Maur006227.1
Basic Information
- Insect
- Meliscaeva auricollis
- Gene Symbol
- -
- Assembly
- GCA_948107695.1
- Location
- OX403618.1:72002864-72009417[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0052 0.48 11.3 3.3 2 23 322 344 321 344 0.94 2 11 6.2e-07 5.8e-05 23.7 0.3 1 23 376 400 376 400 0.94 3 11 1.7e-06 0.00016 22.3 0.3 1 23 410 433 410 433 0.95 4 11 0.21 19 6.3 0.1 3 23 441 461 439 461 0.94 5 11 0.33 31 5.6 3.7 2 23 470 491 469 491 0.97 6 11 5e-05 0.0047 17.7 2.0 1 23 496 519 496 519 0.96 7 11 0.0035 0.33 11.9 0.3 1 17 525 541 525 542 0.90 8 11 0.1 9.4 7.3 0.5 2 23 785 807 784 807 0.94 9 11 0.0029 0.27 12.2 2.0 3 23 812 833 811 833 0.97 10 11 0.0013 0.12 13.2 1.8 1 23 841 863 841 863 0.94 11 11 5.1 4.8e+02 1.9 0.4 1 8 871 878 871 879 0.90
Sequence Information
- Coding Sequence
- ATGGTCTTCGATCGTCATATTATAATGAAGTGTCGTTTGTGCTTAACTAATACCAAAAAAAGTATTCTTATATCAAGTAAAGAAAATATCCAAAAGTACATAACAAAGTTCCTACAATTGGAGCTTTCACCAGAAGATCCAATCTCAAAAATAATTTGTAATTCTTGTTGGGTACAATTGGATAGATTTCAAAAGTTCTGCACTCAAATAGAAGAAGCACAAAGAACTCTTCTGAATCCACCAACTATTGTGGCAGTGCACGAGCGTTCAACTCGTTCAAGTGATGTTGAAAGTATAATCATAGTCAAAGAAGAGGCTCAATCAGAAGAGTTTCAAACAGAAAAGGCTCAATCAGTAGAGACTCAATCCGAAGATGTTAAAACGGAAGAAGATCTATCAGAAGAGGCTGAATCAGATGTTGCTAAATCAGAAGATGTTCAATCAGAAGAAGTTCAATCAAATAACCAAGAAAATTTAATAGGTATAATCATAGTCAAAGAAAAGGCTCAATCAGAAGAGGTTCAATCAGAAAAGGCTCAATCAGAAGATGTTGGAACGGAAGAAGATCTATCAGAAGAGGCTGAATCAGATGTTGCTAAATCAGAAGATGTTCAATCAGAAGAAGTTCAATCAGAAGAAGTTCAATCAGAAGAAGATCGATCGGAAGAGTCCAATGAAAATACTTGTGATAACGACGAAATATTACAATGCTTGGCTGCAGACCTTTTAAAAGTAGAGTTGTTTGTTAAAGAAGAATATAATGAACCGGCAGATACTAATTCTTTTGTTCCATCGAGAATATTAAAGAGAAAAAGACAAGAAAACAAAAATTTGAAAACAAAAACAATTGAAGTAGAAAAAGAAAAAGAGAATGAAAGCTATAGTGTAAGTAGAAAAACACGCAATACCACAAAACAGCAGATCGAAGAACATAATACTATTATATGTAAGAATATGAAACTTAAGTGCGATATTTGCTCGAAGAGTCTTTGTAACTTCAAAGACCTGCAAAAACATTTCAAATTAGTTCACAAATGCCCAGGATATGTAATTTGCTGTAACAAAAAACTCTTAAATCGTTGCCAAACTGTAGATCATATCAACTTCCACAATAATCCTCAGTACTTCAAATGCAACGAGTGCGATAAAACATTCGTTAGTAAAGCTGGATTGCTAAGCCACATGCAAACACTTATTCACACTCCTTTGCCTCCTGATAAATATAATTTCTTTTGTGCCGAATGTGGAAAAGGATTTCCCACTAATTCAACTTTAACCAAACACATTAATCAAATTCATTCCACAGCCAATAACAAAATGTGTGCTATCTGCTTTAAAGTCATTGAGGGGATTGCCAATTTAAAGAGTCATATGGAAGAGCATGAGGTCATTGTCCAGCCGCAAGTGCAATGCACGCATTGTAATATATGGTTGAAAAGTAAAAAAGTTCTTGAACAGCATATGCGCCATCACGATGATACAGCACACTCCTGCAATATTTGTGGCAAGATCTTTTTCTCGAAGATTAGTATTCAACGTCACATGAAATATGTTCATCAATTGTTGCCCAAGTACCATTGTACAATTTGTGACAAAGAATTTAAAAGGCCTACTGCTTTTAATATCATCATCATGAAGTGTCGTTTATGTTTAATTGATACCAATGAAGGTATTTTTATATTTAGTGTAGAAAGTATCCAAATGTACATAAGAAAGTTCCTACAAGTGGAGGTTTCAACAGAAGATTTTATCTCAAAAATAATATGTAGTTCTTGTTGGACACAATTGGATAGCTTTCAAAAGTTTTGCCTTCAAATAGAACAAGCACAAAAAACTCTTCTTAACAATACAGCAACTGATAAGCCGTGCACAAATGTGATTGATAGTTTAGGTCCGGTCAAAGAAGAAGATCAGACTCAAGACTCAAATGGGAATACATCCGATAACGATGATATCCCATACTGCATTGAAGATAATGTTGAATTGCTTAATGAACAAGAACATAGCATTCATGCTTCTGAAACAAAGGAATCAGTTCCAACATGCAGGATTACTCGACAGTCAACACTGAGAAAAACTAACACCAATAGTTTGCCAGGAATTAAAGAAAAGCGAAAAAGAAGTCTAAAAGTTGAAACACCTAAGATTGACTTAGAATCATATAAAAATGAAGAAAACCTGAAAGACATCAACGACTCTAGCACCAATTTAAACACAAAAGAAAGAAGTGGTGAACCCAAAATATGTGACGATGATAATTTGAAAGAAAAGATACATAAATCTGCAAAGTTCTTAAAGTCTATGCAAAAATCAAAAGAATTCGATGAAATAATTCGTAAACATATGAGCTTGTCGTGCGATATCTGTTCAATTCATCTTACTGACTTTGCCGAATTGAAACTCCATTTTCGACTTGTTcacaaatgcaggggATGCTCCGAGTGTGGCAAGGTTTTATCAGATAGAATTTGCCTTCACAAACACATAATATCGTTCCACCCAACTGAAGAACTAACAAAATTTAAATGTGATTTTTGCCCGAAGAAATTTGCCAAACAATATCTGCTGGATCAGCATAGTGTTAAACATGTTCCACAAAATGAATTTACTTTCATTTGCAGTGAATGTGGAAAAGGGTAA
- Protein Sequence
- MVFDRHIIMKCRLCLTNTKKSILISSKENIQKYITKFLQLELSPEDPISKIICNSCWVQLDRFQKFCTQIEEAQRTLLNPPTIVAVHERSTRSSDVESIIIVKEEAQSEEFQTEKAQSVETQSEDVKTEEDLSEEAESDVAKSEDVQSEEVQSNNQENLIGIIIVKEKAQSEEVQSEKAQSEDVGTEEDLSEEAESDVAKSEDVQSEEVQSEEVQSEEDRSEESNENTCDNDEILQCLAADLLKVELFVKEEYNEPADTNSFVPSRILKRKRQENKNLKTKTIEVEKEKENESYSVSRKTRNTTKQQIEEHNTIICKNMKLKCDICSKSLCNFKDLQKHFKLVHKCPGYVICCNKKLLNRCQTVDHINFHNNPQYFKCNECDKTFVSKAGLLSHMQTLIHTPLPPDKYNFFCAECGKGFPTNSTLTKHINQIHSTANNKMCAICFKVIEGIANLKSHMEEHEVIVQPQVQCTHCNIWLKSKKVLEQHMRHHDDTAHSCNICGKIFFSKISIQRHMKYVHQLLPKYHCTICDKEFKRPTAFNIIIMKCRLCLIDTNEGIFIFSVESIQMYIRKFLQVEVSTEDFISKIICSSCWTQLDSFQKFCLQIEQAQKTLLNNTATDKPCTNVIDSLGPVKEEDQTQDSNGNTSDNDDIPYCIEDNVELLNEQEHSIHASETKESVPTCRITRQSTLRKTNTNSLPGIKEKRKRSLKVETPKIDLESYKNEENLKDINDSSTNLNTKERSGEPKICDDDNLKEKIHKSAKFLKSMQKSKEFDEIIRKHMSLSCDICSIHLTDFAELKLHFRLVHKCRGCSECGKVLSDRICLHKHIISFHPTEELTKFKCDFCPKKFAKQYLLDQHSVKHVPQNEFTFICSECGKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -