Basic Information

Insect: Meliscaeva auricollis
Gene Symbol: Sry-delta
Assembly: GCA_948107695.1
Location: OX403616.1:45696754-45697902[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0018 0.17 12.8 1.6 1 23 161 183 161 183 0.98

2 7 0.00034 0.032 15.1 0.3 2 23 188 209 187 209 0.97

3 7 4.8e-05 0.0045 17.7 4.6 2 23 216 237 216 237 0.97

4 7 7.7e-05 0.0072 17.1 1.2 1 23 243 265 243 265 0.98

5 7 2.7e-05 0.0025 18.5 1.4 2 23 273 294 272 294 0.95

6 7 6.1e-08 5.7e-06 26.9 0.4 1 23 301 323 301 323 0.98

7 7 0.52 48 5.1 0.1 1 23 348 371 348 371 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0018	0.17	12.8	1.6	1	23	161	183	161	183	0.98
2	7	0.00034	0.032	15.1	0.3	2	23	188	209	187	209	0.97
3	7	4.8e-05	0.0045	17.7	4.6	2	23	216	237	216	237	0.97
4	7	7.7e-05	0.0072	17.1	1.2	1	23	243	265	243	265	0.98
5	7	2.7e-05	0.0025	18.5	1.4	2	23	273	294	272	294	0.95
6	7	6.1e-08	5.7e-06	26.9	0.4	1	23	301	323	301	323	0.98
7	7	0.52	48	5.1	0.1	1	23	348	371	348	371	0.90

Sequence Information

Coding Sequence: ATGGAATCTAAGGAATTCCAATCAATTTTGTTGAGGTGTATATTGTGCTGCCGCATTAATGATCCCAACAATGGATTTCACGAAATCGATAAAAAACAAATGCCAAAATCTAACAAAACAATCAAATCTGTTCTGGTTCATTTGACCAAATGCATTAAAAAAGATTACAAATTTGATTTCTATTCTTGTGTATGCGGTTTATGCTTCGAAAAACTAGCAAAATACGATGAAATAATGCTGCGACTATTAACTCATCAAAAGGAGCTTGGCCATATGTTGGAAGCAGCAATGCACTCATTTAAAGAGGAACAAAACGTTGATATGGAATCTGTTCACGCTAATGACAATAACTTTGAGCTAGTAACTGAAGAGCTTGACAATGAAACTGAGTCTATAAAAGACGAAGTTGCAAGTGAATTCTTCGTAAAAAGTGATGAAAATGAATCTAATAGCAATGATCAGGAATCTACGAAGCTTTCGTATCAATGCAGCAGCTGTGGAATATTTTTAAAATCGAATAGAGCTTTGCATACTCACCTTAAAGCTCATACAAAGTTAACTTCATGTACAATTTGCGGAGTCGCCTGTAAAGATGATGAATACCTTGAACTACACATGAACATACACGAAGGTAAAACTGAAAACGAATGTCGATATTGCCCCAAAAAATACACCCGCCGTTCCCACGTAATACGACACATGCACATACACTGGGATAAGAAAAAATATCAATGCGAAAAGTGTGGCCTGCGTTTTTCACAAGTTAACCTCCTTTATAATCATAAAATGAACCATGAAGCTGAGGAAGATCCCCTAATTTGTAACGTTTGTCAGCAAACGTTTAAATCAAAGAGAACATTCAAAAATCATATGGTCATACACCAAGAAGATCGCCCAATGTATCCATGTGAAATCTGCGGCAAAGTTTTTACTCAAAAGTATACCATAAGGGCGCATTTGAAAACTCACTCTGAAGGTTATGAAGAAGTTCAAAATTCAATCAGGAAAAAGGCCAAAGCGCACAAAAAAGATTCCAAGCAGTTTCATTGCATCATATGTGACAAAATGTGGGTTTCACAAGAAGCCTTGGATGTTCATATGGCTCAGGAACATGATGTTATAAGTAAAGAAGAAACAAATATTTTATAA
Protein Sequence: MESKEFQSILLRCILCCRINDPNNGFHEIDKKQMPKSNKTIKSVLVHLTKCIKKDYKFDFYSCVCGLCFEKLAKYDEIMLRLLTHQKELGHMLEAAMHSFKEEQNVDMESVHANDNNFELVTEELDNETESIKDEVASEFFVKSDENESNSNDQESTKLSYQCSSCGIFLKSNRALHTHLKAHTKLTSCTICGVACKDDEYLELHMNIHEGKTENECRYCPKKYTRRSHVIRHMHIHWDKKKYQCEKCGLRFSQVNLLYNHKMNHEAEEDPLICNVCQQTFKSKRTFKNHMVIHQEDRPMYPCEICGKVFTQKYTIRAHLKTHSEGYEEVQNSIRKKAKAHKKDSKQFHCIICDKMWVSQEALDVHMAQEHDVISKEETNIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -