Mcix028495.1
Basic Information
- Insect
- Melitaea cinxia
- Gene Symbol
- -
- Assembly
- GCA_905220565.1
- Location
- HG992225.1:14054887-14058952[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0018 0.19 13.0 0.6 1 23 297 320 297 320 0.92 2 11 0.017 1.8 10.0 2.5 1 19 338 356 338 360 0.92 3 11 2.1e-05 0.0023 19.1 3.7 2 23 366 387 365 387 0.97 4 11 0.015 1.6 10.1 4.9 1 23 391 414 391 414 0.96 5 11 0.35 38 5.8 1.7 1 20 417 436 417 439 0.93 6 11 0.00033 0.036 15.3 0.3 2 23 521 542 520 542 0.96 7 11 0.23 25 6.4 0.2 2 23 562 584 561 584 0.96 8 11 8.4e-07 8.9e-05 23.5 4.1 1 23 590 612 590 612 0.98 9 11 0.00045 0.049 14.9 2.5 1 23 617 639 617 639 0.98 10 11 0.0017 0.19 13.1 2.7 2 21 646 665 645 668 0.94 11 11 0.027 2.9 9.3 2.3 3 19 707 723 706 728 0.92
Sequence Information
- Coding Sequence
- ATGGAAGAAGAAATTTTTATAACGGACACGGAAGGTCTGTACCCGGTGCTGCTCATACCCAAAAAGTGTACCACTCTCGAGACTAACTGCGAGGCTACTGATAACGTATTTATTGATGTTAATATAACATCACCAGACACCGAAGGGAACGACATGTGTATATATAATGGCTTTTGTAACGTTAAGCTTATTGACAACTACGACGTGAACCTCAACGAGGCTGATACCAACAGTCAGTCCTCCGATAACAATGATAATAGCACCGCTGTCGCGGTGACTGAAGCTGCTAACCAAACCTATCCCCCGTACAGTCAGTCTCAAGTGTGGATAGACCCCACCAGGAGTCCATATGTATACAACAGTTATGATACAGTAGAATCACAGGAGCGCTTCTCGGTCTACCATCAATCACACTCCAGCCACATAACAGTTGAACAACACAACACATACATAACACAAAATGTATTCAATTATAAAGAGTCAATCCAATATTCACCGGTGGATGATACTGAAAACAAAAAGTTAAAAAAAATTCAGTCAACTGATCCCGGTCAACCACCAATAGATCAAAATCTGTATGAAAATGATGAATTTGAATGCGGAGTGTTTCTGTCTCAATTACCCGAGGAGATAATGCAGGAGAAGGAAAATAAGGCCAGAGAGGAGTTAAAATATATTGGGATACAAAGTGAGAACGACGCATTGAAACAGCTGATGTCATCTGATATTCAGTCATTGTCTAAACAGCAGAAAACAATACTGTACTTAGGCCATGACTCACACTATGGTCAAACAATACAGAAAATTGCAGTCAATGATCCTTCCTTAGAATGCGTTGATAGCGGGAAAGATAATGAAGTTGTCCCCAGTCAGACAAACCATAAGAAATATCAATGCGACAAATGCAAGCAGATATTTGACCAAATAACAGCATTCAAGCAACACATGGTTGGTAGTCACAAAAGTCCAAAGATCCCCATTTTAGGCACGGATGGAGTAAGTGAAGTTAAATTCATGTGCACGGATTGTGGTAAAATGCTTAAAAGCCAGAAAAAATTCGAACTTCATTGCTTAGGCCACGGGGATCCAGATTTAGAATGTAATAAGTGCCACAAAGTTTTTGCATCAAAATTCACCCTGAGGAACCACCGTAAGATACATCAACGGAAGCATCAATGTACATGCTGTACGAAAACTTATTCAGATTTTGAGGAATTAAAGACTCATATGGCTAAAATACATTTTATGTTTATTTGCGACTTATGCGACTATACAGCGTCAAAATTTTCCGAATTGGAACTTCATAAGTTGTGTCATAAGGAACGTCATATTAAAGGAACTAGTAATATGGAATTCACTTTATCTCTTGATGATGATTTGATGAGCGAGAGTGATACTCTAACTCCACCGCCTGATGACTGTATCTTAAACTCTGGTAATGATGAATTGTCTAAAATGGATGAAATACAAAGAGCAGATTCGGTCATAGCCAAGGTCATGTCAAATAAGATTTTTCTTCTTCATTCAAAGAAAGCACGACGACACAAAAGATATAAAAAGACATGTGACGTTTGCCTAAAGACATTCGACCGTGTCGGCGACTTGAAGCGACACCTAATTGAACACGTAATAAGGAGCACTCTGGCTAAAACACCCGTCAACAAAAACGGCACCCTCAACATACAATGCGAGGTCTGTCAAGCGGAAACGTTCACAAAGGTAGATAGATATAAGGCCCATTTACGCGAACACGCAAAACTCACCTTATACAAATGCACATTTTGCGATAAGTCCTTCAGCGATTCCAGTAACTTTTCAAAACACAAGAAGATCCACGGCACCACATTCTTCCAGTGCGATCTCTGCCAGAGAAAATTCAACTCTAAGAAGATGATAACACAGCACATGGAGTACCACAACAACAATTCACCGATACCTTGCTTCTATTGCGATAAGGAGTTTCATTTTCCATCGATGCTCAATAAACACATCAAATGTGCTCATACGAGAGAAATGTCCCGCTTCAGATGTAGGTTCTGTCACGATTACTTCAAAACTTTGAAGGAGAAATGGGATCACGAATGGAAGATACATAACGTCCGTAAGATGATCGTTGATTGTCTCATTTGCGGTTCGAAATTTCGGAAATATTCGGAATTGAAGCGGCACTGTAATGACGTTCATGATATGGAGATTCCACCCGCTAAAAAGTTATTAAAGAAAAGAAGATCCCTTTAA
- Protein Sequence
- MEEEIFITDTEGLYPVLLIPKKCTTLETNCEATDNVFIDVNITSPDTEGNDMCIYNGFCNVKLIDNYDVNLNEADTNSQSSDNNDNSTAVAVTEAANQTYPPYSQSQVWIDPTRSPYVYNSYDTVESQERFSVYHQSHSSHITVEQHNTYITQNVFNYKESIQYSPVDDTENKKLKKIQSTDPGQPPIDQNLYENDEFECGVFLSQLPEEIMQEKENKAREELKYIGIQSENDALKQLMSSDIQSLSKQQKTILYLGHDSHYGQTIQKIAVNDPSLECVDSGKDNEVVPSQTNHKKYQCDKCKQIFDQITAFKQHMVGSHKSPKIPILGTDGVSEVKFMCTDCGKMLKSQKKFELHCLGHGDPDLECNKCHKVFASKFTLRNHRKIHQRKHQCTCCTKTYSDFEELKTHMAKIHFMFICDLCDYTASKFSELELHKLCHKERHIKGTSNMEFTLSLDDDLMSESDTLTPPPDDCILNSGNDELSKMDEIQRADSVIAKVMSNKIFLLHSKKARRHKRYKKTCDVCLKTFDRVGDLKRHLIEHVIRSTLAKTPVNKNGTLNIQCEVCQAETFTKVDRYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGTTFFQCDLCQRKFNSKKMITQHMEYHNNNSPIPCFYCDKEFHFPSMLNKHIKCAHTREMSRFRCRFCHDYFKTLKEKWDHEWKIHNVRKMIVDCLICGSKFRKYSELKRHCNDVHDMEIPPAKKLLKKRRSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01506664;
- 90% Identity
- iTF_00986574;
- 80% Identity
- -