Mcix017329.1
Basic Information
- Insect
- Melitaea cinxia
- Gene Symbol
- -
- Assembly
- GCA_905220565.1
- Location
- HG992234.1:6440992-6450688[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.087 9.3 7.7 1.2 1 23 242 264 242 264 0.98 2 9 0.0019 0.2 13.0 0.0 1 23 271 293 271 293 0.94 3 9 0.00036 0.038 15.2 0.2 3 23 324 345 323 345 0.97 4 9 9.7e-06 0.001 20.1 0.2 2 23 355 376 354 376 0.96 5 9 3.3e-06 0.00035 21.6 1.2 1 23 381 403 381 403 0.99 6 9 0.0023 0.25 12.6 1.4 1 21 410 430 410 435 0.93 7 9 0.00015 0.016 16.4 0.5 1 23 440 463 440 463 0.98 8 9 1.5e-05 0.0016 19.6 0.3 1 23 469 491 469 491 0.98 9 9 0.00052 0.056 14.7 0.9 2 21 501 520 501 521 0.95
Sequence Information
- Coding Sequence
- ATGAACCTGTGTCCTGACTCTCAGCTGTGTTACATCTGTTGCCATGTTCTGAACAAGCTCTCATTATTCCGGTCAATATGCTTAAAACGGAGTTTAGAATATCCAGTATTATTCAGTGAAAAGGGCACCATAAATCTTCAACGTAGCAACTTAGAAGTGCATGTTCTCTGTCCAGACGACTGCATACAGTATCATCATGTCGATCAATCATACAATTTCTCATACAGCAGTGATTTTAATGAGAACACGGGCTACAATAATGATAATGAATATGTGAAATTTGAAGATGAAAATGATTTTAATGATAATTTCAACACGTGTCAATATGAAACTATTAACAATAAAAATATTGATAATAATGATTTAGCTATCGGAACAGATAGTGCTATAAATGAAAATATTCAAGAAAAATTTAATGTAACTGAAACAGTTACAAATGATATAAATGAGAGATTTGATCATAATTGTGACAATGATGAAGTTAACGATGACTGTACTGATGATAGAAATAATGAAATTGTTGAAGCTAATGAAATAAATGAAGAAGTAATAAATGATAATTTGGACAATGATCTTGAAAAGGTAGATAAAGCTGAAGTAAGGAAGACAAAAAAATTGAACAGATCAAAAAAGAAATGTTTCAAGAAGATAATTCTAAGTCTAGAAGAACAGAAGGCAGCACTAGAAGCAAGTAAAAGAGAGAAGAAGTACATAGAATCTGAATTTAAATGTTACAATTGTGCCTTAGGTTTTCTCTTCAAAGATACTTATCAAGCGCACATGATGAGACATGAAGAGTCCAACGGCGAGTACCAGTGCGCGACGTGCACGCTGCGGTTCGCGTCGGCGCCGCAGCTGCGCGCGCACGCGGCGGGCCACCGCGAGCGCCACGTGTGCGCGTGCGGGGCGCGCCTCACGCCGCGCGCCGCCCGCGCGCACGCGTGCCGCCGCCGCGCGCAGGCCGCGGCGTGCCAGTTCTGCGGGAACTTGTTCAGAGATGCGAGTGGATTACAGCAACACCTTAGGAGGGTGCATGCAAGCAAAGCCGGGGGTCGTTTGTTGTCTTGCATGGTTTGCGGTGAAAGTTACAAGAACCAAGCTGCTCTACGGACTCACATGATAAAACATATAAAACGTAAATTCCAGTGCGACAAATGCCCAGCGACCTACAGCAGTCCGTATACCCTCACCCAACACAAGAGGACGCACGAGAATGGTGGGCAACTACACTATTGCACTACTTGCGGTGTTGGTTACAGTACTAGAAAAAGTTTGTTGGCTCATAAGCGTAATACGATGAATCATCAGCAGACTTTGTTCGAATGCCCCATCTGCACCCGTCTCTGTCCAACTCAAAGGTCCCTGGCCTCACACATACAAACGGTCCACTCGACCACTAAAGAGTACACCTGTCCGCAATGCCCCGCTCGCTACACAAGTAGGAAGTCACTTGTACGACATATCGGTACACATAACAAGAAAACTGAAGTCAAGATGGCGGTTTGTCACTTGTGTGGGAATTCTTTTAAGGGTAACAATAAATTAAACAGACATCTACGAGATGTTTGCGAAAAGACGAAATTGGAGGAAGAAATATCAGATATTTATTATTAG
- Protein Sequence
- MNLCPDSQLCYICCHVLNKLSLFRSICLKRSLEYPVLFSEKGTINLQRSNLEVHVLCPDDCIQYHHVDQSYNFSYSSDFNENTGYNNDNEYVKFEDENDFNDNFNTCQYETINNKNIDNNDLAIGTDSAINENIQEKFNVTETVTNDINERFDHNCDNDEVNDDCTDDRNNEIVEANEINEEVINDNLDNDLEKVDKAEVRKTKKLNRSKKKCFKKIILSLEEQKAALEASKREKKYIESEFKCYNCALGFLFKDTYQAHMMRHEESNGEYQCATCTLRFASAPQLRAHAAGHRERHVCACGARLTPRAARAHACRRRAQAAACQFCGNLFRDASGLQQHLRRVHASKAGGRLLSCMVCGESYKNQAALRTHMIKHIKRKFQCDKCPATYSSPYTLTQHKRTHENGGQLHYCTTCGVGYSTRKSLLAHKRNTMNHQQTLFECPICTRLCPTQRSLASHIQTVHSTTKEYTCPQCPARYTSRKSLVRHIGTHNKKTEVKMAVCHLCGNSFKGNNKLNRHLRDVCEKTKLEEEISDIYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00986521;
- 90% Identity
- iTF_00986521;
- 80% Identity
- -