Mcix011923.1
Basic Information
- Insect
- Melitaea cinxia
- Gene Symbol
- -
- Assembly
- GCA_905220565.1
- Location
- HG992217.1:4149701-4151833[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.5e-10 2.3e-07 31.2 0.1 2 41 10 49 9 53 0.88
Sequence Information
- Coding Sequence
- ATGCCTCCACGACGGGCTCAGTGGACGCAAGAAAACTTGCGTTCTGCTATGGCAGCTATAGAACGAGGGCAGTTGACGCAGCGTGGTGCAGCAGACCGATATAACATACCTAGACGTACACTGAGGAACCACTTGAAAAGTGGAAATATAATGAAACGTTTAGGACGCAGTTCAATAATAAATGAAGCTCAAGAACGCGATCTTGTCGACAGAATCATAAGGTTTGCAAATATTGGGATGCCACTTACCCCTAAGCTTATTCGCAGACAAGCATTCATCTTTTGCGAAAAATATGAGCTAAAACATAACTTCAACAAAGACGTTGGCCTTGCTGGCAAAGACTGGCTAAAGATGTTTTTGAAGCGACACCCAGAAATTTCAAAAAGAAAGGCACAGTTCATGAATCCAGCCAGGGCACAAAAATTGAACAGACCAATCGTAAGCCAACACTTTGAAGAAGTTAAAAAATTATTTGACGAACTGGATATAGTAACACACCCGGAAAAACTTTACAATGTAGACGAAAAGGGATGCCGGTTGACTGTTCATAATCAACAGACTGTTTTAGCACAAAAAGGAGCTCGACGAGTCCATTTGATTGCGCCAGAGCATGCTGAAAATGTGTCGATCGCTATGTGCGTCAATGCTGTCGGAACCGCTATCCCTCCAATGATAATATTTAAAGGGCAGAGGCAGAAACCTGAATTTAGTGACAATTTACCAGCCGGCAGTTTCGTAAAAATGTCACCAAAAGGAAGCATGACAACCGAATTATTTGTGGAGTTTATAAAACATTTGGCAAAATATAAGACACAAGTTAAAATTTTGTTAGTTTTTGATGGAGCGTCGTCCCATTTAGATTATACGATCGTTGAGGAAGCAGATAGTCATGATATAGTCCTTTATTGCCTTCCAAGTAATACAACTCATGAACTACAGCCTCTTGATAAATCTGTCAACAAGTCCTTTGAACATTATTGGGACCAGGAGGTTTTAAGATACATGTATCAAAATCCTGAAAGACGAATAACCAAAACCAGTTTCAATTCAATTTTCAAAAAGGTCTGGTCACAGTGTTTAACCCATGAAAATATAGTAAACGGTTTTCGAGCTACAGGCTTGTACCCATTCAACCCGGATATATTACCAGACGAAGCATTTGCTCCATCTATCTTAACAGAGCTACCGCCACCAACCCAGCCCAGTGCTATAGTCGGCTCTGATACAGATTACTCGGACAGTGATTATGTCGATCAGCCAGAGGAACAGCTTCAAAACAATGGTGGTTCTCCATCTCTTTTAGAGCAAGTTCCTGAGAAAATTTCTGCTCAATCCACTACAGATCCACATGACTTGATGATTAATACTAACGAAAAATGTAAAGACATCCTTCAATCGTCTGAAAAAATCTTGAACGATGTACAAACAACACCAAAAAAGATACAGTTAACTAGTGAAAATATTGTAACTTCGATGCAGTCGCCAAAACCTTTTACTTCAGGACTTCACAGGGCTTTTATATGTCATCGTCAAGTAATTCATAGTTCAGGATCCGAGTCAGATACTGAAACAAATATCAAACAGCAGATAACACAACCTGCATTAAACAAATCGCCACTGCCCATAGATCATATATATAGTTTTGAAGAAAAAATCGAAGACAGGGACAGTTTTGGTTCTGATGACAACATACCTTTAATTAGCCTTAAAGCTAAGAAATTTACGTCTCCTTTTCAAGAGCTATTGCCAACTCCGAATTATGCTGTGACTAAAAATAAACCTAAAAGAAAAGTTATTAATTATAGAGGCCAACGAGTCACCAAAGACCTATTTAAAGATCAACCAACATTAAAAGAAAATAAGAAAAACGCAACAATACTAAAAAATTACAAAAGAAAACCCAAAGAAACAGAGAAGAAGACTAAAGATAAAAAAACGCAACGATTTAATTGTGATAAAAGAAAAATAAGTAAACTATCGTCAGAAGAATCTTGGTTTTGCTGCGCTTGCAAAGAAAATCGTGTGTCGGATATGAGAAAGTGTCTTAAATGTAACATATGGTACCACGAAGAATGCGTAGGGTTGACCAAAAATGATAAAGAATTATTTTATTGTCAAAACTGTGATGAATAA
- Protein Sequence
- MPPRRAQWTQENLRSAMAAIERGQLTQRGAADRYNIPRRTLRNHLKSGNIMKRLGRSSIINEAQERDLVDRIIRFANIGMPLTPKLIRRQAFIFCEKYELKHNFNKDVGLAGKDWLKMFLKRHPEISKRKAQFMNPARAQKLNRPIVSQHFEEVKKLFDELDIVTHPEKLYNVDEKGCRLTVHNQQTVLAQKGARRVHLIAPEHAENVSIAMCVNAVGTAIPPMIIFKGQRQKPEFSDNLPAGSFVKMSPKGSMTTELFVEFIKHLAKYKTQVKILLVFDGASSHLDYTIVEEADSHDIVLYCLPSNTTHELQPLDKSVNKSFEHYWDQEVLRYMYQNPERRITKTSFNSIFKKVWSQCLTHENIVNGFRATGLYPFNPDILPDEAFAPSILTELPPPTQPSAIVGSDTDYSDSDYVDQPEEQLQNNGGSPSLLEQVPEKISAQSTTDPHDLMINTNEKCKDILQSSEKILNDVQTTPKKIQLTSENIVTSMQSPKPFTSGLHRAFICHRQVIHSSGSESDTETNIKQQITQPALNKSPLPIDHIYSFEEKIEDRDSFGSDDNIPLISLKAKKFTSPFQELLPTPNYAVTKNKPKRKVINYRGQRVTKDLFKDQPTLKENKKNATILKNYKRKPKETEKKTKDKKTQRFNCDKRKISKLSSEESWFCCACKENRVSDMRKCLKCNIWYHEECVGLTKNDKELFYCQNCDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00984999;
- 90% Identity
- -
- 80% Identity
- -