Maur022363.1
Basic Information
- Insect
- Meliscaeva auricollis
- Gene Symbol
- -
- Assembly
- GCA_948107695.1
- Location
- OX403617.1:79405338-79411461[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4e-05 0.0037 18.0 0.1 2 23 196 217 195 217 0.97 2 11 7.2e-06 0.00068 20.3 1.6 1 23 223 246 223 246 0.98 3 11 6.5e-05 0.0061 17.3 0.0 1 23 289 311 289 311 0.96 4 11 0.017 1.6 9.7 5.1 1 23 318 340 318 340 0.97 5 11 2.2 2e+02 3.1 1.3 1 7 346 352 346 365 0.88 6 11 3.3e-06 0.00031 21.4 0.9 2 23 533 554 532 554 0.97 7 11 0.00012 0.011 16.5 0.4 1 23 560 583 560 583 0.97 8 11 5.6e-05 0.0052 17.5 0.1 1 23 627 649 627 649 0.96 9 11 0.00037 0.035 14.9 3.4 1 23 656 678 656 678 0.98 10 11 0.00058 0.054 14.3 0.6 1 23 684 706 684 706 0.97 11 11 0.77 72 4.5 0.0 1 12 712 723 712 725 0.88
Sequence Information
- Coding Sequence
- ATGGACACATTTCAGCATTTTCACAATTTAAATATCCACTCTTCTTGCAGGACGTGCCTTGAGCATCTTAACGACAAGCATCACGATATATTTGCAATACCAGTTCTGCAACAAAAAATTATTGCATGCACATCATTACCAGTGGAACTAGGAGATGGCTATCCAACGAGTTTATGTGAACAATGTCATACCAAGATTGATGATTTCTTTAACTTTCAACAAATGTGTATCGCCGCAAGAAAACGGTTTCAGGATTATATTAATTCAGAGGAAAAACCATTCGCTATGGAACAGGCTGTTGATCCATTCAATCTGCCAACTGATTCGATGACGTTTAAGAAGGAAACCACAGCAGAGCAAGAAGATAGTGTAACGTATGATACGTGTTTAGAATTCGTCGCAACTGAAATCTCAGATGTGAAAACCCAAGAAGATTCCACAGCAGAAGAAGAATCAGATGATGATGAGCCAATCATAAAATATCGTGTACGTAGTGAAGAAAATTCCCTTAACGACCACGGCCCATTAAGTGAAAATAAAGCCACAAACGTGACTGTAGAACATGCTGTCAAAGTTATTCATCTGGAATGTGAAATCTGCAAGAAAATATTTAAGAAAGCCGAACCTTATATGGCTCATATGCGAGTGCATCAAGGTCTCAAGCCATACCCCTGCGAGTTATGCGTAAAATCGTATTCCCGACGAAGTCACCTCTTAGATCACATACAAACCAAACACGGAGAGAAACCAAAGCAGAAATTACCACGCAACAAACCGCGTTGCGGTAGAGCCAAAAAAAAACAAAACCTTCGTAAAAACATTAAAAGTAGTCACAACAGTACCACTCCCAAACAACCTCAGACTTATATATGTGAAGAGTGTGGAAAAGTCTTAGCAAGTAAGGCCGCACTGAATAACCATCTTTACCTACACACCGGTGCTCAACTTCCACATGAGTGTCCACAATGCCAAAGAAGATGTCTCACAAAAGGCAAACTCAAAGAGCATATGAATAGACATGCCGGCATCAAGAAATACACTTGTCCGCATTGTGGTGCTAAGAAGACGTGCCTTAAGCATCTTAACGACATGCATCACGATATATTTGCAATACCAGTTCTGCAACAAAAAATTATTGCATGCACATCATTACCAGTGGAACTAGGAGATGGCTATCCAACGAGTTTATGTGAACAATGTCATACCAAGATTGATGATTTCTTTAACTTTCAACAATTGTGTATCTCTGCAAGAAAACGGTTTCAAGAATATATTAATTTAGAGGAAAAACCATTCGTTATGGAACAGGCTATTAATCCAATCAATCTACCTACTGATTTGATGATGTTTAAGAAAGAAACCACAGGGGAACAAAAAGATTGTTTCACGTATGAAACGTGTTTAGAATTCGTCGCAACGGAAATTTCAGATGTAAAAACCCAAGAAGATTCCGCGGCAGAAGAAGAATCAGATGATGAGCCAATCATAAAATATCGTATACGTAGTGAAGAAAATTCCCTTAACGACCACAGCGCATTGAGTGCAAGTGAAGCCACAAACGAGAATGTAAAACCTGCTGCCACAGTTATACACCTGGAATGTGAAATCTGCAAGAAAAAATTTAAAAAAGAAGAATCTTATAGGGCTCATATGCGAGTGCATCAAGGTCTCAAGCCATATCCCTGCCAGCTATGTGACAAATCGTATGGCCGACGAGCACGACTAGTATATCACATGAGAAACGTGCACGAGGGGAACGAAGAGAAGAAATTACCCCGCAATAAACCGCGTTGCGAAAAGCCAAAAAAAAAGCAAAATCTTCGTAAAAACATAAAAAGTACTAAGAGAGTTCGCACCACCCCCAAGCCTCCTCAGCCTTATATATGTGAAGAGTGTGGAAAAGTTTTATCAAGTATGTCCGCACTGAAAACCCATCTTTACCTGCACTCCGGTGCGCAGCTTCCACATGAGTGTCCACAATGCCAAAAAAGATTCCTCACAAATAGCAAACTCAAAGACCATTTGAACAGACATGCCGGCATTAAGAAATACACTTGTCCGCATTGTGGTGCTAAGAAATCAAGTCCAACCGAATTAAAAGTCCACATTAACTACCACACGAAAGAGAAGTCATATCCATGTGGGATCTGCGATATGATCTTCAACAGCGCGGCCATACAATTCGACTTTCTTCTCTCACTGCACAAATCAGAATGCCCTTTCTGTTTTCTCTCGTCTCTAAGGCAGCGATTACACACGTAA
- Protein Sequence
- MDTFQHFHNLNIHSSCRTCLEHLNDKHHDIFAIPVLQQKIIACTSLPVELGDGYPTSLCEQCHTKIDDFFNFQQMCIAARKRFQDYINSEEKPFAMEQAVDPFNLPTDSMTFKKETTAEQEDSVTYDTCLEFVATEISDVKTQEDSTAEEESDDDEPIIKYRVRSEENSLNDHGPLSENKATNVTVEHAVKVIHLECEICKKIFKKAEPYMAHMRVHQGLKPYPCELCVKSYSRRSHLLDHIQTKHGEKPKQKLPRNKPRCGRAKKKQNLRKNIKSSHNSTTPKQPQTYICEECGKVLASKAALNNHLYLHTGAQLPHECPQCQRRCLTKGKLKEHMNRHAGIKKYTCPHCGAKKTCLKHLNDMHHDIFAIPVLQQKIIACTSLPVELGDGYPTSLCEQCHTKIDDFFNFQQLCISARKRFQEYINLEEKPFVMEQAINPINLPTDLMMFKKETTGEQKDCFTYETCLEFVATEISDVKTQEDSAAEEESDDEPIIKYRIRSEENSLNDHSALSASEATNENVKPAATVIHLECEICKKKFKKEESYRAHMRVHQGLKPYPCQLCDKSYGRRARLVYHMRNVHEGNEEKKLPRNKPRCEKPKKKQNLRKNIKSTKRVRTTPKPPQPYICEECGKVLSSMSALKTHLYLHSGAQLPHECPQCQKRFLTNSKLKDHLNRHAGIKKYTCPHCGAKKSSPTELKVHINYHTKEKSYPCGICDMIFNSAAIQFDFLLSLHKSECPFCFLSSLRQRLHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -