTGGACGCCATCGCCCGGCGCCGGCGGATGTTAGCCAGGCGGAACCTCCAGACTCAGACACAGATCAGTCTGCTCGTGGACGATAAGAACCAGCAGGCGCCGGTGCAGGTGCAACAGGTGCAGATGCAACAGGTGCAGTTGCCACAAGTGCAGGTGCCGCACCCGATCATGGAGAAGTTGGAGCTGGACGATGTGGACACGGAGGAGAGCGTCATATACGTGGCGTACGACGCGGACGACTCTGATGCGACTGCCTTCCACATACTGGACCCTGAACAGGAGGACATAGAAGAGGACAAAGTACTCAGCCCATGCGACATCTATTCGGGCACGTCCCTACTGGTGCCGCAGTTGCAGCCGCTGAAGATGGACGGTGGTGGGGAGGCGGAGGGGGAGGAGGAAGAGGAGGGGGAGGAGGTCCTGGAGACGGAGCAGCTGGTGCTGGAGAGGGAGAGCATTCCGGTAACGGACGAGCAAGGAAACCCTCTGCACTTTACAATGCAAGACGGCACAAAACTTGCCATCACGTCCATCGATGGGAAAACTTTGCAGGTCATTACACAAGATGGACAAACTATACCAGTTGAGATTAACGGCTTCAATGAGGAAGAGCAGGCGCTCAGCCCGGAGCCCGCTGTGCAGAGGGCGGGAAGCTACTACACCATCGTGTAG
Protein Sequence
MEVFLYNSTVCRLCGEENDNGTLLYSNEENNQNLCEIINTYLPLKVSDDGELPRTICPGCTIQLEATVEFLNLIINGQKIIRELYQREKEYKKNILNTSSHTPEALSEKIIYEINTSDGVYQVEHPISLQVAGLDKPKRKRGRPKKTKTPDNIAQQSVAKEQQSKVSNKPNEKDEEEPSGKRKRKAPTRFSEAVQGKELERIFIAAGLIDGEEEKKANADAAPKEPEVIGHLEDSGEPVVVIKGKGRGRPKGRMSQTLEECAVCGQQFSSRGRYMSHVASHGRVHYRCDCGATFVTRAALTAHHETAAHTGETIEAAADKFQSKDPLDIKKETTAENNNTPPTDKKDETDGSQALPDLSDASKPMLDAVNIIEEVVDVTKDNDNSNNEKIDSASEDGNDEVETNKGKKHKCNRCGKLFCNRQSKSLHIKAVHLGEKSYACTECEARFAYPQSLAVHRVSHRRFRPTNGYACDLCGKVLNHPSSVVYHKQAAHAAQRYVCGACGKPFRHKQLLQRHQLVHSQARPFTCRTCDASFKTKANLLNHQILHSGIKKFSCDICKQKFAHKTSLTLHMRWHTGVKPYSCKVCGKSFSQKGNLSEHSRIHTGEKPYQCPQCPRRFTTSSQHRLHARRHARRSAHDRCVRTAQYTVHSTQYIVRPHGEKPYQCPQCPRRFTTSSQHRLHARRHARRSAHDRCVRTAQYTVHSTQYIVRPHGEKPYQCPQCPRRFTTSSQHRLHARRHARRSAHDRCVRTAQYTVHSTQYIVRPHGEKPYQCPQCPRRFTTSSQHRLHARRHARRSAHDRCVRTAQYTVHSTQYIVRPHGEKPYQCPQCPRRFTTSSQHRLHARRHARRSAHDRCVRTAQYTVHSTQYIVRPHGEKPYQCPQCPRRFTTSSQHRLHARRHARRSAHDRCVRTAQYTVHSTQYIVRPHGEKPYQCPQCPRRFTTSSQHRLHARRHARRSAHDRCVRTAQYTVHCTSTRREALPVPAVPAPLHHLLAAPPARAPPRAPVRARQVRAYCTVHSTLYVHTARSPTSARSARAASPPPRSTACTRAATRAGPRTTGACVLHSTQCTVHSTLYVHTARNPTSARSARAASPPPRSTACTRAATRAGPRTTGACVLHSTQYIVRPHGEKPYQCPQCPRRFTTSSQHRLHARRHARRSAHDRCVRTAQYTVHSTQYIVRPHGEKPYQCPQCPRRFTTSSQHRLHARRHARRSAHDSARAASPPPRSTASTRAATRAGPRTTGACVLHSTQCTVHSTLYVHTARSPTSARSARAASPPPRSTACTRAATRAGPRTTGACVLHSTQYIVRPHGEKPYQCPQCPRRFTTSSQHRLHARRHARRSAHDRCVRTAQYTVHSTQYIVRPHGEKPYQCPQCPRRFTTSSQHRLHARRHARRSAHDRCVRTAQYTVHCTSTRREALPVPAVPAPLHHLLAAPPARAPPRAPVRARQVRAYCTVHSTQYIVRPHGEKPYQCPQCPRRFTTSSQHRLHARRHARRSAHDRCVRTAQYTVHSTQYIVRPHGEKPYQCPQCPRRFTTSSQHRLHARRHARRSAHDRCVRTAQYTVHCTSTRRETLPVPAVPAPLHHLLAAPPARAPPRAPVRARQVRAYCTVHSTLYVHTARSPTSARSARAASPPPRSTACTRAATRAGPRTTGACVLHSTQCTVHSTLYVHTARSPTSARSARAASPPPRSTACTRAATRAGPRTKGACVLHSTQCTVHSTLYVHTARNPTSARSARAASPPPRSTACTRAATRAGPRTTGACVLHSTQCTVHSTLYVHTARSPTSARSARAASPPPRSTACTRAATRAGPRTTGACVLHSTQYIVRPHGEKPYQCPQCPRRFTTSSQHRLHARRHARRSAHDRCVRTAQYTVHSTQYIVRPHGEKPYQCPQCPRRFTTSSQHRLHARRHARRSAHDRCVRTAQYTVHSTQYIVRPHGEKPYQCPQCPRRFTTSSQHRLHARRHARRSAHDRTAAIPRVDAIARRRRMLARRNLQTQTQISLLVDDKNQQAPVQVQQVQMQQVQLPQVQVPHPIMEKLELDDVDTEESVIYVAYDADDSDATAFHILDPEQEDIEEDKVLSPCDIYSGTSLLVPQLQPLKMDGGGEAEGEEEEEGEEVLETEQLVLERESIPVTDEQGNPLHFTMQDGTKLAITSIDGKTLQVITQDGQTIPVEINGFNEEEQALSPEPAVQRAGSYYTIV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-