Mcix028163.1
Basic Information
- Insect
- Melitaea cinxia
- Gene Symbol
- -
- Assembly
- GCA_905220565.1
- Location
- HG992225.1:12530754-12537095[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00011 0.012 16.8 2.3 2 23 168 189 167 189 0.96 2 11 4.7e-05 0.005 18.0 1.9 2 23 234 255 233 255 0.97 3 11 1.2e-05 0.0013 19.8 1.5 2 23 263 284 262 284 0.95 4 11 0.00011 0.012 16.9 0.6 1 23 290 312 290 312 0.99 5 11 8.4e-06 0.00089 20.3 2.1 1 23 318 340 318 340 0.97 6 11 2.2e-05 0.0024 19.0 0.9 1 23 345 367 345 367 0.95 7 11 5.7e-06 0.00061 20.9 0.6 1 23 373 395 373 395 0.98 8 11 1.9e-05 0.002 19.2 2.2 1 23 401 423 401 423 0.98 9 11 1.5e-05 0.0016 19.5 5.3 1 23 429 451 429 451 0.98 10 11 8.7e-07 9.3e-05 23.4 0.5 1 23 457 479 457 479 0.98 11 11 5.1e-05 0.0055 17.9 0.5 1 23 485 507 485 507 0.97
Sequence Information
- Coding Sequence
- ATGACAATGGCTATTGAAAAAACTTTGAAATCGTATGAAAATTGCTGTCGTACTTGCTTGAAAGAAGAAACCTCATTTGATATATTTATGGAAACTCTTAATAATACTAACTTAGCTGATATCTTGATATCTTGTACCAGGTTGAATATACAACAGGAGGATTGTCTACCAAAAAAGATGTGCGGCTGTTGCTACAATTGTCTTGTTAGTTTCTATAATTTTCGCGAATTAGCGCTAAAAGTTGATGCGAGATTAAGAGAGAATATTTCAAACAGTTATGGTGTAAACAACAGTGATGATGATAATAAAAGTGATAAATATCCATTTGAAATTATAGTTGAGAACAACATAGATGGTAATTATTGTACATTACAACCTAAGGCTGAAACAGACTATGGTGATATTGAAGGGTCAGATGAAAATAGAAGTTTAGATATATTTACTGATACAAACATATTTCCCGAACCACTAAAATTGAAAAGTACCAAAAAAGAGAAGTTGGAGTGCACTTACTGTAAAAAAACATTTAGAAAGTTATCTAGACTTAAAGATCACTTAGTAAAACATAACATTCTTAAAAATAATAATGATAATACATATAATGAGTCAATAAATCATCAAGAAACTGAAGGAACTTATTCCTTGACTGAGCGTGAGGATGTTAATAATACTATTGTTCAAAGTTTGGTTGAATATGTTTCATGTAGAATTTGTTCTCGTAAGTTCAAGTCAACAAACTCATTGTCGGCACATATGAGAAAGCACGTAGAGAAAGGCAGAGTGATTTCATGTCTGAAATGTGGCAAAGTGTTTAAAAAGATAAGTCATTTGAAACGTCATGAAATTGTTCATGATAGTAGTCGTCTTTATAAATGTTCTGTTTGTCCGAGATCATTTCAAAGCGCTGAAGTGTTTAAGGGTCATATGAATAAACACAATGGAATAAAGCCTCACAATTGCCCATTATGCACAAAATCATTTGCTAATTTGACAACACTGAAGTCGCATATTAAGATGCATAACAAAGATAAGTTTCTGTGTCCTACGTGCGGAAAAAAGTTCGATTCAAGCACAAGCTTAGACCAGCATGTAAAAAGACATCTCGGTTTGAAGCAGTTTGAGTGTACATTATGTCCGAGGAAATTTGTAAGTAAAGGAGAATTAAAATCTCACACCATCACCCACACAGGCGAAAGATGGTACACGTGTAGCCAGTGTGGTGGAACATTTACAAAACAGAGTTCCCTAAGTAAGCACAAGTTACGGCATTTAGGCATCAAACCACATCAGTGTGACACATGTTTAATGAAATTCTCAAGCAAAGATCATTTAAAGCGACACATTCGTATCCATACCGGTGAAAAACCATATAAATGTGACATATGTGAAAGAGCATTTACACAGAGCAACGACCTCGTGAAACATCGACGAGCGCATTTAGGAGAAAAGATTTATAAATGCACAGAATGCAGCGAGAGTTTCCGCCTCAATATTGAACTTCGACAACATATATCAGAACACTATATTTCATCGCAACTTCAAATGTTAGATAAAAATAATAAAGACAATATGGAAGTCAGTAGGGAAGATACAAATAACGACAATATAGTATGCGTTCAGATTGACAGTAATAACACAAATAAATAA
- Protein Sequence
- MTMAIEKTLKSYENCCRTCLKEETSFDIFMETLNNTNLADILISCTRLNIQQEDCLPKKMCGCCYNCLVSFYNFRELALKVDARLRENISNSYGVNNSDDDNKSDKYPFEIIVENNIDGNYCTLQPKAETDYGDIEGSDENRSLDIFTDTNIFPEPLKLKSTKKEKLECTYCKKTFRKLSRLKDHLVKHNILKNNNDNTYNESINHQETEGTYSLTEREDVNNTIVQSLVEYVSCRICSRKFKSTNSLSAHMRKHVEKGRVISCLKCGKVFKKISHLKRHEIVHDSSRLYKCSVCPRSFQSAEVFKGHMNKHNGIKPHNCPLCTKSFANLTTLKSHIKMHNKDKFLCPTCGKKFDSSTSLDQHVKRHLGLKQFECTLCPRKFVSKGELKSHTITHTGERWYTCSQCGGTFTKQSSLSKHKLRHLGIKPHQCDTCLMKFSSKDHLKRHIRIHTGEKPYKCDICERAFTQSNDLVKHRRAHLGEKIYKCTECSESFRLNIELRQHISEHYISSQLQMLDKNNKDNMEVSREDTNNDNIVCVQIDSNNTNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00986492;
- 90% Identity
- -
- 80% Identity
- -