Mcix002515.1
Basic Information
- Insect
- Melitaea cinxia
- Gene Symbol
- -
- Assembly
- GCA_905220565.1
- Location
- HG992231.1:13101717-13104590[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.2e-15 2.8e-12 46.9 0.0 2 37 30 64 29 70 0.91
Sequence Information
- Coding Sequence
- ATGTATCTAACACAGTTAAAATTAGAAATGGATGTGCATTTGTTACATTTAGCAATATCTTCTTCGAGGCCGATATTGCAGTACCCAGAAGAAAAACTAACTCAAGCTTTAGATGCTATAAGGAATGGCATGTCAATTAGAGAAGCCAGTAGAGCTTACGGCGTACCTCGTGGCACACTTCAAGACAGACTTCATCTGCGAGTTCCAGAGGGTCCCAGAAGAATGGGTCCCGAATCAGTTCTCAATAAACATGAGGAAGTTGAAATAGCAACCTGGCTTAAAGACCTTGCAATTTGTGGATTCCCTATGAAGCCCGACAATCTTTTGAATACAGTTCAACAAATCATGATTGAAGATGGCAGGCCTAATCCATTTGTAAATGGAAAACCAGGAAAGAAATGGATGAGTTCTTTTTTTCGATGGAACGAATCAATTTCAATGAGGACTCCTGAAGCTATTTCAAAGGGAAGGGCGATAATCACGGAAGAGAATATTAGAAAGTGGTTTGAGAAGCTTAAAGATTATTTAGCTAAAGTTCAAGCACTAGACGTTTTAGAAGATCCCAAAAGAATTTTAAACGGTGATGAAACAAGCTTTATGCTTTGTTATGAACCAAATGTAGCAACACTAAACTATTATATTATCTATGACAGTTAG
- Protein Sequence
- MYLTQLKLEMDVHLLHLAISSSRPILQYPEEKLTQALDAIRNGMSIREASRAYGVPRGTLQDRLHLRVPEGPRRMGPESVLNKHEEVEIATWLKDLAICGFPMKPDNLLNTVQQIMIEDGRPNPFVNGKPGKKWMSSFFRWNESISMRTPEAISKGRAIITEENIRKWFEKLKDYLAKVQALDVLEDPKRILNGDETSFMLCYEPNVATLNYYIIYDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -