Basic Information

Insect: Melipona quadrifasciata
Gene Symbol: gtf3a
Assembly: GCA_001276565.1
Location: KQ435955.1:258551-264151[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 7.2e-05 0.0062 16.6 0.1 2 23 486 507 485 507 0.97

2 17 9.9 8.4e+02 0.5 0.8 1 19 513 531 513 532 0.89

3 17 0.24 20 5.5 1.3 2 23 540 561 539 561 0.96

4 17 0.00015 0.013 15.6 1.2 3 23 570 591 569 591 0.98

5 17 0.0015 0.13 12.4 2.0 1 23 598 621 598 621 0.95

6 17 5.4e-05 0.0046 17.0 0.7 1 23 627 650 627 650 0.94

7 17 0.75 64 4.0 2.5 2 23 658 678 658 678 0.94

8 17 8e-08 6.8e-06 25.9 2.1 2 23 684 705 683 705 0.97

9 17 2.9e-06 0.00025 21.0 0.3 1 23 711 733 711 733 0.99

10 17 0.00032 0.027 14.6 2.4 2 23 745 767 744 767 0.95

11 17 0.0045 0.39 11.0 2.5 1 23 773 796 773 796 0.96

12 17 0.014 1.2 9.4 3.8 3 23 819 840 818 840 0.95

13 17 0.00071 0.061 13.5 1.4 2 23 847 869 846 869 0.96

14 17 2.2e-05 0.0019 18.2 1.0 2 23 877 898 876 898 0.96

15 17 0.00069 0.059 13.5 2.3 1 23 904 927 904 927 0.96

16 17 0.19 16 5.9 3.2 2 23 934 955 933 955 0.96

17 17 0.0055 0.47 10.7 2.6 1 23 961 983 961 983 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	7.2e-05	0.0062	16.6	0.1	2	23	486	507	485	507	0.97
2	17	9.9	8.4e+02	0.5	0.8	1	19	513	531	513	532	0.89
3	17	0.24	20	5.5	1.3	2	23	540	561	539	561	0.96
4	17	0.00015	0.013	15.6	1.2	3	23	570	591	569	591	0.98
5	17	0.0015	0.13	12.4	2.0	1	23	598	621	598	621	0.95
6	17	5.4e-05	0.0046	17.0	0.7	1	23	627	650	627	650	0.94
7	17	0.75	64	4.0	2.5	2	23	658	678	658	678	0.94
8	17	8e-08	6.8e-06	25.9	2.1	2	23	684	705	683	705	0.97
9	17	2.9e-06	0.00025	21.0	0.3	1	23	711	733	711	733	0.99
10	17	0.00032	0.027	14.6	2.4	2	23	745	767	744	767	0.95
11	17	0.0045	0.39	11.0	2.5	1	23	773	796	773	796	0.96
12	17	0.014	1.2	9.4	3.8	3	23	819	840	818	840	0.95
13	17	0.00071	0.061	13.5	1.4	2	23	847	869	846	869	0.96
14	17	2.2e-05	0.0019	18.2	1.0	2	23	877	898	876	898	0.96
15	17	0.00069	0.059	13.5	2.3	1	23	904	927	904	927	0.96
16	17	0.19	16	5.9	3.2	2	23	934	955	933	955	0.96
17	17	0.0055	0.47	10.7	2.6	1	23	961	983	961	983	0.98

Sequence Information

Coding Sequence: ATGAAgcacattgaaattaaaaacaaggATCATAATTATAGCGAAGTAAAATTACGTAATCTCCAGCATGCTACTGgcaatattctaaatatatgCGACAATGATATTAAAACAaaattatcaatattgGAGCAAACGAAACAGGAGTTGAAAAAGTATTGCAGAACTTGTGCTGGTTTAAAACTTCCATTAGTTGATATTTTTAGTGAAAAAGGTAATCAAATGAGATTAAGCCAACAAATTAGACATTTAGAGGACATAAATCATCCATCTAcaagtaaagaaaataatgaaaatgttcCAAAAATGTCTGCAAGGTTTTCATTAAAAGATGATAAAGTACTTGAAAAAAACGTTCGGAAAGTAAATCATAAAGAGTCAGAAAGTAAAGTTGAAGTTGAGATTTTTGAAGAGTCAACTATTCTACAAAATAGTGATGATAATGAGTCTATAGAAGAATTTGATCCAGACGATCCTCCTTTTCAACCTGATAGCTCTGATGTAGCAGAATCTGATGATGAAATAGAAATACCAAATGCAAAAAGACGACATATTCAACAGAAGGAAAATTGTAATAATCAATCTACTGAGTTACACAGCATTATTAATTCTGAAACTGCTATATATAATACTGAAAGTACAAAAGAATGTTCAAAACAaccaaatatattaaaacgcAGGTTGTTATTACAATCTAAAAAAGAGTCTGCGGAAGAAACCGATGAAAATTGTCAGTCAAATATTTCTGATAAATGTGGAAGCCATAAGgatttaaaagtacaaaaactTGATGTAAACAATTCTTTAAACAagcgaacaaaaaaatcagaaataagAGAACAGATTATAGAAGAACAAATAgaagaatataagaaaaagcgagaaaaagtATTAGGTGGACATGCTAATATTGTTGCACTTCCAAAACTTGAAGAATCTCGTTGTTTTAAACGTATTGAAAATCAAGATAATCAAAGATCTCTTACTGTAGAAAGTGATTCTGTTGTAAATGTACAGTTTAATAAAGATGATGGTGAATTGAATGCAACTACTAATAGTGAAgatgatatttttgaaatttccgaaTCAGCTAAAGAAAAGTctgcaaatgaaaaaacatATGTAAATACTGAAGAATATTTGTCACATTTAGCAAAACTTAAATTGAAATGGGaagaagcaaaaaagaaaaaagagtcACTTCAAAAAGAACTAGATGAATCTTATACAGAAggaaatattgagaaattaacaagaattttaggagaaaaagaaaaaaacttgcAAGATTTCCAAGATTATCTGAAACaacgtaaaattgtaattacaagaTTAAAAGATGAAGACATTATTTCTCTTTACGAAGATAGAAATAATGCAGTGCTTAAAAACAGTTTACCTGACTTAATAGATGAAAGTCAACCGGCAGATTATATTCCAGAAGAACATTATTTAGAATGTGATTATTGTCCAGAGACATTTGCTTCTAAAGAAGTTCTTGAAgaacatttgaaaatgcatgattataaaattatgcatTTTTGCGAAGATTGTATGGAAGAATTTCCAACAAATAAAGCAAAACGAAATCATAATGtaatttgtatgaaaaaattagtatgtaaatattgtaatatgatGTTAGATTCAAAAGGGAAAAAGCGTCAGCATGAACAAAAACATTGTGATAGTATGTATGGACAATTATGTGATGTATgtggtgaaaaatttaaacatcaaGGAACATTGGATCAACATGTAAAAACACAACACATGAGTTGGgagaaaatatatcaatgtCCAAAGTGTCCTAAAAAGTTTGCATTCAAACAAAAACTTagttttcatttgaaatctGTACATACAACATTAAGGGCCTATTTATGCGAGGATTGTGGAGCTGATTTTAAAAATCCTGCAAGTCTGAGACATCATAGAATACGTAAACATCAACCTGTAGGTAATAAAAGAGAATGTCCAGTATGTCATAAATTAGTACCATTTTATAGCCTTTCTAAACACATGCATACTCATAAAGCATATACTATTCAGTGCCCACACTGTgacaaaatgtttaaaaatagttCAACTTTAAAACAACATGTGAGAATTCACGAAGACCAGCGTCAATATCGATGTGATACTTGTGGTGTTGGATTTAATAGACGAGATGGCTTAAGGTTACACATGAAAGTGCATGAAAAAACTGATAGTAGAGGATTAAAAGAATGTTCGTGTCAAGTATGTGGTGAAAAGTTTCCAAATCATTCAACACTTGTCATACATAGAAACCGAGTTCATAAAGATGGGAGGCAATATACTTGTCACATATGTAACAGATCGATGATTTCAACTAGATCGTTAGAGTGGCATATGTCTCATATACACAATGAATCACTTCCTGGTGTCGTAAAAGAAGACATAGATGGATCaccagaaaagaaaagagcatCGTGTTATCATTGTAATAAGACATTCAAAACAGAAATGATTTTGAGAacacatattaaaaatacacatatgGAGAAAGATCCTATGAAGTGTTTAGACTGTGAATTAACATTTACTTCTGAAGTTAGATTAAGACATCATATGATGATCACACACAATAGATTAGAAGGAACTTTGCCTTGTCCACATTGTCCAAAGAGATTTGTGAATCAACTCAGATTAAAAACTCATATGATATCCCATTCTGAAGAAAGGCCATATACTTGTGAAATCTgtggatttaatttaaaaactaaaatacaaTTGATAAAGCATCATCAAAATAGGCATAGCGATGAAAGACCTTTACAATGTAGATATTGTCCTTGGAGATGTAAACAAGTTAGCGCTCTTGTATGTCATGAAAGAACTCATACAAATGAAAGACCATATTCTTGTAGCGTGTGTAGGcaacgttttaaatatttaggtgataaaaataaacacgAAAGACGACATGAAAGCTTAGGAGGATCCGGATTTAAAAGAATAGTACTTGGTCGAAACATCAAAGCTACTAAAGTACAGGAAGATTCTTCTTGTTCTGAACATGAGcaagaaagtttaaataatacgGAATCTCAAGTTCCTGAAAGTGAATATCAAGAACAGACAGATCAACAATTTGAGGAAGAGCAAAtagtgaaatttgaagaagaacAAATAGTGAAGTTTGAAGAAGAACAGATAGTTAAATTCGAAGAAGAACAAATTGTTAAGTTTGAAGAACAAGAAATAACAGAAGAGTATGAACAAGTATATGAACAGGAATATGAAGAGACATCTAGAGAGGCTTCGGATGCAGCAGAAGTTATAATGAACATGGAAGATACTACTGTTTACACAGAAGAAGTAACTACAGATAATATTGAACCTACAGAAATTATGACAGATGAAATAATGACAAATGAGATATTACAATCAGGTGCTGTAGTTCATTTGCAACAAGAAGATGATTCAGGGAAAATACAAGTGATTCCAGTGATGTTATCCTTACCTGATTTATCTGATGCAAATACAGAGGTCAATTTAGCTACTGCAtctattatgtataataattga
Protein Sequence: MKHIEIKNKDHNYSEVKLRNLQHATGNILNICDNDIKTKLSILEQTKQELKKYCRTCAGLKLPLVDIFSEKGNQMRLSQQIRHLEDINHPSTSKENNENVPKMSARFSLKDDKVLEKNVRKVNHKESESKVEVEIFEESTILQNSDDNESIEEFDPDDPPFQPDSSDVAESDDEIEIPNAKRRHIQQKENCNNQSTELHSIINSETAIYNTESTKECSKQPNILKRRLLLQSKKESAEETDENCQSNISDKCGSHKDLKVQKLDVNNSLNKRTKKSEIREQIIEEQIEEYKKKREKVLGGHANIVALPKLEESRCFKRIENQDNQRSLTVESDSVVNVQFNKDDGELNATTNSEDDIFEISESAKEKSANEKTYVNTEEYLSHLAKLKLKWEEAKKKKESLQKELDESYTEGNIEKLTRILGEKEKNLQDFQDYLKQRKIVITRLKDEDIISLYEDRNNAVLKNSLPDLIDESQPADYIPEEHYLECDYCPETFASKEVLEEHLKMHDYKIMHFCEDCMEEFPTNKAKRNHNVICMKKLVCKYCNMMLDSKGKKRQHEQKHCDSMYGQLCDVCGEKFKHQGTLDQHVKTQHMSWEKIYQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECPVCHKLVPFYSLSKHMHTHKAYTIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMKVHEKTDSRGLKECSCQVCGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISTRSLEWHMSHIHNESLPGVVKEDIDGSPEKKRASCYHCNKTFKTEMILRTHIKNTHMEKDPMKCLDCELTFTSEVRLRHHMMITHNRLEGTLPCPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVLGRNIKATKVQEDSSCSEHEQESLNNTESQVPESEYQEQTDQQFEEEQIVKFEEEQIVKFEEEQIVKFEEEQIVKFEEQEITEEYEQVYEQEYEETSREASDAAEVIMNMEDTTVYTEEVTTDNIEPTEIMTDEIMTNEILQSGAVVHLQQEDDSGKIQVIPVMLSLPDLSDANTEVNLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00684931;
90% Identity: -
80% Identity: -