Basic Information

Insect: Melitaea cinxia
Gene Symbol: -
Assembly: GCA_905220565.1
Location: HG992236.1:9035523-9037109[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.015 1.6 10.1 1.2 3 23 38 58 36 58 0.96

2 12 0.013 1.4 10.3 1.3 2 23 83 104 82 104 0.89

3 12 0.00014 0.015 16.5 3.9 2 23 123 145 122 145 0.96

4 12 0.38 41 5.7 0.3 2 20 177 195 176 197 0.92

5 12 0.00019 0.02 16.1 1.2 1 23 239 262 239 262 0.95

6 12 0.052 5.5 8.4 0.1 2 23 334 357 333 357 0.94

7 12 0.00028 0.03 15.6 1.5 2 23 363 385 362 385 0.95

8 12 0.012 1.3 10.4 0.5 2 23 391 413 390 413 0.92

9 12 8.9e-05 0.0095 17.1 1.2 1 23 418 441 418 441 0.97

10 12 2.8e-06 0.00029 21.9 6.5 1 23 445 468 445 468 0.97

11 12 0.00025 0.027 15.7 0.2 2 23 475 496 474 496 0.96

12 12 0.014 1.5 10.2 2.3 1 23 502 524 502 524 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.015	1.6	10.1	1.2	3	23	38	58	36	58	0.96
2	12	0.013	1.4	10.3	1.3	2	23	83	104	82	104	0.89
3	12	0.00014	0.015	16.5	3.9	2	23	123	145	122	145	0.96
4	12	0.38	41	5.7	0.3	2	20	177	195	176	197	0.92
5	12	0.00019	0.02	16.1	1.2	1	23	239	262	239	262	0.95
6	12	0.052	5.5	8.4	0.1	2	23	334	357	333	357	0.94
7	12	0.00028	0.03	15.6	1.5	2	23	363	385	362	385	0.95
8	12	0.012	1.3	10.4	0.5	2	23	391	413	390	413	0.92
9	12	8.9e-05	0.0095	17.1	1.2	1	23	418	441	418	441	0.97
10	12	2.8e-06	0.00029	21.9	6.5	1	23	445	468	445	468	0.97
11	12	0.00025	0.027	15.7	0.2	2	23	475	496	474	496	0.96
12	12	0.014	1.5	10.2	2.3	1	23	502	524	502	524	0.96

Sequence Information

Coding Sequence: ATGCAATCAGATGTTACCTCAACTCGACTAACGGCGACGCAGCTACAAAATCTTCAAATACTATTATCAAACACAAGTGTTATACCGTTTGAATGTAGAGACGGTCTTGCTTGTTTATTTTGTAACAAACAAATTTCTAATTACGCTGATTTTAAAAAACACACTAAATCTCATGACACGAATGTTATTAAGATATTTTTAAAAAATTGTGAAAGTAATGTTATTAAAATTGATGTTTCCGAGACAGTTTGCGAAATATGCGATTTGTCTTTTAATTACCACGATCTACTACACCATTTGATAGCTTTTCACGATTTTCAAGACACAGACACGTTTTATATTAAAACATTTAACATACTAGATTTAAAATGTTATGATTGTGATAGGAATTTTTCAGTTTTTTCTCATTTTGAACGTCATGTACGAAAAAAACATAATTCAAATGATTCTTTACTTAAAGATTATGGCAATAGAGTCGAAAATATAAGCCCTAAAACTAAAGCGAAAATAGTTGCAAAAAATCATCAAACTTGTCCAAAATGTCTTAAGATATTAACGTCGAAATTAGGTTTTAAGATTCATTTAACGAAATGTGGTTTGAAGAAAGAGTCGACGATAAAAATTAAAACTTCTAACACTCTTAGAATAAGGCAAAACATTGCCAATATCATAAATATGTCTAATGCTTTACCTTTTAAATTCTTTAAAAATAAATTTCGTTGTTTTTACTGTTCTAAAGATTTTACCGATTTCGATCAATTGCGCGATCATGCGGTAACGGATCATCCTCACTTCAACCAAGAATGTAAAGCAATGAAAATGATTAAAGGTAGAGATATCAATGTCAAAATAGATATTTCAAATCTTACCTGTAAACTTTGCTTTGAAAACCCCATAGCTCTTAATGACTTAATCAATCATTTAATTTCTAAACACCATGTAAACTATGATAAATCGATCGATTGCCTGCAACCTTTTAGAGTAGTCAAAGATAACATGCCCTGTCCAATTTGTCCGGATACTGTCTTTAGATATTTTAAGAAACTTCTCGAACACATGAACGAATTCCATTCCGATAATAATATCGTCTGCGCGCATTGTGGTCTAACTTTTAGAGGACATCCGAACTATCGTGCTCATATGTCTCGATATCACAGAAGTAAGGCGTGTCAATGTCCCGATTGTAATATGGAATTTTGGAATTTAGAAAAATTGGCTCGCCACAGAGCTAATATCCACGGTACGAAAAAGTACAAATGTCCTCAATGTGTTGAAAAATTTATAACACAGCATTTGATGCGTAAACATCAAATAATTGTTCACGGTTTTGGTCACAAGTGCCCATACTGTAGTAAAATGTTTACACGCAATTCTCATATGAAGAACCACGTGAGACGGCTTCATTTGAAAGAAAAAAATGTGGAATGTACAGTTTGCAAGGAGAAGTTTTTCGATAGGGCACTTTTGAATGTGCATATGGTCAAACATCTGGGTGAGAGAAATTACCACTGTGATGTATGCGGAAAGAAATTTCTATGGAAGAAAAATCTTCGCGGACACATGACGTCCCATGAACGAAATATCTGA
Protein Sequence: MQSDVTSTRLTATQLQNLQILLSNTSVIPFECRDGLACLFCNKQISNYADFKKHTKSHDTNVIKIFLKNCESNVIKIDVSETVCEICDLSFNYHDLLHHLIAFHDFQDTDTFYIKTFNILDLKCYDCDRNFSVFSHFERHVRKKHNSNDSLLKDYGNRVENISPKTKAKIVAKNHQTCPKCLKILTSKLGFKIHLTKCGLKKESTIKIKTSNTLRIRQNIANIINMSNALPFKFFKNKFRCFYCSKDFTDFDQLRDHAVTDHPHFNQECKAMKMIKGRDINVKIDISNLTCKLCFENPIALNDLINHLISKHHVNYDKSIDCLQPFRVVKDNMPCPICPDTVFRYFKKLLEHMNEFHSDNNIVCAHCGLTFRGHPNYRAHMSRYHRSKACQCPDCNMEFWNLEKLARHRANIHGTKKYKCPQCVEKFITQHLMRKHQIIVHGFGHKCPYCSKMFTRNSHMKNHVRRLHLKEKNVECTVCKEKFFDRALLNVHMVKHLGERNYHCDVCGKKFLWKKNLRGHMTSHERNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00986544;
90% Identity: iTF_00986544;
80% Identity: -