Mcix000014.1
Basic Information
- Insect
- Melitaea cinxia
- Gene Symbol
- -
- Assembly
- GCA_905220565.1
- Location
- HG992236.1:8865935-8873342[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.4 1.6e+03 -0.4 0.0 27 42 97 112 97 113 0.89 2 2 3.9e-10 1.2e-07 32.1 0.0 1 35 160 194 160 198 0.94
Sequence Information
- Coding Sequence
- ATGCCGCATCTGTACACGACGGAAGAATATGCCAACATGCACCTCATTTATGAAGAATGCAGATACAATGCTACTGCTGCGGCGAGACTCTATCGTGAGAGATATCCAAATCGTGAACGTTATCCGGATCATCGAGTTTTTATAAATGTGCACCAGTTACTCTCAGAGGGTCGATTCCCCAACCAAGTGACTAGTGAGGGAAGACCGAATACTTCTAATGAAGACATGGTCTTGCAAGAAGTCAGTTACGACCCGAGTACCTCAGTCCGTTTAATTGAAGCAAGGACGGGGGTGTCAAAAAGTACAGCACACCGAATTTTAAAGAGAAACGAGTTTCACCCGTACCATGTACAACGAGTACAAAGTCTCCTGCCCCAGGTTTTGGTTTGCATTTTTGGTGCAGGTATAAAAGTCGAAACGTCGAATACGAAACTAGGGAAAGACGAATTATTATTGAACAGTAAAACAAGGAAGTACACGGAAGATGATCTTGAGAAGTGTTTAGAAGCTGTTAGAACGAAATCATTGTCGCAGAGCAAGGCTTCCATATTATATAATGTACCACGGAAGACGATCAGTGCGGCGCTTGCTAATCAACAACTATTAGAAGATCCCGTCAAGACGAAGAAACGGAGACGACCTGAACTGCAGAAGCGACAAGAAAACGTCGACTGTATCATAAAATATACCAACGCCACACCCTTCAAAGGATTCCTTCGTACTGGATACGCATGTTTCTTTTGCTCCGTAGAATACGAAAAGGCGATCGATCTTAAGGAACATACTATCTTGGAACATTGCAGTGAGAACAAGCTAAGAGCCACCGTTGTGTCCGACAGAAGTATCAAGTTAGACTTGACAGATCTCGTTTGCAGGATATGTGAAGAGAGCCTAGATACCCTGGAAAATATGCTAGATCACCTAAGACTGGATCACAATAAGAACATCCATACGGACGTCCAAAATCACCTGGTCCCCTTCAAATTCGATAGTGACATTCTAAAATGTGTGGTCTGTTCTGAAGAGTTTGTTAGTTTCAAATTGCTCAACGATCACGTGAACTTGAACCATTATAAGAATTATGCGTGCCATGAATGTGGGAGGGGTTTCATTAACAAAAGATCGTTACAATCGCACAGTTACAGACACGAAACCGGTATATTTACGTGTCAGTTCTGTTCTAAAATATTCACAACGAGGATAAGACGTTTAGACCACGAAAGATCAGTTCATATGACGAATAACAAACGCCATAAGTGCGGTTACTGTGGCGAAAAATTTATAGATATAGCAAAGAAAAAGGAGCACGAAGTGGTAGTCCACAGCGCTGCCAAATTGATATACAAATGCCAGGCGTGCAACAAAATTTACGGTAATCAGAAATCTTTGAGGATCCATATCCGAAGTTACCACCTAATGCTTCGGCCGTTCAAATGTTCCCAATGCGGTATGGAGTTTTATAAGAATATTGAATTGAAGATGCACATGGTGAAGCATACTGGGGAGAGGGATTTTGAATGTGGTGTGTGTAATAAGGCTTTTGGGAGGAAATCGACCTTACGCGAGCATATGCGTATACATACGAATGATAGGAGGTTTAAGTGCGAGTATTGTGGGCAAACGTTTGTGCAGAAGTGTAGCTGGAGGGGACATATGCGAGCGAAGCATGGGGAGGAAGTCTAG
- Protein Sequence
- MPHLYTTEEYANMHLIYEECRYNATAAARLYRERYPNRERYPDHRVFINVHQLLSEGRFPNQVTSEGRPNTSNEDMVLQEVSYDPSTSVRLIEARTGVSKSTAHRILKRNEFHPYHVQRVQSLLPQVLVCIFGAGIKVETSNTKLGKDELLLNSKTRKYTEDDLEKCLEAVRTKSLSQSKASILYNVPRKTISAALANQQLLEDPVKTKKRRRPELQKRQENVDCIIKYTNATPFKGFLRTGYACFFCSVEYEKAIDLKEHTILEHCSENKLRATVVSDRSIKLDLTDLVCRICEESLDTLENMLDHLRLDHNKNIHTDVQNHLVPFKFDSDILKCVVCSEEFVSFKLLNDHVNLNHYKNYACHECGRGFINKRSLQSHSYRHETGIFTCQFCSKIFTTRIRRLDHERSVHMTNNKRHKCGYCGEKFIDIAKKKEHEVVVHSAAKLIYKCQACNKIYGNQKSLRIHIRSYHLMLRPFKCSQCGMEFYKNIELKMHMVKHTGERDFECGVCNKAFGRKSTLREHMRIHTNDRRFKCEYCGQTFVQKCSWRGHMRAKHGEEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00985424;
- 90% Identity
- iTF_00985424;
- 80% Identity
- iTF_00985424;