Mcix017331.1
Basic Information
- Insect
- Melitaea cinxia
- Gene Symbol
- -
- Assembly
- GCA_905220565.1
- Location
- HG992234.1:6356908-6380706[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.3 8.9e+02 1.5 2.1 1 16 271 286 271 289 0.88 2 11 4.8 5.1e+02 2.2 0.3 3 21 378 396 377 397 0.92 3 11 2.8 3e+02 2.9 0.6 1 9 402 410 402 425 0.85 4 11 1 1.1e+02 4.4 0.5 1 23 730 752 730 752 0.84 5 11 2.4 2.6e+02 3.2 3.0 2 23 863 884 863 884 0.94 6 11 8.4e-05 0.009 17.2 0.5 2 23 900 921 899 921 0.96 7 11 7.3e-07 7.8e-05 23.7 3.6 1 23 927 949 927 949 0.98 8 11 1.7e-05 0.0019 19.3 0.7 2 23 955 976 954 976 0.96 9 11 0.00012 0.013 16.7 0.6 3 21 984 1002 982 1003 0.94 10 11 6.6 7.1e+02 1.8 0.3 1 20 1008 1027 1008 1031 0.92 11 11 0.0002 0.022 16.0 1.1 3 23 1040 1061 1039 1061 0.97
Sequence Information
- Coding Sequence
- ATGGAGGAGAAAACCAAAAAACGGTCTAGAAAGACCAAATTAGTACCGCGGGAATATTTAGATTCTGACGATGAAAACATAGCTAAAATGCAGAATGAGATCGAAGAAACGATAGCTCAAATGAATCCACTATCGATTTTGAGGAAATTAGAACCGAAACAATCTCAAAAAGACATGGAATTTTCCGTTAAAGTCGAAGTCGAAGAGGTTGATCAGAATGTGGCAGAAGAATTAAAAGACACAGAAGACTTACAAGATTCAGATTTGAATATAAAAATACATTCAGTGAAAAGTTTGTGCGAACCGACACAGGACGCTCCAGATGTGTCAGATGACGTTTATGATGCTTTCATTATTGATGAGGACGAAATACGAGAAGATATTGAGAGTCTCAGCCAGGAAACGACTAGCTTAGCTGACAAAACAATAGAAATTTATATAAAGAACATGTTCGGGAAGAGACAGTTATATATAGTTCAAAGTAGTTTAGATCAGCACTTGCAAAAAAAATTGAGAGGATGGCGTACTTGGTATAAAAGCAATCGTCAAATTAGAGACGCGCCGCTAATGTACATATGCTACGTGTGCATTAAGGGATGGTGGAACTTCTCTGAATTCCGCGAACACTTGAAACATTGTCGCAGATGGAAATGTCTCCATTTTGAGACGACAAACTATCAGGCAATCTTACAGGCGACCAGAGGGAGAAAGGTAACTACCTTTACATCTGAAAACAGTCAAAATCTACCGATATTCTATTCGAACTGTTGGAAATGTAACAAGGACCGATTGATTCACCTGAAATCACAGTACGTCTGTGGCGGTTGCAAAACAGAATTCCATACGTGCACAGCCCTAAGTTTCCACGAAGGCGAATGCGAGATGTACAGGGAAAAAATATTGCTTGATAATGGTATGAACCGTGAAAATAATTCAGCGACAAGTTACTGTTGTCCAATTTGTTCTTATAAAGATTGGGACACGGACCGTTTAATAATTCACGTAAAGAACGTACACAAAGTTAGATCGGACCTGCCCATTGAGTGGACGATAAGAGTATGTAAGAGGTGTAATCTACATTACCACGAAACTGCAGGCCATCATTGTCCACTACGTAAATGTATAGAACCGTGTGTATCTTGTACGGTTAACTTTCACAGTTTACGAGAGCTAACACTGCATCTGAATAACTTAGTGGATGATTATAAATGTAAGTTATGTAATAAAATCCTCCAGAAAAGTTGTATGGAACCGGAACATATGTTGGAGCATACTAATAATTATATTCAGTTGATCAAGTGTCCTTTTTGTCCGGAACCAATGTATTTCCTCCATGAAAAATTTGCCAAGCATCATAAGAGTTCCGTTCATCAAGACCATCTAGATAATATACCTTTATGGTTATGTGGTTACAAGGTTATCGTACCGAAGAGATTGCTCGAAAGGTCGCAATCAATTAGTAGCAAATCAACTCAGCCACCGACTATCTTTGATGACAGTCGTGATTTAGACCGAATAAATGATCATCACGCTCAATTTGATAAATACTCTCCAGACCTGAGAGATACACAAAACCAGCCAGACCTTGAAACACCACATGTTCCAGAGACTAGAAGCATAATTGATGCAGAATTCGGGGTTGAAATAACGATAATCAACAAAAGCGTTGTACAGGAACTGTCCGATGCTATAGTAGCCGAGATTAAAGCTAAGGAAATAAGTAAAGGACGATCCCAAATGGCTATCAAACCCGAAATGAATATTAAGTTCCCAGTGAACAAAACCTATGTTAACAAAAAGCTAAGTAAGGCAGATAACTTAGTAGATAAAACCGAGGTCGAAGAAGGTTATATTGAAGTTAAGAAGGAAATCGAAAGTGATATTGTCAAGGTCAAAGAAGAATTAATGGATACAGACGAATTAGATGTTAATATTGAAGTTAAGAATGAAGTAGACGTAGAAGTTAAAAGTGAGATCGTTGATGAAGTTCCGGTTATTGAAAGTTGCGAAGTTGAAATCAATCAAGAATCGGAAGAGTTTAGAGATGATGAACCCGATATTATTAGTTGGGGTGATATGAACAGTGGCGATGGGACGGAAGACGCTGAGGCAGATAAATATTTCGAATTCCTATCCAAAGAACTAAAGAGAAGAAGAAAAGCCAATGTGAGCATCTCCGCGGATAAATACGAATGCACGAAGTGCAACAAAGCCTGGCCGACCTTGAACAAGTATCTGTTGCACTTTAGCGTACACAACTATAAACCGAGAACTTGCCCGCAATGTATGAAATACAGCCACGGCTCTATGAATAAGCACGTGTCCGCTCATGTGAAGCGTTTATTTGTAATGACACACTCCATCGAGCAATGTAAGGTCAGGGCTCAAAGGCACTACCGTTGCAAGAAGTGTAAGGAGGCCCTCTGCGTCAAGGATTTCTTCAGACACTGGGAAAGTCATTTGGATATCAGTGATAATACCGTTTTTGAGCCGCCGTGTCCTGTTGATATGACAATGAAGCCTCATCTGAACCAAATGATAGAACTGCTCCAAGGCAACGACTACAGCGAATCTTGGAAGCTCCGGTACTGTCAGACCTGCGACAAAAGGATTGAAAGACAAAACGACTGTAAGAGACACTACATCGAACACCTCCTGGCCGATGCATACCAGGAGAAGCATAAATATGGCGTCCTGATGTGTCAGATATGCGGGGCTGGGTTCCAGAGGAGAGAGTACTATAAGAGACACATGCGTGATCACGCGTCACTCCCCGTGTACATTTGCGAGATATGCGACAAAACGTTCAGTGATTCGAGTAACTTCTGCAAGCACAAGAAGGTGCACAACCTGGCCGTGTTGATTTGTGATATTTGTAAAAAGAAGTTCAATAATAAGATGACCCTCATTAAGCATATCGAGATGCATCAACTAATAGAGCCTATTAATTGCAAGACGTGCAAGAAAGTTTTCTACACGCCGTCGAGCTACAACAAGCACTTGAAGGGTAACCGATCCCGCTTTAAGTGTATTATATGCAATACAGTTTATTACTCGCTCAAGGACAAGTGGGATCACATGTGGCAGGTACATAAAGAGAGGAAGTACGAGGCTGACTGTCCACTGTGCGACAAGTCCTTCAGGAAGTTCCAGGAGGTCAAACAACATTTGAGACGTGATCACAATAAAGATAAATTTTACGTTAAAGGAGCAAACTGA
- Protein Sequence
- MEEKTKKRSRKTKLVPREYLDSDDENIAKMQNEIEETIAQMNPLSILRKLEPKQSQKDMEFSVKVEVEEVDQNVAEELKDTEDLQDSDLNIKIHSVKSLCEPTQDAPDVSDDVYDAFIIDEDEIREDIESLSQETTSLADKTIEIYIKNMFGKRQLYIVQSSLDQHLQKKLRGWRTWYKSNRQIRDAPLMYICYVCIKGWWNFSEFREHLKHCRRWKCLHFETTNYQAILQATRGRKVTTFTSENSQNLPIFYSNCWKCNKDRLIHLKSQYVCGGCKTEFHTCTALSFHEGECEMYREKILLDNGMNRENNSATSYCCPICSYKDWDTDRLIIHVKNVHKVRSDLPIEWTIRVCKRCNLHYHETAGHHCPLRKCIEPCVSCTVNFHSLRELTLHLNNLVDDYKCKLCNKILQKSCMEPEHMLEHTNNYIQLIKCPFCPEPMYFLHEKFAKHHKSSVHQDHLDNIPLWLCGYKVIVPKRLLERSQSISSKSTQPPTIFDDSRDLDRINDHHAQFDKYSPDLRDTQNQPDLETPHVPETRSIIDAEFGVEITIINKSVVQELSDAIVAEIKAKEISKGRSQMAIKPEMNIKFPVNKTYVNKKLSKADNLVDKTEVEEGYIEVKKEIESDIVKVKEELMDTDELDVNIEVKNEVDVEVKSEIVDEVPVIESCEVEINQESEEFRDDEPDIISWGDMNSGDGTEDAEADKYFEFLSKELKRRRKANVSISADKYECTKCNKAWPTLNKYLLHFSVHNYKPRTCPQCMKYSHGSMNKHVSAHVKRLFVMTHSIEQCKVRAQRHYRCKKCKEALCVKDFFRHWESHLDISDNTVFEPPCPVDMTMKPHLNQMIELLQGNDYSESWKLRYCQTCDKRIERQNDCKRHYIEHLLADAYQEKHKYGVLMCQICGAGFQRREYYKRHMRDHASLPVYICEICDKTFSDSSNFCKHKKVHNLAVLICDICKKKFNNKMTLIKHIEMHQLIEPINCKTCKKVFYTPSSYNKHLKGNRSRFKCIICNTVYYSLKDKWDHMWQVHKERKYEADCPLCDKSFRKFQEVKQHLRRDHNKDKFYVKGAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -