Mcix017734.1
Basic Information
- Insect
- Melitaea cinxia
- Gene Symbol
- -
- Assembly
- GCA_905220565.1
- Location
- HG992234.1:917344-943980[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.4e-06 0.00025 22.1 0.1 2 23 955 976 954 976 0.97 2 11 1.3e-05 0.0014 19.7 3.0 1 23 982 1004 982 1004 0.98 3 11 0.00073 0.078 14.2 2.5 1 22 1010 1031 1010 1035 0.94 4 11 1.8e-06 0.0002 22.4 1.5 1 23 1043 1066 1043 1066 0.98 5 11 0.059 6.3 8.2 0.0 1 23 1072 1095 1072 1095 0.94 6 11 0.061 6.5 8.2 0.3 1 12 1104 1115 1104 1118 0.87 7 11 0.061 6.5 8.2 0.3 1 12 1142 1153 1142 1156 0.87 8 11 0.061 6.5 8.2 0.3 1 12 1180 1191 1180 1194 0.87 9 11 0.02 2.2 9.7 0.3 1 13 1218 1230 1218 1231 0.90 10 11 0.061 6.5 8.2 0.3 1 12 1234 1245 1234 1248 0.87 11 11 0.061 6.5 8.2 0.3 1 12 1272 1283 1272 1286 0.87
Sequence Information
- Coding Sequence
- ATGGAACCGAATGATAGTGATTTCAAACTCGAAATTGATGTTACACAGAATATATGCCGGTGTTGTTTATCAACGGACAAAAGAATGACAAAAGTTGATCCTTACCGAGGATATTTTAGCGAATTAGCTGATATTTTTGTGGCAGAATCCGATGGTCTACCGCCATGGATCTGTTATGAGTGTAGTGCGATGCTTCTCAAGAGTGTCCGTTTCAAACAGAAAGTGCTTCAGTCACATTCGGTTCTGTATGAGTACCACAGCAGATGTGTGCCGGAGCTCTGGTCACCTTACTCACCAACAGCAACACGACACTGCTTGAGATCAGTACTATTTAGCTGTGATCTTCTGTTGGTCGATTTACCGTCGGCCAAGAAAGTGGTGTTCCACCCTAAGTTCCCAATAGACGGTCAAGATCCCGAGCTAACGAAATACGCCTGTCCGCTGTTAAGTAAATCCGGTACGCTTGTTTTCGACACAAGTAAAACAAAAAATGGTTACCACAAAGTTTTAGAGGACCTGACCCCTGCTTTGGAAACGTTAGACGAGAAAATCGAGATCCTGTCCTCCGAGCTACGCACTATGCGGGACGCGAACAAGACCACAGCGTCCCCCAAGAAACCGTCTCTTGAGACCGAGCTCGCGGTCCAAGAGGTCAAGATGACCCTCGACTCAATCAAAGAAGGGGTCACAAAGTTAGCTCCACTGACGCCAACCACTTACGCCCAGGCCGCCGCCAAACCTAAGAGCGACACCATCGAGCACAGACCGAATCACACCCTAATAATTGCATCCCGGAATCCTAAGGAAACCAGCGAAAACGTCCTAAATAAAATAAGAACATCGCTGGACTTAAAGAAGTCCGGAGCAAGGGTGGAAAGAGTCAGGAAAGCGCGCGACCAAAAGGTTGTAGTGAGATGCGCGTCAAAAGAAGACATGAACAAGATCAGGGGCCAGGTTCAAAACAACAAAGAACTGACGGTACGGGAGCCCTCTAATCAGAACCCTCTAGTTTGCGTAAGGGGTGTGTTGTCGTGCTACTCTGACGAGGAGATAATTGACCACATTAAGGCCCAAAATGGCCATATCCTCGACGGAGTGGACCGGGCAGCGCTGAAAATGAAGATGTTTGCAGCTACTGCGGCGGCGAGCATACGGGGGGGGAACTGTCCATCGAGGGCTAAGAACGAACAACCTAGATGCGTGAACTGCTCCAGGGCCAAAAGGACAGGTGCTGACCTAGCTCACACTGCATACAGCACAGAGTGCCAGGAACGACAAATTGCTGAGGGTGACCCGGAGGCCAAAGTGGTGGTTCCCAACGAAGATGCGGACAAAACAGGCTGCGCCTTACGCTTTATACAGGTCGAGGCCCAAAAGGCTGAGTTAAGCAATCGGACAAAAGCCACACCGAAACCGAGCCTGATGTCGATGGCGAAGTTTATCCAATCGACGATCTCCCCAAAACGAGGCAAAAAACCGCCCCATTTGTCCCCCAATCAGGTCGATACAAGAGAGCGGCAAATTAAGGCGTTGGAAAGGTTCACCGAGGACGAAAGTTCGAAGCACCCGGAGGCGCCACCAACTGTTCGAACAAGGGCCGATATGGGGCAACATGAGAAACCGAACAACATTAGAAAATTAATAGAAATTCACATACCGGATGACAATATCGTCGGCGACACGAATATTATCGGCGACACGAATATTATCGGTGACACGAATATTATCGGTGACACGAATATTATCGACGACAATGACGTTATCGCCGACGATATCTCTATAAAAGATGAACTTGTTTTCTCAGAAGTTGACGATATGCCGTTACTGGAAATAAGAAAAAGCAAAACTTTTGATTTGAACGAAACAGAGATCAAAAAAGAGAAAAAAGAGAAGAAAAAGAAGGTTAAGAAGAAAATAAAAACCAAAGCACTTAAAGCTTTAAAAGGATTAGATTTTGAGGCATCGTTAGAGGCTGATGGACGAAAGATAAGAGTCATACGAAAGCCGCCGGAAGTAGATGAAACGAAAATTAGGATTATTAAATTAGACCCAGCGGAGCAGTTGAAGCAGCGAGAGGTGTGCGCGCGGCCCGTTCAAGTGCGAGCTCTGCTCGATGCACTTCCCGAGCGCGTACTCGGCGTCCGTGCACGCGCTCACGCACACGCGCCGCTACGAGTGCGTGCCGTGCGGCCGCCGCATGGCCGACCGCCTGGCCATCACCAACCACTACCGGTGAGACCCACCACCACCACCACCACCACTGTACACGGGCCGTGCACGCGCTCACGCACACGCGCCGCTACGAGTGCGTGCCGTGCGGCCGCCGCATGGCCGACCGCCTGGCCATCACCAACCACTACCGGTGAGACCCACCACCACCACCACCACCACTGTACACGGGCCGTGCACGCGCTCACGCACACGCGCCGCTACGAGTGCGTGCCGTGCGGCCGCCGCATGGCCGACCGCCTGGCCATCACCAACCACTACCGTGCGTGCCGTGCGGCCGCCGCATGGCCGACCGCCTGGCCATCACCAACCACTACCGGTGAGACCCACCACCACCACCACCACCACTGTACACGGGCCGTGCACGCGCTCACGCACACGCGCCGCACGAGTGCGTGCCGTGCGGCCGCCGCATGGCCGACCGCCTGGCCATCACCAACCACTACCGGTGAGACCCACCACCACCACCACCACCACTGTACACGGGCCGTGCACGCGCTCACGCACACGCGCCGCTACGAGTGCGTGCCGTGCGGCCGCCGCATGGCCGACCGCCTGGCCATCACCAACCACTACCGCAACGACAAAACCCACCGCGGTCACATGCGGAATCACCACTCGGGGACTCGCGTCAAATGCGATGAATGCGGGAAGAGCTTCGTCAATAGAGATTCTCTTGTCGAACATCAGCTAATACACCAAGGGATCAAGAACTACGAGTGCGAGGAGTGCGGCAAGAAGTTCCGAACGAGGAATCAAATCCGACACCACATGGTCAAGCACAGCGACACAAAAGACTTCTACTGCGTCGAGTGTGACGTCAGATTTAAATCAGCTCACACTTTGAGGCAGCACTTGAGACGAACGTCCAAACACAAGGATAAGAAGAGTCTCAAATTCCAGTGTTCGGTATGCGACAAACGCTTCGAAACGCAAAACCAGCTACAATCGCACACGCGCGTGCAGCACGAAGGTGTCCGCGAGCACCGCTGCGGGGCGTGCGGGGCCGCGCTCGCCTCGCGCGCCTCGCTCAACAAGCACGCGCGCGCCGTGCACGCCGGCCAGCGCGCGCCGCCCGCGCACGTGTGCCACACCTGCGGCAAGATGTTCCGCGTGAGTGTCTCACACGCCGACACACTGTCACACACACACACCTCACCCAACAAGCACGCCGGCCAGCGCGCGCCGCCCGCGCACGTGTGCCACACCTGCGGCAAGATGTTCCGCGTGAGTGTCTCACACGCCGACACACTGTCACACACACACCCCTCACCCAACAAGCACGCCGGCCAGCGCGCGCCGCCCGCGCACGTGTGCCACACCTGCGGCAAGATGTTCCGCGTGAGTGTCTCACACGCCGACACACTGTCACACACACACACCTCACCCAACAAGCACGCCGGCCAGCGCGCGCCGCCCGCGCACGTGTGCCACACCTGCGGCAAGATGTTCCGCCGCGCGCCGCCCGCGCACGTGTGCCACACCTGCGGCAAGATGTTCCGCGTGAGTGTCTCACACGCCGACACACTGTCACACACACACACCTCACCCAACAAGCACGCCGGCCAGCGCGCGCCGCCCGCGCACGTGTGCCACACCTGCGGCAAGATGTTCCGCGTGAGTGTCTCACACGCCGACACACTGTCACACACACACCTCACCCAACAAGCACGCCGGCCAGCGCGCGCCGCCCGCGCACGTGTGCCACACCTGCGGCAAGATGTTCCGCGTGAGTGTCTCACACGCCGACACACTGTCACACACACACCTCACCCAACAAGCACGCCGGCCAGCGCGCGCCGCCCGCGCACGTGTGCCACACCTGCGGCAAGATGTTCCGCGTGA
- Protein Sequence
- MEPNDSDFKLEIDVTQNICRCCLSTDKRMTKVDPYRGYFSELADIFVAESDGLPPWICYECSAMLLKSVRFKQKVLQSHSVLYEYHSRCVPELWSPYSPTATRHCLRSVLFSCDLLLVDLPSAKKVVFHPKFPIDGQDPELTKYACPLLSKSGTLVFDTSKTKNGYHKVLEDLTPALETLDEKIEILSSELRTMRDANKTTASPKKPSLETELAVQEVKMTLDSIKEGVTKLAPLTPTTYAQAAAKPKSDTIEHRPNHTLIIASRNPKETSENVLNKIRTSLDLKKSGARVERVRKARDQKVVVRCASKEDMNKIRGQVQNNKELTVREPSNQNPLVCVRGVLSCYSDEEIIDHIKAQNGHILDGVDRAALKMKMFAATAAASIRGGNCPSRAKNEQPRCVNCSRAKRTGADLAHTAYSTECQERQIAEGDPEAKVVVPNEDADKTGCALRFIQVEAQKAELSNRTKATPKPSLMSMAKFIQSTISPKRGKKPPHLSPNQVDTRERQIKALERFTEDESSKHPEAPPTVRTRADMGQHEKPNNIRKLIEIHIPDDNIVGDTNIIGDTNIIGDTNIIGDTNIIDDNDVIADDISIKDELVFSEVDDMPLLEIRKSKTFDLNETEIKKEKKEKKKKVKKKIKTKALKALKGLDFEASLEADGRKIRVIRKPPEVDETKIRIIKLDPAEQLKQREVCARPVQVRALLDALPERVLGVRARAHAHAPLRVRAVRPPHGRPPGHHQPLPVRPTTTTTTTVHGPCTRSRTRAATSACRAAAAWPTAWPSPTTTGETHHHHHHHCTRAVHALTHTRRYECVPCGRRMADRLAITNHYRACRAAAAWPTAWPSPTTTGETHHHHHHHCTRAVHALTHTRRTSACRAAAAWPTAWPSPTTTGETHHHHHHHCTRAVHALTHTRRYECVPCGRRMADRLAITNHYRNDKTHRGHMRNHHSGTRVKCDECGKSFVNRDSLVEHQLIHQGIKNYECEECGKKFRTRNQIRHHMVKHSDTKDFYCVECDVRFKSAHTLRQHLRRTSKHKDKKSLKFQCSVCDKRFETQNQLQSHTRVQHEGVREHRCGACGAALASRASLNKHARAVHAGQRAPPAHVCHTCGKMFRVSVSHADTLSHTHTSPNKHAGQRAPPAHVCHTCGKMFRVSVSHADTLSHTHPSPNKHAGQRAPPAHVCHTCGKMFRVSVSHADTLSHTHTSPNKHAGQRAPPAHVCHTCGKMFRRAPPAHVCHTCGKMFRVSVSHADTLSHTHTSPNKHAGQRAPPAHVCHTCGKMFRVSVSHADTLSHTHLTQQARRPARAARARVPHLRQDVPRECLTRRHTVTHTPHPTSTPASARRPRTCATPAARCSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -