Basic Information

Insect: Melitaea cinxia
Gene Symbol: -
Assembly: GCA_905220565.1
Location: HG992229.1:6756685-6770293[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 5.4e-05 0.0058 17.8 6.6 1 23 193 215 193 215 0.98

2 13 8.7e-07 9.3e-05 23.4 0.4 2 23 228 249 228 249 0.98

3 13 3.7e-05 0.0039 18.3 2.1 2 23 258 279 258 279 0.98

4 13 0.00023 0.024 15.8 2.1 1 23 285 307 285 307 0.98

5 13 0.0018 0.19 13.0 1.8 1 23 313 335 313 335 0.97

6 13 1.2e-05 0.0013 19.8 8.4 2 23 342 363 341 363 0.97

7 13 6e-06 0.00064 20.8 0.7 1 23 369 391 369 391 0.98

8 13 9.2e-06 0.00099 20.2 1.4 1 23 397 419 397 419 0.98

9 13 0.003 0.32 12.3 0.7 1 23 425 447 425 447 0.97

10 13 0.00026 0.028 15.7 1.7 1 23 453 475 453 475 0.97

11 13 0.00057 0.061 14.6 0.3 3 23 483 503 481 503 0.97

12 13 2.5e-06 0.00027 22.0 2.3 1 23 509 531 509 531 0.99

13 13 0.00067 0.072 14.3 1.7 1 23 598 620 598 620 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	5.4e-05	0.0058	17.8	6.6	1	23	193	215	193	215	0.98
2	13	8.7e-07	9.3e-05	23.4	0.4	2	23	228	249	228	249	0.98
3	13	3.7e-05	0.0039	18.3	2.1	2	23	258	279	258	279	0.98
4	13	0.00023	0.024	15.8	2.1	1	23	285	307	285	307	0.98
5	13	0.0018	0.19	13.0	1.8	1	23	313	335	313	335	0.97
6	13	1.2e-05	0.0013	19.8	8.4	2	23	342	363	341	363	0.97
7	13	6e-06	0.00064	20.8	0.7	1	23	369	391	369	391	0.98
8	13	9.2e-06	0.00099	20.2	1.4	1	23	397	419	397	419	0.98
9	13	0.003	0.32	12.3	0.7	1	23	425	447	425	447	0.97
10	13	0.00026	0.028	15.7	1.7	1	23	453	475	453	475	0.97
11	13	0.00057	0.061	14.6	0.3	3	23	483	503	481	503	0.97
12	13	2.5e-06	0.00027	22.0	2.3	1	23	509	531	509	531	0.99
13	13	0.00067	0.072	14.3	1.7	1	23	598	620	598	620	0.98

Sequence Information

Coding Sequence: ATGGCGGCCATTAATAAAACGCAAAAATATAATTTTGAGAAAATATGTCGCGCTTGCTTGCAAATAAAAAAGGACATGCGACCATTATTTGAGCAACTTACAGCTACAATGTTAATGGGCATATCAAAAGTGCAGGTCGCTGTTGGTGATGGACTACCATCACAGCTGTGCTTACAGTGTGTACATCAGATATCCCGATCTCACGCTTTTAAGGATCTCGTGGAGAGAAATGATATCATACTCCGCGAGCAAGCGAAGGCGTTGGCGGAAGAGGCTTTAAAGGAAAACCTTGAGAAAGAGAAGGAAGCGCAATCGGTATACAGAAATATACAGTTCATGGAAATGACGAATCTCAGTACCAATGCAAATCAAATGCTCGAAGGATTCTTTGCAGACAATACAGACACCCAAGCAAATATTACTCAAGAAATTTTACAAAAAGAAGAATTCGATATTGATAAACTGGAGCCTGAAAAAACGGTCCAACCGAAAACAGATGAAGGACTGAACTCTGACGAAGAAAACTACCTTCAAATGGTAGTCTTCCAAGCGACGTCGTCAGTGGCCCCGGGACGCCACGTTTGTAATTTATGCCACAAAGAGTTCAAGCATGCGAGATGGTTGAAGATGCACATGCGATCTCACTCGAATTGGATCAAAGCAAATTGCAAGAAACCTCCCAAATGTCCGATATGTGAAAGAACTTTCAAGGGTCCTGGGATGTTAAAAATGCATATGCGAACACACGAACAACGTCCTCCCAAACAGCCAACGTGTTCCGTTTGTCAACGCACATTCCCGACCAAAACTTTGTTATACCGACACAGACAAACACATTTCGAACAGAAGACACACCAGTGTACCGTCTGCGAAAAACGTTTCTTCAGTGGATACGCACTGAGGTCGCACATGGCTCGACACAGAGGAGAGAGGCCTTACATTTGTGCTATATGTTGCAAGAGTTTTTATAATCCGACTGATTTGAAAGTTCATTTCCGCTTGCACACCGGCGAGAAACCTCTAAAATGTTCAGAATGCAACAAAACGTTCCGACGGCACTCAACCCTGTGTCAACATATGAAGAAACACCGAGGTATCAGGAATCACGTTTGTAACGTGTGCAACAAGGCTTTCTATGAAGTATCCAAACTAAATGCACATATGAGAGTGCATACAGGCGAGCGTCCGTTCGAGTGCCAGTTCTGCGAGCGCAAGTTCGCGCAGCAGTCGGCGCTGATCTACCACCGGCGCACGCACACGGGCGAGAAGCCGTACGCCTGCAAGTCCTGCCCGGCGCGCTTCACCACCTCCTCCGCGCGGAACAACCACGTCTTCACGCACACCGGGAACAAGAAGTTCGTGTGCCCGGTGTGCTTCAAGGGCTGCAGCTCGCGCTCGGAGCTGCGCGTGCACTCCAGCAAGCACACGGGCGAGAAGCTGTTCGGCTGCGCGCTGTGCTCGCAGCGGTTCAGCTCCGCCTCGTACCTGGCCGTGCACCGCCGCCTGCACACCGGCGAGAAGAAGTACCAGTGCGACGTGTGCGGCAAGGGTTTCATAGAGTGCAGTTCCTACAAAAAACATATTAAAACACACAAGCTAGATAAGAAAGAAAATGAAGCAACAACAGACAATGTCGACACGAACTTTGAAACAGTAACGCAAACGGATAAAGAACCCGAATTGAAAAGCAATGACAAGGAAGAGAATATTGAGGCTGAAGAAACACAAACGCAAATCGAAGGACAAATAGCGCAAATAGAAATTCAAGAAGAGAATGGGACGCAAAAGAGGTTTAAATGCGGACTGTGTGTTAAAAGTTATATGTACTTACGCAGTTTGAAGAAACACATGTTGAATCACGTTCAGATGTGTGTGCTTAGTCCCGATAGCTCAGAAAAGATGTATGCATTTAAGACCGGGCAACAATATCCAGTTATATCGTCAGTCCAATCGTTGCAATTACAACAAACACATCAACAAATTAACACGCAGCCGCAGCTACAGGTGCAGACGATTCAAATACATCCCCAACACCAGCCCATACAAATACATGCGGTGGGCGTGCAGCAAGTGCAGCAGGAGCAGCTGCACGTCGCCACCTCGTCCTGCCAGACCATGCTGCCCAACATTCTGCAGGTATTGTGA
Protein Sequence: MAAINKTQKYNFEKICRACLQIKKDMRPLFEQLTATMLMGISKVQVAVGDGLPSQLCLQCVHQISRSHAFKDLVERNDIILREQAKALAEEALKENLEKEKEAQSVYRNIQFMEMTNLSTNANQMLEGFFADNTDTQANITQEILQKEEFDIDKLEPEKTVQPKTDEGLNSDEENYLQMVVFQATSSVAPGRHVCNLCHKEFKHARWLKMHMRSHSNWIKANCKKPPKCPICERTFKGPGMLKMHMRTHEQRPPKQPTCSVCQRTFPTKTLLYRHRQTHFEQKTHQCTVCEKRFFSGYALRSHMARHRGERPYICAICCKSFYNPTDLKVHFRLHTGEKPLKCSECNKTFRRHSTLCQHMKKHRGIRNHVCNVCNKAFYEVSKLNAHMRVHTGERPFECQFCERKFAQQSALIYHRRTHTGEKPYACKSCPARFTTSSARNNHVFTHTGNKKFVCPVCFKGCSSRSELRVHSSKHTGEKLFGCALCSQRFSSASYLAVHRRLHTGEKKYQCDVCGKGFIECSSYKKHIKTHKLDKKENEATTDNVDTNFETVTQTDKEPELKSNDKEENIEAEETQTQIEGQIAQIEIQEENGTQKRFKCGLCVKSYMYLRSLKKHMLNHVQMCVLSPDSSEKMYAFKTGQQYPVISSVQSLQLQQTHQQINTQPQLQVQTIQIHPQHQPIQIHAVGVQQVQQEQLHVATSSCQTMLPNILQVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00642544;
90% Identity: iTF_00986471;
80% Identity: -