Mcix017976.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Melitaea cinxia
Gene Symbol
-
Assembly
GCA_905220565.1
Location
HG992234.1:3552122-3602488[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 0.2 22 6.5 0.9 1 23 287 309 287 309 0.97
2 27 0.029 3.1 9.2 1.2 1 23 490 513 490 513 0.94
3 27 0.029 3.1 9.2 1.2 1 23 537 560 537 560 0.94
4 27 0.029 3.1 9.2 1.2 1 23 584 607 584 607 0.94
5 27 0.029 3.1 9.2 1.2 1 23 631 654 631 654 0.94
6 27 0.029 3.1 9.2 1.2 1 23 678 701 678 701 0.94
7 27 0.029 3.1 9.2 1.2 1 23 725 748 725 748 0.94
8 27 0.029 3.1 9.2 1.2 1 23 772 795 772 795 0.94
9 27 0.029 3.1 9.2 1.2 1 23 819 842 819 842 0.94
10 27 0.029 3.1 9.2 1.2 1 23 866 889 866 889 0.94
11 27 0.029 3.1 9.2 1.2 1 23 913 936 913 936 0.94
12 27 0.029 3.1 9.2 1.2 1 23 960 983 960 983 0.94
13 27 0.029 3.1 9.2 1.2 1 23 1007 1030 1007 1030 0.94
14 27 0.029 3.1 9.2 1.2 1 23 1054 1077 1054 1077 0.94
15 27 0.029 3.1 9.2 1.2 1 23 1101 1124 1101 1124 0.94
16 27 0.029 3.1 9.2 1.2 1 23 1148 1171 1148 1171 0.94
17 27 0.029 3.1 9.2 1.2 1 23 1195 1218 1195 1218 0.94
18 27 0.029 3.1 9.2 1.2 1 23 1242 1265 1242 1265 0.94
19 27 0.029 3.1 9.2 1.2 1 23 1289 1312 1289 1312 0.94
20 27 0.029 3.1 9.2 1.2 1 23 1336 1359 1336 1359 0.94
21 27 0.029 3.1 9.2 1.2 1 23 1383 1406 1383 1406 0.94
22 27 0.043 4.6 8.7 0.5 3 21 1423 1441 1422 1446 0.93
23 27 0.0066 0.71 11.2 0.1 3 23 1494 1515 1492 1515 0.95
24 27 2.8e-05 0.003 18.7 1.7 2 23 1525 1546 1524 1546 0.97
25 27 0.00044 0.047 14.9 0.2 1 23 1552 1574 1552 1574 0.98
26 27 3.8e-05 0.0041 18.3 0.2 3 23 1582 1602 1580 1602 0.97
27 27 2.2e-07 2.4e-05 25.3 2.0 1 23 1608 1631 1608 1631 0.98

Sequence Information

Coding Sequence
ATGTTCATAGTTATTACGATTCGGGAAATTCACCAAACAATTACTACAGGTAATTTTTTCTCTGTGCACTTTACACATGTGTTGATTCAAATATTTCCTTCCGACGAAATGTCTCCTCGCATCGGAATCGATGTTGTAATGACAGTCTGGTATCGAGCAGTAATATTCCACGTCAACAACAAAATTTTCGTCGACGTTGTGTTGTTTTATAATATGTTGCAACAAATCGTTCTTTTTTTTAAAACGTTCTGGACACTTCCGCGTGCAACGCTTAACTCCACCTACATCCAGTCTCTGTGTTATATATGCGTGAAACGATTGAAACATTGCCACAAATTAATTGAACAAGCAGTTGAAACAGACAAGTTATTAAGAGATGCTCTCAGATGCGGAGTTGAGATTGATAATATAGAATGTATACATACATTCAAGCTGTCTGTATCATCGACTATTAACGTATCTCTTAATCCTGTGGAAAATAATATAAAGGAAGAGCCCGCTGATATAAAAGAAGAATTAGAAGACAATAGGGATACCAGGAAAAAAACTCTCTCCGATCATATTGAAGAGGATCAAATAGACCGAAATATTTCAACGGGGCCAAAAGAAACATACTCTATAGACGGATCAAGGTCAGATGAAGATGTCAAAGATAAATCGGATTCAGATGATGATGTGCCTCTTAAGAATATAAGCTTGAAGATACATTCGGAGATGAAGGATAATGTGAAAAATAAGAAATGTAGGAAGTTCAATAGAGATACAAAAGTGGACGCTCAAGAAATAATTCTAGATGAAGAGCAACAATTAGTTGAGATGCTGGAACGAGCCAAGTCCCTCAATTATCTTAATTCTCCGTACAAGTGTGACCTTTGCTACAAGGGCTTTCTGGACCCCACCGCCTTTGACAAACACAAGGAAAAGCATGACGAGGCATCAAGCGAAAGCTCACGAACAATGGCACAATGGACACACATACCCTTGCAAGCCCTGCGGGCGAACCTTCAGCAAGCCGACGTCGTACCTGTCGCACGTGCGCGCGCGGCACGCCGGCGACCACGTGTGTCGCGAGTGCGGGGACAGCTTCGCGCGCCGGCACGGCCTGCTCATGCACGTCGCCAAGACGCACCGGAGCGCGCCCGACGTACGTACTACACTACACACTACACATACACACTACACACTACACGCCGGCGACCACGTGTGTCGCGAGTGCGGGGACAGCTTCGCGCGCCGGCACGGCCTGCTCATGCACGTCGCCAAGACGCACCGGAGCGCGCCCGACGTACGTACTACACTACACACTACACATACACACTACACACTACACGCCGGCGACCACGTGTGTCGCGAGTGCGGGGACAGCTTCGCGCGCCGGCACGGCCTGCTCATGCACGTCGCCAAGACGCACCGGAGCGCGCCCGACGTACGTACTACACTACACACTACACACTACACGCCGGCGACCACGTGTGTCGCGAGTGCGGGGACAGCTTCGCGCGCCGGCACGGCCTGCTCATGCACGTCGCCAAGACGCACCGGAGCGCGCCCGACGTACGTACTACACTACACACTACACATACACACTACACACTACACGCCGGCGACCACGTGTGTCGCGAGTGCGGGGACAGCTTCGCGCGCCGGCACGGCCTGCTCATGCACGTCGCCAAGACGCACCGGAGCGCGCCCGACGTACGTACTACACTACACACTACACATACACACTACACACTACACGCCGGCGACCACGTGTGTCGCGAGTGCGGGGACAGCTTCGCGCGCCGGCACGGCCTGCTCATGCACGTCGCCAAGACGCACCGGAGCGCGCCCGACGTACGTACTACACTACACACTACACATACACACTACACACTACACGCCGGCGACCACGTGTGTCGCGAGTGCGGGGACAGCTTCGCGCGCCGGCACGGCCTGCTCATGCACGTCGCCAAGACGCACCGGAGCGCGCCCGACGTACGTACTACACTACACACTACACATACACACTACACACTACACGCCGGCGACCACGTGTGTCGCGAGTGCGGGGACAGCTTCGCGCGCCGGCACGGCCTGCTCATGCACGTCGCCAAGACGCACCGGAGCGCGCCCGACGTACGTACTACACTACACACTACACATACACACTACACACTACACGCCGGCGACCACGTGTGTCGCGAGTGCGGGGACAGCTTCGCGCGCCGGCACGGCCTGCTCATGCACGTCGCCAAGACGCACCGGAGCGCGCCCGACGTACGTACTACACTACACACTACACATACACACTACACACTACACGCCGGCGACCACGTGTGTCGCGAGTGCGGGGACAGCTTCGCGCGCCGGCACGGCCTGCTCATGCACGTCGCCAAGACGCACCGGAGCGCGCCCGACGTACGTACTACACTACACACTACACATACACACTACACACTACACGCCGGCGACCACGTGTGTCGCGAGTGCGGGGACAGCTTCGCGCGCCGGCACGGCCTGCTCATGCACGTCGCCAAGACGCACCGGAGCGCGCCCGACGTACGTACTACACTACACACTACACATACACACTACACACTACACGCCGGCGACCACGTGTGTCGCGAGTGCGGGGACAGCTTCGCGCGCCGGCACGGCCTGCTCATGCACGTCGCCAAGACGCACCGGAGCGCGCCCGACGTACGTACTACACTACACACTACACATACACACTACACACTACACGCCGGCGACCACGTGTGTCGCGAGTGCGGGGACAGCTTCGCGCGCCGGCACGGCCTGCTCATGCACGTCGCCAAGACGCACCGGAGCGCGCCCGACGTACGTACTACACTACACACTACACATACACACTACACACTACACGCCGGCGACCACGTGTGTCGCGAGTGCGGGGACAGCTTCGCGCGCCGGCACGGCCTGCTCATGCACGTCGCCAAGACGCACCGGAGCGCGCCCGACGTACGTACTACACTACACACTACACATACACACTACACACTACACGCCGGCGACCACGTGTGTCGCGAGTGCGGGGACAGCTTCGCGCGCCGGCACGGCCTGCTCATGCACGTCGCCAAGACGCACCGGAGCGCGCCCGACGTACGTACTACACTACACACTACACATACACACTACACACTACACGCCGGCGACCACGTGTGTCGCGAGTGCGGGGACAGCTTCGCGCGCCGGCACGGCCTGCTCATGCACGTCGCCAAGACGCACCGGAGCGCGCCCGACGTACGTACTACACTACACACTACACATACACACTACACACTACACGCCGGCGACCACGTGTGTCGCGAGTGCGGGGACAGCTTCGCGCGCCGGCACGGCCTGCTCATGCACGTCGCCAAGACGCACCGGAGCGCGCCCGACGTACGTACTACACTACACACTACACATACACACTACACACTACACGCCGGCGACCACGTGTGTCGCGAGTGCGGGGACAGCTTCGCGCGCCGGCACGGCCTGCTCATGCACGTCGCCAAGACGCACCGGAGCGCGCCCGACGTACGTACTACACTACACACTACACATACACACTACACACTACACGCCGGCGACCACGTGTGTCGCGAGTGCGGGGACAGCTTCGCGCGCCGGCACGGCCTGCTCATGCACGTCGCCAAGACGCACCGGAGCGCGCCCGACGTACGTACTACACTACACACTACACATACACACTACACACTACACGCCGGCGACCACGTGTGTCGCGAGTGCGGGGACAGCTTCGCGCGCCGGCACGGCCTGCTCATGCACGTCGCCAAGACGCACCGGAGCGCGCCCGACGTACGTACTACACTACACACTACACATACACACTACACACTACACGCCGGCGACCACGTGTGTCGCGAGTGCGGGGACAGCTTCGCGCGCCGGCACGGCCTGCTCATGCACGTCGCCAAGACGCACCGGAGCGCGCCCGACGTACGTACTACACTACACACTACACATACACACTACACACTACACGCCGGCGACCACGTGTGTCGCGAGTGCGGGGACAGCTTCGCGCGCCGGCACGGCCTGCTCATGCACGTCGCCAAGACGCACCGGAGCGCGCCCGACGTACGTACTACACTACACACTACACATACACACTACACACTACACGCCGGCGACCACGTGTGTCGCGAGTGCGGGGACAGCTTCGCGCGCCGGCACGGCCTGCTCATGCACGTCGCCAAGACGCACCGGAGCGCGCCCGACAAGCCTAAACCAGAACCCGCCCCGGACGGATTCTGTTCAGAATGCAACATACAGTTTTCATCATCCGAAGCGAGAACAAGACACATTTTGATATCAAAACGACACGCCATTTTTAAGGATAATGAGCCGCAGTGCTCGCTGTGCGGCGCGGCGGTGCCGGCGGCGGGGCGCGCGGAGCACGCGCGGCGGCACGTGCGCGCGCTGGCGGCGCCGCGCGCCCGCGCCGCGCCCGCGCTGCTGCTGGCCTGCGCGCAGTGTGAAGCCACATTCCCTAGTCGAGCTAAACTACAGAACCACGTCAAGAGGATACATCTGGGTTTGAAGTACAACAAGAATATCGTATGTGAAATATGTGGGAAGAATTGTACCTCGAACGCGACGCTGCGCTACCACCAGCGCCGCCACACCGGCGAGAAGCCCTTCCCCTGCGACAAGTGCGCCGCGCGCTTCATCAGCCGCGAGCAGCTGCGCATCCACGCGCGCACGCACTCCGGCGAGCGGCCCTACGGCTGCGCGCTCTGCGGGCAGCGGTTCAGTCAGAAGCCCGCGCTCAACAGGCACTACCGGGTCCACACGGGGGCGAAGCCCTATGAGTGTCACGTCTGCAACAAGCCCTTCAGTCAGTCCAATTCGCTCAAAACACACATACGGACGGTGCATTTGCGACTGCCTCCGAACAAAAAGAAGAAAGATACTCAAGATGCAGAGAAAGTTAATACAGAAGTTTTGTAA
Protein Sequence
MFIVITIREIHQTITTGNFFSVHFTHVLIQIFPSDEMSPRIGIDVVMTVWYRAVIFHVNNKIFVDVVLFYNMLQQIVLFFKTFWTLPRATLNSTYIQSLCYICVKRLKHCHKLIEQAVETDKLLRDALRCGVEIDNIECIHTFKLSVSSTINVSLNPVENNIKEEPADIKEELEDNRDTRKKTLSDHIEEDQIDRNISTGPKETYSIDGSRSDEDVKDKSDSDDDVPLKNISLKIHSEMKDNVKNKKCRKFNRDTKVDAQEIILDEEQQLVEMLERAKSLNYLNSPYKCDLCYKGFLDPTAFDKHKEKHDEASSESSRTMAQWTHIPLQALRANLQQADVVPVARARAARRRPRVSRVRGQLRAPARPAHARRQDAPERARRTYYTTHYTYTLHTTRRRPRVSRVRGQLRAPARPAHARRQDAPERARRTYYTTHYTYTLHTTRRRPRVSRVRGQLRAPARPAHARRQDAPERARRTYYTTHYTLHAGDHVCRECGDSFARRHGLLMHVAKTHRSAPDVRTTLHTTHTHYTLHAGDHVCRECGDSFARRHGLLMHVAKTHRSAPDVRTTLHTTHTHYTLHAGDHVCRECGDSFARRHGLLMHVAKTHRSAPDVRTTLHTTHTHYTLHAGDHVCRECGDSFARRHGLLMHVAKTHRSAPDVRTTLHTTHTHYTLHAGDHVCRECGDSFARRHGLLMHVAKTHRSAPDVRTTLHTTHTHYTLHAGDHVCRECGDSFARRHGLLMHVAKTHRSAPDVRTTLHTTHTHYTLHAGDHVCRECGDSFARRHGLLMHVAKTHRSAPDVRTTLHTTHTHYTLHAGDHVCRECGDSFARRHGLLMHVAKTHRSAPDVRTTLHTTHTHYTLHAGDHVCRECGDSFARRHGLLMHVAKTHRSAPDVRTTLHTTHTHYTLHAGDHVCRECGDSFARRHGLLMHVAKTHRSAPDVRTTLHTTHTHYTLHAGDHVCRECGDSFARRHGLLMHVAKTHRSAPDVRTTLHTTHTHYTLHAGDHVCRECGDSFARRHGLLMHVAKTHRSAPDVRTTLHTTHTHYTLHAGDHVCRECGDSFARRHGLLMHVAKTHRSAPDVRTTLHTTHTHYTLHAGDHVCRECGDSFARRHGLLMHVAKTHRSAPDVRTTLHTTHTHYTLHAGDHVCRECGDSFARRHGLLMHVAKTHRSAPDVRTTLHTTHTHYTLHAGDHVCRECGDSFARRHGLLMHVAKTHRSAPDVRTTLHTTHTHYTLHAGDHVCRECGDSFARRHGLLMHVAKTHRSAPDVRTTLHTTHTHYTLHAGDHVCRECGDSFARRHGLLMHVAKTHRSAPDVRTTLHTTHTHYTLHAGDHVCRECGDSFARRHGLLMHVAKTHRSAPDVRTTLHTTHTHYTLHAGDHVCRECGDSFARRHGLLMHVAKTHRSAPDKPKPEPAPDGFCSECNIQFSSSEARTRHILISKRHAIFKDNEPQCSLCGAAVPAAGRAEHARRHVRALAAPRARAAPALLLACAQCEATFPSRAKLQNHVKRIHLGLKYNKNIVCEICGKNCTSNATLRYHQRRHTGEKPFPCDKCAARFISREQLRIHARTHSGERPYGCALCGQRFSQKPALNRHYRVHTGAKPYECHVCNKPFSQSNSLKTHIRTVHLRLPPNKKKKDTQDAEKVNTEVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-