Basic Information

Insect: Melipona quadrifasciata
Gene Symbol: Prdm15
Assembly: GCA_001276565.1
Location: KQ435765.1:53406-56094[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.3e-05 0.0011 19.0 4.1 1 23 256 278 256 278 0.98

2 10 0.00034 0.029 14.5 2.9 1 23 283 305 283 305 0.98

3 10 0.00052 0.045 13.9 1.4 3 23 316 336 315 336 0.98

4 10 7.1e-07 6e-05 22.9 1.0 1 23 451 474 451 474 0.96

5 10 1.5e-06 0.00012 21.9 0.8 1 23 507 529 507 529 0.99

6 10 0.00011 0.0091 16.1 4.0 1 23 543 565 543 565 0.96

7 10 0.0001 0.0086 16.2 4.7 1 23 571 593 571 593 0.98

8 10 0.0009 0.076 13.2 3.2 1 23 599 621 599 621 0.98

9 10 6.3e-05 0.0053 16.8 6.6 1 23 627 649 627 649 0.97

10 10 0.00014 0.012 15.7 0.3 1 21 655 675 655 676 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.3e-05	0.0011	19.0	4.1	1	23	256	278	256	278	0.98
2	10	0.00034	0.029	14.5	2.9	1	23	283	305	283	305	0.98
3	10	0.00052	0.045	13.9	1.4	3	23	316	336	315	336	0.98
4	10	7.1e-07	6e-05	22.9	1.0	1	23	451	474	451	474	0.96
5	10	1.5e-06	0.00012	21.9	0.8	1	23	507	529	507	529	0.99
6	10	0.00011	0.0091	16.1	4.0	1	23	543	565	543	565	0.96
7	10	0.0001	0.0086	16.2	4.7	1	23	571	593	571	593	0.98
8	10	0.0009	0.076	13.2	3.2	1	23	599	621	599	621	0.98
9	10	6.3e-05	0.0053	16.8	6.6	1	23	627	649	627	649	0.97
10	10	0.00014	0.012	15.7	0.3	1	21	655	675	655	676	0.93

Sequence Information

Coding Sequence: ATGGAAGTCGAAAATAAAgcaacaattttatcaaatgacTGTGGCAATGTTTGCCGCGTTTGTCTTACAACAAATCAAAATAACCAATATATTTTCGATGGTAAGCGTATCGTTTTCGATGGTAATTTGATTAACGAAGATATAATTGATTTGACCGAAAAACTTCGTTTGTGCACCGGTGTGGAGGTATTGGAGAATGATGGTTTACCTTCCACTATTTGcacaaaatgtatattaaaaatcaatgatGCTCATGAATTAAGAAAGCAATGTCAACAATCTGATATCCGATTAAGAGAATTGTATGGtaaagtggaaaaaatttataacattaatttatgtaaGACTACAAAAgaTCAATATTGTCAGACGGATTATTCACTTACTTCtgatttaatcaaaattgaaaacaattcaTTTTCTGCAATGGGTTATAATTCCTATCCAACGGTAATTCTTAATTCTGATACTAAAGACATAAAAGATCATGAAGTAATTAATGAATCAAAGTATacagaagagaaagaatcCAATAGTAaccaaaataaacaaaatgcTTATATCAAATGTAAGCAAgcagaatatgaaaaaaatgttacaggGAAGGAAGTTTATCGAACAAGAAGAATGACAATGTTTAAAAGAGTAACatctatagaaaatttaaaaaatcacaaagaacgacaaaggaaatatataaaaaagaatacagCCATTAAATGGGATAATGCAGCAGATATAAACAAAGTAGATTCTCAAAGTTCTTATAATTGTCCAAAATGTACTAGGTGTTATTCCACCAAAAGGTCTTTGGATAGACATATATTAACTcatgacgaaaaaaaatttacatgtgataaatgtaacaaatatttttttcaacttgataaattaatacagCATACTAAACTACATATTGTTAAGGAAAAACCTAAACCagtattatgtaaaatatgtaacagAAATTTTAGGAAAACTGATACTATGGTAAGACATTTAAATGTTCACAAAAGAACTAATCCAAAGGAAGTCTTCTCTAttctgaaagaaattaaaaataaaagaaaattggagaaCATAATTGAAccagaaaaaagagaagtgGGAAATAgtaaagatgaaaaagaaacaaaggaagaaaatattagTGAAAGTATTACTTCGCGTGTCCTTAAAAGAAAGTCTTTAGAATCTAAAGATTCTAAAAAATTAAACAGCCACAAGAATCGATATGGACACAATGAAGATTCAGCattagaaatacaaaaacCAAGTGACGACAAGTCAgccattaaattaataaatagttgGATTCGAGAGGAACTTGATTCagataatgaagaaaaaggctttccttgtaaaatttgtggaaaatcATATGATACGAAAAAATCTTTATTGAAACATCAATTGAGTATGCATAATATAGAAGGAGAAAACTGCACATCGTGCGGTAAGATGTGTGCTTGTgatgaaaaggagaaagaccaacataaattaaacgaaagattAAAACCATATCGATGCGGAGAATGTAATAAATCCTTTgagaaggaaattaaattgcaaaaacatATAAGAATTCATGAACGTGCTAAAGAACAACAAGATGTAAATTTTAAGCGATTTTTATGTCACATATGTAGCAAAACTTTTAGACAAAATACAGGTCTCATGTTTCATATGAGAACGCACACAGGATACAAGCCTCACGTTTGTAAATATTGCGGAAGAGGATTCACGTCAAATTCTAATTGCATTAATCATGAAAGAACTCATACTGGTGATAGACCATTTGTTTGTCATTTCTGTAGTGCTGCTTTTGCCAAATCATGCACACTTAAAGCACACATTACAACACATACGGGAGAAGCAAATTATCATTGTAAAACTTGCGGTAAATCATTTAGAAGATTAAAGTATTTGAAAGAGCACAAATTTACCCATACAGGAGAAAAACCATATGCTTGTAAAATTTGTGGCACTGCATATAGCCATTCTGGTAGTTTATTTGTACATGAGAAAAAGTGTAAAGCACAGTATAACAGCTATCAATCTAATTCAACACAAAATATGCAAACTTATTGTGAATCCGAGACGTCTTCACCAACTCctattattacagttttacCGCAGGTTTATCTAAATAATACTAATGCGATAAACacacaaaataataaaacctATATCGACAATatccaaaaaataaattctcagAATGTTGTTAATGCAAATGCTGTTAACACAACAGATTTGCATATACACACGAATTCGGATATATCTGATGTTTCTTTAGCTGTTAAAAGTTTTGCTCTTATCGGGCAGATGTTTCAATCGTAG
Protein Sequence: MEVENKATILSNDCGNVCRVCLTTNQNNQYIFDGKRIVFDGNLINEDIIDLTEKLRLCTGVEVLENDGLPSTICTKCILKINDAHELRKQCQQSDIRLRELYGKVEKIYNINLCKTTKDQYCQTDYSLTSDLIKIENNSFSAMGYNSYPTVILNSDTKDIKDHEVINESKYTEEKESNSNQNKQNAYIKCKQAEYEKNVTGKEVYRTRRMTMFKRVTSIENLKNHKERQRKYIKKNTAIKWDNAADINKVDSQSSYNCPKCTRCYSTKRSLDRHILTHDEKKFTCDKCNKYFFQLDKLIQHTKLHIVKEKPKPVLCKICNRNFRKTDTMVRHLNVHKRTNPKEVFSILKEIKNKRKLENIIEPEKREVGNSKDEKETKEENISESITSRVLKRKSLESKDSKKLNSHKNRYGHNEDSALEIQKPSDDKSAIKLINSWIREELDSDNEEKGFPCKICGKSYDTKKSLLKHQLSMHNIEGENCTSCGKMCACDEKEKDQHKLNERLKPYRCGECNKSFEKEIKLQKHIRIHERAKEQQDVNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHKFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNSYQSNSTQNMQTYCESETSSPTPIITVLPQVYLNNTNAINTQNNKTYIDNIQKINSQNVVNANAVNTTDLHIHTNSDISDVSLAVKSFALIGQMFQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01418508;
90% Identity: -
80% Identity: -