Basic Information

Insect: Meliscaeva auricollis
Gene Symbol: -
Assembly: GCA_948107695.1
Location: OX403616.1:4282241-4286109[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.71 66 4.6 0.4 1 12 16 27 16 29 0.91

2 14 4.2 4e+02 2.2 0.1 1 13 348 360 348 372 0.79

3 14 0.0041 0.38 11.7 0.4 1 23 377 400 377 400 0.94

4 14 3.3 3.1e+02 2.5 3.8 1 23 409 431 409 431 0.97

5 14 2.8e-05 0.0026 18.5 3.2 1 23 438 460 438 460 0.98

6 14 6.4e-06 0.0006 20.5 0.8 1 23 466 488 466 488 0.99

7 14 0.00016 0.015 16.1 1.1 1 23 495 517 495 517 0.97

8 14 0.00013 0.012 16.4 0.4 1 23 523 545 523 545 0.96

9 14 8.3e-05 0.0078 17.0 0.3 1 23 551 573 551 573 0.98

10 14 6.3e-05 0.0059 17.4 0.8 1 23 579 602 579 602 0.95

11 14 5.3e-05 0.005 17.6 3.6 1 23 608 631 608 631 0.97

12 14 1.7e-05 0.0016 19.2 3.5 1 23 637 659 637 659 0.98

13 14 0.00038 0.036 14.9 0.4 1 23 665 687 665 687 0.96

14 14 0.0011 0.1 13.4 0.9 1 22 693 714 693 717 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.71	66	4.6	0.4	1	12	16	27	16	29	0.91
2	14	4.2	4e+02	2.2	0.1	1	13	348	360	348	372	0.79
3	14	0.0041	0.38	11.7	0.4	1	23	377	400	377	400	0.94
4	14	3.3	3.1e+02	2.5	3.8	1	23	409	431	409	431	0.97
5	14	2.8e-05	0.0026	18.5	3.2	1	23	438	460	438	460	0.98
6	14	6.4e-06	0.0006	20.5	0.8	1	23	466	488	466	488	0.99
7	14	0.00016	0.015	16.1	1.1	1	23	495	517	495	517	0.97
8	14	0.00013	0.012	16.4	0.4	1	23	523	545	523	545	0.96
9	14	8.3e-05	0.0078	17.0	0.3	1	23	551	573	551	573	0.98
10	14	6.3e-05	0.0059	17.4	0.8	1	23	579	602	579	602	0.95
11	14	5.3e-05	0.005	17.6	3.6	1	23	608	631	608	631	0.97
12	14	1.7e-05	0.0016	19.2	3.5	1	23	637	659	637	659	0.98
13	14	0.00038	0.036	14.9	0.4	1	23	665	687	665	687	0.96
14	14	0.0011	0.1	13.4	0.9	1	22	693	714	693	717	0.92

Sequence Information

Coding Sequence: ATGACTGAAATCATCGATCGAATAGCGCACTTCACCACAGAATACTTTAAATGTTACCTTTGTAATAAAATCTTTGCTGACGGCGACGAACCATGGCATATGTTTGAGAAAAGACTGGCAGAAAATGACCAAAATGATTGTCCTTTAGCTGCGATTCTATCGTCAGCTCTGGGCAAAGATTTGGACCAGAAAAGTGTCCATTCCAAGTTAATTTGTGATGAATGCAATGTCATCCTTTTGGAATATGAACGAATTGAAAAAAGATTCTATCATTTCCGATTGAAGATTCTCACCGATTACAACAACACCGCCAAAGAGAATAACCTCGAACCGATTTGGTTCGAAATCGGAGATATCGGTGATGAAACTAGTGTTCAAATGATGCAATTGCAAGAGCAGGAACAGCAACAGCAGCAGGAGCAGGAGGAAGAAGAGAATGAGACAATAAACCTTGATGAAGATGATACTTCCATACTCCAGCCTGGCATGAATGTGAAACTAGAAAACGATGAGATAATAACTCATATTCCAATTTTGGAAAATCATCATCAGGAAGTTGCAAGTTTGATTGTTGAAGATAAGGATGTGGTGGTGGAGGAATATGAGGAGACTGAGGACCAAGATGAACGCGATTTGGCTCGGCAATTGGATTCGGCACAAACAATTTTAATTGAAAATAATGGAGAGCAGTTAGTTAGCAGTGGCACAACATCGATGATGACATTTGAGGATAAGAGTTTGCATGTGATTACTGAAGAAATTCCCTATGAACAAATAATCGAACAAACTTCTGTTATAAGCTATGACAATGATGATGATGTCCATGAGTCAGCAATTGATTACAATAGCAGCAATGATGACAATCTACCAATCGTCCCAGATGACATACCTATCGCTACGTCAAAGCAACAAAAACGCACAAATCGTGCCATGAAACGTGAACGCGCCcaacagcaacaacaacaacaacactcaaccgatcagcaacagcaacaacaacaacaacaattatgcttggaatttgaaTTCAATGGAATTATGTATGTGTGCCCATTGTGCCCGGAACGATCTGAACACGAACCAATGTTGTTTGCCAGTCATTTGAAAAATCTACACAATTACAAATTCTATGTGTGTGACATTTGCTACAAGGGATTCAACAAACGCAACGAGGTCAGCGATCACATGGACGAATTCCATGGCAGTGGAACGGAAGAAGGTGAATTCCATTGTGAGAATTGCATGAGGGTCTTTTTGAATCTGCGGCAATTCCGAATTCATAAGCGGCTGCATTATAGTTccaccaagcagcatgagtgtccggagtgccacaagaaatacagttcgaagaatctattggacgaacacatgaacatgcatacgggcaagcgaccgtacaagtgtgcgtcgtgcagcaaggatttcgcctccaaatacacgctgcaggctcatatgaaaattcataccaaacgtccgaggccgtacaattgtgatgagtgcgacaagtcattcttgaatcagcagaatctggtacagcacaagaaactgcatacgggactgaagacgttcatctgtgaggtgtgtcagaaggcctttgggacgcagcacaatttggatgtccataaaattgttcattcgggcaataagccgtttatttgccgaacatgcggcaagggatttgcccgccgagcagagattagagatcatgagaggacgcacaccggcgagaggccattcaagtgtgacctatgcacattggcctttgcccagagatccaacttaatgacccacaaaaaggccactcatttgaatgacaagaagcacaagtgcgacctgtgtgatagatcatttaagcgacgacgattgctggagtatcatacaaaatcagctcacacgggggagaggccgcataaatgcgaagtgtgcagtgccacatttgtctatcccgaacactttaagaagcacatgcgaatccatagcggagtgaagccatatgcgtgtgaagtgtgcggcaaactattcaatagccgcgacaatcgcaacgcccatcgattcattcacagcgagaagaaaccctacgagtgcatggaatgtggaatgggATTTATGAGGAAGCCATTGTTGCTCTCGCATATGAAACACACAAAGCATGTGAATGACACAATAATTGTGAATCAACCCCAGATAAGCCACAAAGGAGTGTTGGAGGTTTATAAAGAGACGACCGATGATGAAGAGGAGGAAGAGGAGGACGACGACGAGTTATTGGTGGAAAGTGAACAGCAGCAGATGCAGGTTGAAGCAGATGGTGATGGAGATGGAGAGGACGAAGAAGAAGATGAAGCCGCCGCCGGTTATGATGAAGTTGTGGCATCGGATACGATTCTTGTTGAAGATGGCGATGGACAGTATATCAAGGACGAAGATGGCGAGGTCAAATATTTGCAATTTGCTGAAATGGATAAAGATGGCCAGGCGACATTTACTTGGGTCGACATTGGCGGAGGAAGCAAAGAGGATGAAAATTAA
Protein Sequence: MTEIIDRIAHFTTEYFKCYLCNKIFADGDEPWHMFEKRLAENDQNDCPLAAILSSALGKDLDQKSVHSKLICDECNVILLEYERIEKRFYHFRLKILTDYNNTAKENNLEPIWFEIGDIGDETSVQMMQLQEQEQQQQQEQEEEENETINLDEDDTSILQPGMNVKLENDEIITHIPILENHHQEVASLIVEDKDVVVEEYEETEDQDERDLARQLDSAQTILIENNGEQLVSSGTTSMMTFEDKSLHVITEEIPYEQIIEQTSVISYDNDDDVHESAIDYNSSNDDNLPIVPDDIPIATSKQQKRTNRAMKRERAQQQQQQQHSTDQQQQQQQQQLCLEFEFNGIMYVCPLCPERSEHEPMLFASHLKNLHNYKFYVCDICYKGFNKRNEVSDHMDEFHGSGTEEGEFHCENCMRVFLNLRQFRIHKRLHYSSTKQHECPECHKKYSSKNLLDEHMNMHTGKRPYKCASCSKDFASKYTLQAHMKIHTKRPRPYNCDECDKSFLNQQNLVQHKKLHTGLKTFICEVCQKAFGTQHNLDVHKIVHSGNKPFICRTCGKGFARRAEIRDHERTHTGERPFKCDLCTLAFAQRSNLMTHKKATHLNDKKHKCDLCDRSFKRRRLLEYHTKSAHTGERPHKCEVCSATFVYPEHFKKHMRIHSGVKPYACEVCGKLFNSRDNRNAHRFIHSEKKPYECMECGMGFMRKPLLLSHMKHTKHVNDTIIVNQPQISHKGVLEVYKETTDDEEEEEEDDDELLVESEQQQMQVEADGDGDGEDEEEDEAAAGYDEVVASDTILVEDGDGQYIKDEDGEVKYLQFAEMDKDGQATFTWVDIGGGSKEDEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -