Basic Information

Insect: Melitaea cinxia
Gene Symbol: -
Assembly: GCA_905220565.1
Location: HG992234.1:11951173-11974092[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 8.2e-07 8.7e-05 23.5 1.9 1 23 19 41 19 41 0.98

2 15 0.00089 0.095 14.0 6.1 1 23 47 70 47 70 0.98

3 15 0.00097 0.1 13.8 5.4 1 23 76 98 76 98 0.97

4 15 1.5e-05 0.0016 19.5 1.3 1 23 104 126 104 126 0.97

5 15 6.2e-05 0.0066 17.6 4.4 1 23 132 154 132 154 0.97

6 15 4.5e-05 0.0048 18.1 0.9 1 23 161 184 161 184 0.95

7 15 0.001 0.11 13.8 0.1 3 23 194 215 193 215 0.95

8 15 0.0023 0.24 12.7 0.7 2 23 222 243 219 243 0.93

9 15 6.9e-05 0.0074 17.5 1.7 1 23 249 273 249 273 0.95

10 15 0.0021 0.23 12.8 4.8 1 23 279 301 279 301 0.98

11 15 4.4e-06 0.00047 21.2 0.9 2 23 309 331 308 331 0.96

12 15 0.9 97 4.5 0.6 1 23 337 360 337 360 0.91

13 15 0.018 1.9 9.9 1.6 2 20 367 385 367 387 0.95

14 15 1.2 1.3e+02 4.1 4.0 1 20 645 664 645 667 0.90

15 15 0.00028 0.03 15.6 2.7 1 23 818 840 818 840 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	8.2e-07	8.7e-05	23.5	1.9	1	23	19	41	19	41	0.98
2	15	0.00089	0.095	14.0	6.1	1	23	47	70	47	70	0.98
3	15	0.00097	0.1	13.8	5.4	1	23	76	98	76	98	0.97
4	15	1.5e-05	0.0016	19.5	1.3	1	23	104	126	104	126	0.97
5	15	6.2e-05	0.0066	17.6	4.4	1	23	132	154	132	154	0.97
6	15	4.5e-05	0.0048	18.1	0.9	1	23	161	184	161	184	0.95
7	15	0.001	0.11	13.8	0.1	3	23	194	215	193	215	0.95
8	15	0.0023	0.24	12.7	0.7	2	23	222	243	219	243	0.93
9	15	6.9e-05	0.0074	17.5	1.7	1	23	249	273	249	273	0.95
10	15	0.0021	0.23	12.8	4.8	1	23	279	301	279	301	0.98
11	15	4.4e-06	0.00047	21.2	0.9	2	23	309	331	308	331	0.96
12	15	0.9	97	4.5	0.6	1	23	337	360	337	360	0.91
13	15	0.018	1.9	9.9	1.6	2	20	367	385	367	387	0.95
14	15	1.2	1.3e+02	4.1	4.0	1	20	645	664	645	667	0.90
15	15	0.00028	0.03	15.6	2.7	1	23	818	840	818	840	0.98

Sequence Information

Coding Sequence: ATGAACACACAGGCGAAGAAAAATGTTAAATCAACTAAAAATACGTTTGGAGAATACAAGTGTAAAATATGTACCAAGGTATTCTCCGATAATTCAGGACTCTCCCACCACATCCAACTCCACAACACAGACCGTCCGTTCTCGTGCAAGCTCTGTTCGTACACGTGTAAAACAAAGAAATACTTGACGAAACACGTCAAGACCGTCCACCAAGCGGCAACGGAGCACGAGTGCACTTACTGTGATAGAAAATTCCACTACAAAAGTCTGTTGGACCAACATATGTACATACATACCGATGCGAGGCCTTATAAGTGCGATGTGTGCGGTAAAGGCTTTAATACGACGTACTCGTTGAACACACACAAATACATACATTCAGATTTGAAACCGTTCAAATGCAAGTACTGCGATTACGCCTGTAGGGATAGTTCGACGCTACGCAAGCACGAGGAGAGACACGTGGGCATATCGAGGCGTTATCAGTGCAAAATGTGTGATAAGAGTTATAAAACGAAAAGTATCCTAAAGGATCACATTTCCGAAGCGCATTTGGACGTCGAAGTTAAGAACAGACCGTGTGACGAATGCGGGAAGTTGTTCAAGTCCGTTACGGCTTTGAATACTCACGTTAAATTGGTTCACGACAAGATATATTCTTGTAAGTGCGACATATGCGGGGTCGAAATAAGCAATAAGTACAACATGGCGGCGCACCTCACCAAACACGTACACTTTAAACCCTTCGAATGCAGCTTTGATGGCTGTACAAAGAGATTTAAGGATAAGAGTACCCTCAAAAAGCACAGTATAATACACTACCCAGACAAACAGTTCACTTGCAACTTGTGCGAGAGACGCTTCACACGGATCTGCCGTCTGAAGGTTCATATGAAGCAGCATCAGTACAAAGAGAAGTGCGTTGTTTGCGACTACTGTGGGACTAGTTTCTACAATAAGAACTATCTCCGTAACCACATCAACAAGAAACATTGCATACGAGAGAAATTCATTTGCGACCACTGCGGGTTTCTTTCATACAACAAGCCGAGCATTGTGATGCACATCAAATACGGTCACGGCTCTGAAAATGACAGACAGTGCAAGATATGCAAGAAGATATTCAAACTGCACAAATATTTGAAGTTGCACTACTGGAACACGCACTGCATCAAGTACAACATGGCGCCGAGGAAGCCGAAACAAAAAAGGCAGAAATTGATAATAATAAAGGAAGAGGCCAGCGATACTAAAGAGATGGAACTGCTGCATGAAGTCAAAGTCGAACCTCTCAGCGATTCGGAACAAGGCTCGGGGACAGAGAAACGTTCGAAGAACTTTGGCGCGGACGCTTCGAGAGTCAGACGCGACAAAACAAACAAACGGTCGATAAGGTTCGAGGACTTCTTCATCGAGCATATTATGAAGCCGAATGATAATGTTCAAGCAAAAATCAAAATCGTAAACGGTAGACAGTTGGACGAAATATACAATAATTTAATTATAGAAGAGAAAATGGAAACCGCGAAAGAAAATACGAAAGAATCTATAGAAAATAGTTTAGAAATGATTGAACGGAATAATGAATCAAGTGCCACAGGAAGAATTGATACCAACAATGAATCAAATGGCGACGAAAGAATTGAACAAAATAATGATTCAAATCGCAGAGAAGCAAATGAACATAAAAACGAACCAAGTGTCAAAGAAGTAATTGAACAAAATCGCGAATCAATTGACAAAGACGGAATAAATGAAAATAATGATTCAATTTTGGGAAGTGATCGAGGCGATGATGATAACGTAGGAAACGATGATTCGGATTACGTTAATGAAGATCGTGAGAATAAAGATTTAGTTGAAAATGATTCTTCGAATCCAGATCACGTTAATGATAAAAGCGCACAGTCGAAGAGAATCAAAATCAATACGCACCAGTGTTATGTTTGTTTTAAGCTCTACGAAACTAAGGACAAGTTAATAGCTCACTGCCAGGAACATTTCGACGTTTGCAACATTAATATGCTAAAGAAGTGTCCGCTATGCGACTATGTCACCCAACTGAGTCTCCCGAGGCATATGTTACTAGTACACAAAATAAATATCAAAATTAACTACGGAAAGATCAGGGAGAGGAAAAATAATAATAACGGCTCGAGATTCTATTACAACGTCGACAGTGAAAAGATTAAGGAAATTGAGATTATACCAAGTATCAAGAATCTTAACAGACGAGCTTATGTCGAGTTGGATAAACGAAAAAGGGAAATGAACAACAAAACTATTACGAAGACTAAATTAGTGAAGAAAAAAGGTGAATGGATTGTCGAAAAGGTGAAAATCGATGCTAAATCAAGCGAAGTAGTCTTGCCCGAAATGGAAAATTCGGATTATTTGGGGGAGATGAAACTTTTGTACAGAAAAGCGAAAAATAATGGACAGAAAATGCTCTTTCCTTGCAATAAGTGCGAGAAAGTTTGTCAAACTTTGAGCGCTTTAAAGTTGCACACGAGAAAACACGATCCAAATAAAAAGCCGTTCAAGAAAAAAGTTTGGAAGCACAAACTAAGTGAGGAGCAATTGATGAAAATGAACGAAAAACCGGTTTTATCGAATACGAATCGATACGAAAAACCGAAACCGATAATAAACAAACATAAATGCGATCCGAAACTGAAGGAATTCTACGAGAATAACATCAAAGGCGGCGACATCGAGTTTTGGCATTTTTTGAAGATTTTCAACAAAATGTCGAGAGAAAATGTCAACGATTTTACCGATTTGGAAAATCGTAGGGAATACGGGATACATTTGAGTGTACCATCGAAAGATTCTCTCAAAGTTAAACGGAAGACAATAATAAAAGATCGGCCAGTTAAAAATGCCTTTGAGCGTAAAGTTATGATTAGTAAAAAAGATTATCAAAAGAGAAAGGCTATGATTGATATTTTGAGACGAAATTTACCTCAAAATAAACCCAATTAA
Protein Sequence: MNTQAKKNVKSTKNTFGEYKCKICTKVFSDNSGLSHHIQLHNTDRPFSCKLCSYTCKTKKYLTKHVKTVHQAATEHECTYCDRKFHYKSLLDQHMYIHTDARPYKCDVCGKGFNTTYSLNTHKYIHSDLKPFKCKYCDYACRDSSTLRKHEERHVGISRRYQCKMCDKSYKTKSILKDHISEAHLDVEVKNRPCDECGKLFKSVTALNTHVKLVHDKIYSCKCDICGVEISNKYNMAAHLTKHVHFKPFECSFDGCTKRFKDKSTLKKHSIIHYPDKQFTCNLCERRFTRICRLKVHMKQHQYKEKCVVCDYCGTSFYNKNYLRNHINKKHCIREKFICDHCGFLSYNKPSIVMHIKYGHGSENDRQCKICKKIFKLHKYLKLHYWNTHCIKYNMAPRKPKQKRQKLIIIKEEASDTKEMELLHEVKVEPLSDSEQGSGTEKRSKNFGADASRVRRDKTNKRSIRFEDFFIEHIMKPNDNVQAKIKIVNGRQLDEIYNNLIIEEKMETAKENTKESIENSLEMIERNNESSATGRIDTNNESNGDERIEQNNDSNRREANEHKNEPSVKEVIEQNRESIDKDGINENNDSILGSDRGDDDNVGNDDSDYVNEDRENKDLVENDSSNPDHVNDKSAQSKRIKINTHQCYVCFKLYETKDKLIAHCQEHFDVCNINMLKKCPLCDYVTQLSLPRHMLLVHKINIKINYGKIRERKNNNNGSRFYYNVDSEKIKEIEIIPSIKNLNRRAYVELDKRKREMNNKTITKTKLVKKKGEWIVEKVKIDAKSSEVVLPEMENSDYLGEMKLLYRKAKNNGQKMLFPCNKCEKVCQTLSALKLHTRKHDPNKKPFKKKVWKHKLSEEQLMKMNEKPVLSNTNRYEKPKPIINKHKCDPKLKEFYENNIKGGDIEFWHFLKIFNKMSRENVNDFTDLENRREYGIHLSVPSKDSLKVKRKTIIKDRPVKNAFERKVMISKKDYQKRKAMIDILRRNLPQNKPN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -