Math023395.1
Basic Information
- Insect
- Mellicta athalia
- Gene Symbol
- -
- Assembly
- GCA_905220545.1
- Location
- HG992190.1:17774787-17793690[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.2e-11 3.9e-08 34.2 0.0 4 39 284 320 281 324 0.89 2 3 4.5e-12 1.9e-09 38.4 0.3 4 39 338 373 337 376 0.94 3 3 1.2e-07 5e-05 24.3 0.5 2 30 391 419 390 421 0.94
Sequence Information
- Coding Sequence
- ATGCGCCACGCAGCGACGCAGACTCGGGCGGGTGTGTGCCGAATTCACTTTCATTTGCGACATCTCATCGTCTCCCGAAGGTCACGGTGCAGCGGGCATCGTTCCGTGCGTCGCACGTGTGACGCGGCGGGTGATACGGCGGCCGCTGACCGACTAGGTGAGTCGATCGGTCTCGCGCTCGTCTTCCTCGACTCGTTTCCCTCACGTTTATCGTCTCCGCTCCACACCGTTCGTGCGGGAAGACTTTACAAAGTGCAAGAACTCGCGGTGTCGGTGACGCGCAGCCGTGTGTCCGCCGTGTCCTCGAGCGCCGCACCGAATAGCGATATGAGAAACGCGAGAGGGTTAACCGCGCAACTTTATATTCACTACTCGTCAGTCGTCACCTCCGTCAGGTGTCGGGTTTACGAATTAGTCAGGGATCTTACTCCGGTATTTCTGGGGTCTTTCGGAGACATGTCTTACCAGCAGTCATACAAAATCATGGTCCATACAAGCCACACTTTCCAGCAGTGCGTCCAAGGTTCGCTCGAGGagccgcccgcgcccgccgcgccgtcCGCCACACCCGTGTGTGAGCACGCGCCCGCGCCACACGAAGCGTCGCTCGCCACGCTTCAGCCCGCACAAGCGCACATAGCGGGATCATCACTTATCAGCCGGCACTTAGAAATGATGAACACGAATGAAGTAGCAGACTCCGCTGAGTTTGTTCCGCTCATGTCTATCAAGGACGAGCCTACGTCTGAAGGAGAACAGCCACATTTAAGCAGTGACGATACGAGCGATTCCAACGGTCCCCCGCATGAAACAGTCTGTCGGGGCAGTCCAAAGAGCTGGACTCAGAAGGACATGGACCAGGCCTTGGAGGCTCTCCGGAAACACCATATGAGTCTCACTAAGGCGTCGTCTCAGTTCGGAATACCGTCGACCACACTGTGGCAGCGAGCGCATCGTCTCGGCATCGATACGCCTAAGAAAGATGGGGGGGCGAAGTCCTGGGGGGCTTCGGATCTTGCCAGGGCTCTGGCCGCGCTACGCTCCGGTACATTATCTGCTAATAAGGCTAGCAAGGCCTATGGCATCCCCAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGCCTCGCCGCGCCCTTCAACGCCGCGCCCACCGCCTGGCGCCGCGCCGACCTGGCGCGCGCGCTCGCCGCCATCCGCTGCGGCGCCGCCTCCGTGCAGCGCGCCGCCGCGCAGTTCGGCATCCCCACCGGTGCGCCATTAATCGAATACCTTTCTCTTAAGGAATTGTATCAATGA
- Protein Sequence
- MRHAATQTRAGVCRIHFHLRHLIVSRRSRCSGHRSVRRTCDAAGDTAAADRLGESIGLALVFLDSFPSRLSSPLHTVRAGRLYKVQELAVSVTRSRVSAVSSSAAPNSDMRNARGLTAQLYIHYSSVVTSVRCRVYELVRDLTPVFLGSFGDMSYQQSYKIMVHTSHTFQQCVQGSLEEPPAPAAPSATPVCEHAPAPHEASLATLQPAQAHIAGSSLISRHLEMMNTNEVADSAEFVPLMSIKDEPTSEGEQPHLSSDDTSDSNGPPHETVCRGSPKSWTQKDMDQALEALRKHHMSLTKASSQFGIPSTTLWQRAHRLGIDTPKKDGGAKSWGASDLARALAALRSGTLSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALAAIRCGAASVQRAAAQFGIPTGAPLIEYLSLKELYQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -