Basic Information

Insect: Meliscaeva auricollis
Gene Symbol: -
Assembly: GCA_948107695.1
Location: OX403616.1:25427348-25433195[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00012 0.011 16.5 1.8 2 23 112 133 111 133 0.98

2 16 3.8e-06 0.00036 21.2 0.8 1 23 139 161 139 161 0.97

3 16 4.4e-05 0.0041 17.9 1.2 1 23 167 189 167 189 0.98

4 16 0.00013 0.012 16.4 1.2 1 23 195 217 195 217 0.96

5 16 0.0046 0.43 11.5 4.2 3 23 225 245 223 245 0.98

6 16 6e-05 0.0056 17.4 3.2 1 23 251 273 251 273 0.99

7 16 0.31 29 5.8 1.7 1 21 376 396 376 397 0.95

8 16 1.9e-05 0.0018 19.0 0.2 1 23 405 429 405 429 0.98

9 16 0.0011 0.11 13.4 0.1 2 23 431 453 430 453 0.89

10 16 0.00043 0.04 14.8 1.0 1 23 459 483 459 483 0.96

11 16 7e-06 0.00066 20.4 6.3 1 23 489 511 489 511 0.99

12 16 5.6e-07 5.2e-05 23.8 0.8 1 23 517 539 517 539 0.99

13 16 3.9e-05 0.0037 18.0 0.2 1 23 545 567 545 567 0.98

14 16 0.0052 0.49 11.3 0.2 1 23 573 595 573 595 0.97

15 16 0.0034 0.32 11.9 5.8 1 23 601 623 601 623 0.99

16 16 1.2e-05 0.0011 19.7 1.0 3 23 631 651 629 651 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00012	0.011	16.5	1.8	2	23	112	133	111	133	0.98
2	16	3.8e-06	0.00036	21.2	0.8	1	23	139	161	139	161	0.97
3	16	4.4e-05	0.0041	17.9	1.2	1	23	167	189	167	189	0.98
4	16	0.00013	0.012	16.4	1.2	1	23	195	217	195	217	0.96
5	16	0.0046	0.43	11.5	4.2	3	23	225	245	223	245	0.98
6	16	6e-05	0.0056	17.4	3.2	1	23	251	273	251	273	0.99
7	16	0.31	29	5.8	1.7	1	21	376	396	376	397	0.95
8	16	1.9e-05	0.0018	19.0	0.2	1	23	405	429	405	429	0.98
9	16	0.0011	0.11	13.4	0.1	2	23	431	453	430	453	0.89
10	16	0.00043	0.04	14.8	1.0	1	23	459	483	459	483	0.96
11	16	7e-06	0.00066	20.4	6.3	1	23	489	511	489	511	0.99
12	16	5.6e-07	5.2e-05	23.8	0.8	1	23	517	539	517	539	0.99
13	16	3.9e-05	0.0037	18.0	0.2	1	23	545	567	545	567	0.98
14	16	0.0052	0.49	11.3	0.2	1	23	573	595	573	595	0.97
15	16	0.0034	0.32	11.9	5.8	1	23	601	623	601	623	0.99
16	16	1.2e-05	0.0011	19.7	1.0	3	23	631	651	629	651	0.97

Sequence Information

Coding Sequence: ATGGCAATGGAAATAAAGACCGAAAATGAAGATCCAGCGCCAAGTGGAATAGAATTCGAATCTATTCTAGGACCTGTGTGTGAACAAAATCAGAATGATTTATTCAATAAATATTCTCAAGCAAATAATGCTAATGAAAATAATCCAATACATTCCATTGAAGAAAGATCTCAAGCAGTAACAGATACAGAACTACAATCAAAAACTTCTTATCAAGTAAAAACTGAACATGTCTCTACTGATGGCACTGGAGTGCAATTATTTTCGATTTTGGAAATCGAAGAGACAAATCTCATGAAAGAACCCATCGAAAATCAAGTCTTAAAAAAAAACCAATGTCGGGTTTGTCAAAAAATTTTTCGAGGTAAATGTCTACTTGAAATACACATGCGCGTTCACACTGGAGAAAAACCTTTTAACTGCACGCTATGCGGAAAAGACTTCCGACAAAAAGCTGCTCTCAAGACCCATTTATTAAATCACACGAAAATCAAACCGTTTAAGTGTAGTCAATGCGAACGAGCATTTGTTACCCAAAAAGATCTTTCAACTCACTCTTTGACTCATTCATGCGAAAGACCATTCAATTGTGATATCTGCAATAGAACGTTTATATCCGAGAAATCATTAAAGTACCACCGAGCCCAGCACACGAGAGGATATCCATTTGGTTGCGATGTTTGTGAGATGAGATTTTGCTATATGCATCTTCTCCGACGACATCAGCTAACTCACACCGGAGAGAAGCCCTACAAATGCAAATATTGTGGTAGAGGATTTCGACAAAGACACGAATCTGTTGTTCATATGCAAACACATCCAGAAGTCAATTCAGACCAAGATAAGCCTTCACTCCAACAGGTGCTGAAACTGATTAATTCTTTGCCCAGAGAAGGCGAGATTTGTGATGCCAAAGAATCATCGCTAACAATCGCAAACGAAATCAATGAAATTCAACCAACAGAATCTTTATCTAGTCCTTGCCTGACAAATCCGGTCTCACCTAATAAAGAAAAATCTCAACTTTCTACTGAAATTGAAAATCCTGTAAATAACGAAAACATTTCAGATATTTCCGAAATTAATGTTAAACAAGAACCAATGGAGATGGAAAGTACAAAAAAATTCGTTTGCAAATGCTGTGGAGCACGTTTTGCTTTGCAGAATACTTTAAGTCATCATGTGCGACAAAATATGTGCTCACAAAAGCATTTCACATGTCCAAATTCAAAATGTAAAAGGGTATTCGCCTCTCAAGAGAGTCTAGACGCACATATCCTAACTCATACCTACTGTGATTTATGCGGTCAATCCTTTAGTAATAGTGATGAAATCGAAATACATAAAGCAGAACAACATAATTTGAAAGTTAAACATCCGTGTCCTCATCCTAATTGCAATAAAGCTTTCTATAAAGGAGGTCAACTCGAAAAACACATTGAAACCCACAGCATCAAAAAGGAATTCCAGTGCACGCTTTGTGATAAAAGCTTCCATCGAAAATTCTATCTCACACAACACATGAATCGTCATACCAAAACACGACCCTTCCAATGCGAACAATGTTCAAAGGCATTCTATAGCTCTGGTGAACTTCAAAGACATATTATGCGAcacactggcgatcgtccatttccatgtgacatgtgcgataaaacatatcctttagctagcgaattaagagttcacaaacaatctcactcaggtgaacgaccttttgcttgtgaattttgtccgatgcgatttggatttgcaaacgttctgagaaaacacctaataactcacaccggtgaaagatcattcaaatgtactacatgtggtcgaggatttgttcacaaacaaaattgcgatgatcacatgaaaacgcattcgggtgaaaaggaatacggttgtgaaatttgcgagacaagatactatacgaaagattccttgcgaaaacacatgagaaatcacaAAAAGATTGCAGCTGAAGAAGAAAGTGTTAATGAAAGTACAACTGGACAAAAAAAGGAACTAATTGTGTTCAATTTCAATGGCATTGCTGCTTAA
Protein Sequence: MAMEIKTENEDPAPSGIEFESILGPVCEQNQNDLFNKYSQANNANENNPIHSIEERSQAVTDTELQSKTSYQVKTEHVSTDGTGVQLFSILEIEETNLMKEPIENQVLKKNQCRVCQKIFRGKCLLEIHMRVHTGEKPFNCTLCGKDFRQKAALKTHLLNHTKIKPFKCSQCERAFVTQKDLSTHSLTHSCERPFNCDICNRTFISEKSLKYHRAQHTRGYPFGCDVCEMRFCYMHLLRRHQLTHTGEKPYKCKYCGRGFRQRHESVVHMQTHPEVNSDQDKPSLQQVLKLINSLPREGEICDAKESSLTIANEINEIQPTESLSSPCLTNPVSPNKEKSQLSTEIENPVNNENISDISEINVKQEPMEMESTKKFVCKCCGARFALQNTLSHHVRQNMCSQKHFTCPNSKCKRVFASQESLDAHILTHTYCDLCGQSFSNSDEIEIHKAEQHNLKVKHPCPHPNCNKAFYKGGQLEKHIETHSIKKEFQCTLCDKSFHRKFYLTQHMNRHTKTRPFQCEQCSKAFYSSGELQRHIMRHTGDRPFPCDMCDKTYPLASELRVHKQSHSGERPFACEFCPMRFGFANVLRKHLITHTGERSFKCTTCGRGFVHKQNCDDHMKTHSGEKEYGCEICETRYYTKDSLRKHMRNHKKIAAEEESVNESTTGQKKELIVFNFNGIAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -