Basic Information

Insect: Meliscaeva auricollis
Gene Symbol: su(Hw)
Assembly: GCA_948107695.1
Location: OX403616.1:89142135-89148011[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00038 0.035 14.9 0.8 1 20 150 169 150 171 0.94

2 12 1.4e-05 0.0014 19.4 0.3 3 23 222 243 220 243 0.92

3 12 0.041 3.9 8.5 0.0 1 23 249 271 249 271 0.96

4 12 2.1e-06 0.0002 22.0 2.1 1 21 278 298 278 299 0.95

5 12 6.6e-07 6.2e-05 23.6 0.4 3 23 312 332 310 332 0.97

6 12 0.00025 0.024 15.5 5.8 1 23 344 366 344 366 0.98

7 12 3.7e-05 0.0034 18.1 0.7 1 23 372 394 372 394 0.96

8 12 8.7e-05 0.0081 16.9 0.5 1 23 400 422 400 422 0.99

9 12 2e-07 1.9e-05 25.2 2.1 1 23 428 450 428 450 0.98

10 12 1.1e-05 0.0011 19.7 1.5 1 23 454 476 454 476 0.96

11 12 0.0041 0.38 11.7 0.5 1 21 498 518 498 522 0.89

12 12 0.66 62 4.7 1.0 2 23 529 551 528 551 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00038	0.035	14.9	0.8	1	20	150	169	150	171	0.94
2	12	1.4e-05	0.0014	19.4	0.3	3	23	222	243	220	243	0.92
3	12	0.041	3.9	8.5	0.0	1	23	249	271	249	271	0.96
4	12	2.1e-06	0.0002	22.0	2.1	1	21	278	298	278	299	0.95
5	12	6.6e-07	6.2e-05	23.6	0.4	3	23	312	332	310	332	0.97
6	12	0.00025	0.024	15.5	5.8	1	23	344	366	344	366	0.98
7	12	3.7e-05	0.0034	18.1	0.7	1	23	372	394	372	394	0.96
8	12	8.7e-05	0.0081	16.9	0.5	1	23	400	422	400	422	0.99
9	12	2e-07	1.9e-05	25.2	2.1	1	23	428	450	428	450	0.98
10	12	1.1e-05	0.0011	19.7	1.5	1	23	454	476	454	476	0.96
11	12	0.0041	0.38	11.7	0.5	1	21	498	518	498	522	0.89
12	12	0.66	62	4.7	1.0	2	23	529	551	528	551	0.91

Sequence Information

Coding Sequence: ATGAAGGGTCGATTGGTTCACACGATGAACACCTCGCATATTATAGTCGACTTCAAATATGCGAAAATGATCGCAAAGTCGGCCAGATCAACCAGAAGCAGTAAAATCTCAAAAGTACCACCAGCTAAAACACAAACAACTCTGACAAAATTTCTTCTAAACAGCAAACAACCAATCCGAACTGCTGAATTAGAATTAGACGATGTAGAATTTGTGCGCACAGAAGCAGATGCGCCAACCGAACATTATGTCTTAACTGAGTTCAAAAATGACGAACAGGGGGAAAATGAAATTAACTTCATCCTTTCGGATAATTTGAATGTCGACCAAGAAGAGACGTTGGCATGCACCGAAGAAATTCAAGAAATTGAAGAAGAGGTGGATGAAAACGATCTGGATGAAGATGACGTAGATGCAATGGTTGTAAGGACACAAGAAATTGTCGAACATATTTGCGGGAAATGTTATAAGACATTTCGAACAGTTAAGGCATTGAAGCGACACATTGCCTTTTGTGTTTTCACCTCCACATTAGTATTTCGCAAAGAAGAGATGCTTAAAAATATTGACAAAATAGAAAAGGAAGCCCTGCACATGCACAAAAAGGATATCTGCTTTTGTTGTGGCGATAGCTACGACACATGTCATGGTGGTCATATTAATTGTGCTGATTGTCCTAAAACTTTCAAAACTCAATTAAGTCTTGAACGTCACATGTTTCTTATTCATTCGGAGAACAGCGACTTTCCCTGTCAGATATGCAATGGGCGAATTCGTACGGCAGCTTTGTTAGAACTTCAcattgaacagcatatgacacgtggcaaaccgtttgcttgcagaaaatgtggcaaagactttacgcgggcatatcatttaaaacgacatatgaactttgcaacgtgtggtggaaaaaaagccgaaactatggcatgtaaggtctgtggaaaagactttgcacgattggataatttacgatcgcatttgaaaactcatTTGGGTCAAGGACCATCAGCAAAGAAGACGGATTATATGTGTCCGTGTTGCAAGAAATGCTTCTACAGTTTGTCAACATTGAACATTcatattcgaacccacactggagagcgaccttttgattgtgatctttgtgataaaaatttcccatcattggttgctttaaagaaacacaggcggtttcacactggtgagaaaccttacacttgttcagtgtgcaaagctaactttgctgtgaaagaagttctcaacagacatatgaaacgtcacaccggagaaaaaccacatagctgtgatgaatgcggaaaacgttttatacaagccacccaattaaaaaatcatcttcgaacgcatTTAAGGCCATTTGAATGCACCGAATGCCCAGAGAAATTTAAAACTAAGAACCAATTGGAAAAACATTCCAAAGAACATTTCGTTAAAAACAAAATTGCAATAAGAACTCTGAAAGATCCTAGAACAAGACAATTTAAACAATACAATTGCGAAGATTGTAATATTAACTTCCGGACAGTGGCGTCGTTTTTGCGTCATGAGTCATCTAAAGAGCATACACAAAACGCTAAAAAGAAATGCCAAATATGCGGTTTGGAACTCAAAAATACAAAGGCCCTCCAATTTCATACCCTCAAGTACCATGAAGAAACATCAATGGACAACAATTCATCACCAAGTAATTTGGAAACGATCAAGACAGAAAATGAAGAGAATATTATTCAAGAATATTTCCTTGAGGCACTTCCTGAAATACCAGAGGAAGAACTTCCTGAAAAATCATTGGTTCAGAGCTACACCATCCTAGCAAAGAGCAATGAAGTTTCTCCAGAATGTGGGAAACCTTTACAAGCAATGACAAAATCTAAGCTTAGATCCGAATTAAGAAAGTCTATGGCGGAATGTTTACGTGAACCAACAACTACAAAGAACATCAAGGCAGTTGTAAACGAAGAAGAGATACAAATAACTGAGAATGTTGAAAAGTTACTCGATATGCTGGTGGATGCTGAGACACTCACTAAGTTTGGCTGGCCCTCGAATTCTGTTGAAAAGGTCCTTTGTAAAGTTATTGAAAACTGTGGACACAACATGAAGCAAACAATAACTACCGATGATTACTGCACCCGGATGAGGGAATATGTAAAATTACTCCTTACTGTTGTTATACAAAATGACACCATCAAGGAACTGTTGAATAATTATCCAATCGATGAGGTTATAGAGTTTGTTCTTTCAAATGAGAATGATAATGAAATTGATGATTAG
Protein Sequence: MKGRLVHTMNTSHIIVDFKYAKMIAKSARSTRSSKISKVPPAKTQTTLTKFLLNSKQPIRTAELELDDVEFVRTEADAPTEHYVLTEFKNDEQGENEINFILSDNLNVDQEETLACTEEIQEIEEEVDENDLDEDDVDAMVVRTQEIVEHICGKCYKTFRTVKALKRHIAFCVFTSTLVFRKEEMLKNIDKIEKEALHMHKKDICFCCGDSYDTCHGGHINCADCPKTFKTQLSLERHMFLIHSENSDFPCQICNGRIRTAALLELHIEQHMTRGKPFACRKCGKDFTRAYHLKRHMNFATCGGKKAETMACKVCGKDFARLDNLRSHLKTHLGQGPSAKKTDYMCPCCKKCFYSLSTLNIHIRTHTGERPFDCDLCDKNFPSLVALKKHRRFHTGEKPYTCSVCKANFAVKEVLNRHMKRHTGEKPHSCDECGKRFIQATQLKNHLRTHLRPFECTECPEKFKTKNQLEKHSKEHFVKNKIAIRTLKDPRTRQFKQYNCEDCNINFRTVASFLRHESSKEHTQNAKKKCQICGLELKNTKALQFHTLKYHEETSMDNNSSPSNLETIKTENEENIIQEYFLEALPEIPEEELPEKSLVQSYTILAKSNEVSPECGKPLQAMTKSKLRSELRKSMAECLREPTTTKNIKAVVNEEEIQITENVEKLLDMLVDAETLTKFGWPSNSVEKVLCKVIENCGHNMKQTITTDDYCTRMREYVKLLLTVVIQNDTIKELLNNYPIDEVIEFVLSNENDNEIDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00665910;
90% Identity: -
80% Identity: -