Basic Information

Insect: Melipona quadrifasciata
Gene Symbol: -
Assembly: GCA_001276565.1
Location: KQ435699.1:651293-655041[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 5.4e-06 0.00046 20.2 0.4 3 23 306 327 304 327 0.96

2 17 0.026 2.2 8.6 0.3 1 23 331 353 331 353 0.97

3 17 0.023 1.9 8.7 4.2 2 23 360 382 359 382 0.95

4 17 0.00022 0.019 15.1 0.3 1 23 389 412 389 412 0.95

5 17 0.23 19 5.6 0.2 1 12 417 428 417 431 0.85

6 17 1.7e-05 0.0015 18.6 2.3 1 23 447 469 447 469 0.98

7 17 9e-06 0.00076 19.5 1.3 1 23 473 496 473 496 0.97

8 17 4.6e-06 0.00039 20.4 1.1 2 23 501 522 501 522 0.98

9 17 3.4e-06 0.00029 20.8 0.6 1 23 528 550 528 550 0.99

10 17 0.011 0.94 9.7 0.2 2 23 691 713 691 713 0.91

11 17 0.016 1.3 9.3 1.5 1 23 717 739 717 739 0.96

12 17 0.0031 0.26 11.5 2.2 1 19 745 763 745 768 0.89

13 17 9.4e-06 0.0008 19.4 1.3 1 23 775 798 775 798 0.98

14 17 0.09 7.7 6.9 6.9 1 23 833 855 833 855 0.98

15 17 0.00014 0.012 15.7 1.1 1 23 859 882 859 882 0.97

16 17 0.00063 0.054 13.6 0.7 3 23 890 910 888 910 0.92

17 17 2e-05 0.0017 18.4 3.7 1 23 916 938 916 938 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	5.4e-06	0.00046	20.2	0.4	3	23	306	327	304	327	0.96
2	17	0.026	2.2	8.6	0.3	1	23	331	353	331	353	0.97
3	17	0.023	1.9	8.7	4.2	2	23	360	382	359	382	0.95
4	17	0.00022	0.019	15.1	0.3	1	23	389	412	389	412	0.95
5	17	0.23	19	5.6	0.2	1	12	417	428	417	431	0.85
6	17	1.7e-05	0.0015	18.6	2.3	1	23	447	469	447	469	0.98
7	17	9e-06	0.00076	19.5	1.3	1	23	473	496	473	496	0.97
8	17	4.6e-06	0.00039	20.4	1.1	2	23	501	522	501	522	0.98
9	17	3.4e-06	0.00029	20.8	0.6	1	23	528	550	528	550	0.99
10	17	0.011	0.94	9.7	0.2	2	23	691	713	691	713	0.91
11	17	0.016	1.3	9.3	1.5	1	23	717	739	717	739	0.96
12	17	0.0031	0.26	11.5	2.2	1	19	745	763	745	768	0.89
13	17	9.4e-06	0.0008	19.4	1.3	1	23	775	798	775	798	0.98
14	17	0.09	7.7	6.9	6.9	1	23	833	855	833	855	0.98
15	17	0.00014	0.012	15.7	1.1	1	23	859	882	859	882	0.97
16	17	0.00063	0.054	13.6	0.7	3	23	890	910	888	910	0.92
17	17	2e-05	0.0017	18.4	3.7	1	23	916	938	916	938	0.97

Sequence Information

Coding Sequence: ATGACGAAAAGGCCCAAGCCACCGAACCCGATGCAACAGCTCGTTGTACTTTGTCGCAGATTCCCGGACCGGACAAATGTTAATCGAATGCCTCTTAAAATTAATCCAGTTTTCGTACGAAGTTTGgggaaatgtaaaaaaattgtacaaaattccAACAAGTTACAAACGTTGAAGAGAGTTACAGACAGTTTAACGGATAACACGACGCGGAACGAAATAAACgtcgatttaatttcgaacgGGAATGTTGTAAATAATAGCATTTGGTTAAATTCAGTTAACAGTGATTCATCGTCGACAGAAACGAATAACGATACGACTGATTCAGGAAAAACTGAGGAAGATACAAAGTTAGATTCGGTGAAACAATTGTTGGTTCCAGTCAGAGATCCGGTGACCAACGAGATTAGAAATACGCTGGCACCAATCAAGAACGTGGACGCTTCTGGATTGaacgtgattaaaaatattctgataccgatttgtaataaaaatggtTTTATATCGTACGATCTGAAAAAGGTCGTGGTGCCTATCAAGCGAAAGTCAAATTTGAATCAAACGCCACGGGACGGAAATAAGGTAATAATAAACATAGTACACCCAATGGAAAATGTGCAAAGTAAGAGTACTCCAACGACGTCAAAAGATTCTGAGAACGAAATAAAGTTACCAGAAGGGAATGAGAAGCCGGTGGTACGAGTGACATCAATCGAGAATAAAATGCAGTGCATGGAGGATGAGAATGAAGCAGAGAAGGACAAACAAGAGGAGAATAATCAAACAGAATTAACAGATGACGAAGTGGaacagagaaacgaagaggaagaggagacaGAATCGTTTAAAGCGCCTGACCCAGAAACCCAGAAAGAGGAAATGGACCGAATACTAGAAAACTTGAAAACTATCTGTCCAGTTTGTCAAAGGGTGTTCAAGAACGAGATCATGTTACAAAAGCACATACGTAGGTTCCACGAGAAGATCTATCCCTGTgacaaatgtaacaaatggTATCCGTCGAAACTGCTGCTGCAAGAGCACAAGATATCTCACGAGGACGACTCGTACCTGCAGTGTTCGATGTGCCACTTAAAGTACAAGCGTAAGATTGGACTGAAGTATCATCACATTCGAGTGCACAGCAATATAGAGCCAAAGTACATGTGTGACTACTGCGGCAAACGTTTCAAGTTGAAGATCGATCTGGGTGGCCACATCGAGAAAACACATCTGAACGTCTCTCACATCTGTAAAATTTGCGGCAAGGTCGTGAAGAACATCACGCACCACGAGTGGCAGCACGACAGGGTCGCCAAGAGGATCGTTTACAAGTACAGTTGCAATCTTTGTCGCAAGAAGTTCACAACCCGCAATAACTTGGACAATCATCTGCTGATGCACAAGGACGGCTTCAAGTGTACGCTGTGCGACAAGGTGTTCTCCTCGCCGTATTCTCTCGGCAGTCACAAGAGCACCAAACATAGACGGGGTGCGACGTGCACCATCTGCGAGAAATCGTTCGCTAGTAAgagcaatttttatcaacacgTGCTCACTCACGCTGGCATCAGGCCGTACAAATGCGACGTCTGCGGCGAGGATTTCACGCAGAGATCCAGCGTCTTGAGACATCGAAAGATTCATCCTGGGACTCTCCCACCGTTCACGGAAACCACACATTTTCAGtacacaatttttacaaataatgcAAATCAACTTTCATCTAATCCTAGCACACTGACACATCACTGTCCTTGTTTCAGAGAAGAACCTATCCCAGGACAACAAAGAAACCGAGAGAGAAATTCGTCTTACTGTTTAACAGCGGTCGATAAACGATCAAAAAGAAGATTGAAACACATAAAGTCGAAGTATCTCTCGGACGAATTTCCGCGCGACTCCGTTGATTCGGACGACTTTGAGAATTCACAGAACTCACTTggaagaaattcaaagaaattaaagacaGGCGTCCAAACGTCCTCACTGACGAAAGAAACCGAATCTGCCCGTTCAAAGAAAGACGAGGTCGAAGTGGATCGCGTGCTGGACAAGATCAAGAACACCTGTCCCTTCTGTGAGAAGCGTTTCGACGACGCGAAGAAAGTGGAGAGCCACGTGGCGTACGTGCACAGGAAACCGTACAAATGCGACATGTGTAAAAGAGCGTATCACACAGTTCGTACGTTGGAGGAGCACAAAGTGATCCATCGGCCGGATTACTACTTCGAGTGCAAGATCTGCCACGTGAGGTACAAGAGCGAGAACAGCTTGAACAGGCACGACATGCGCACTCACGGCGACTACGAGTCGAAGTACGTGTGCGAGCTCTGCGGACGTAGTTACAAGCTGAAGACAGACCTGACGTACCACATGAAGAGATCGCACGCCTCGGAATTGCAGATCTGTCGATTCTGCGGCAAGGAGGTGAGAAACGTGAAGGGCCACGAGTGGAGGCATCAGAAACGCAACAAGGAGGCGAGGTACGAGTACACTTGCCACCTGTGTCGCAAGAAGTTCCTCCACAGGAGCAGACTGGACAATCACTTGAGGCTTCACGAGAAGGGTTTCAAGTGCGAGGAGTGCGGGAAAGAATATCGTGGAACTCGCGAGTTGGTCAGTCACAGAAGATACAAGCACGGCCAGGCGAAAATACTGACTTGCATCTTGTGCCAGAAAACGTTCCCCTCGAgcagtaatttttatcaacacgTTCTGACCCACGCCGGGATCAGGCCTTACAAGTGCGACGTCTGCGAAAAGGATTTCACGCAACGTTCCAGCCTTTTGAGACACAGGACGCATCATCCTGGACCACTTCCGCCATTGCATTCGTCTCGTCCGCAGATTGCTGAATTAGCCAGGAGTTATCTGCAGAAACTGCAAAACGACAAGAGTTGCGTCTTTGACGCGAGATTACGATCGAAATCACGTTCTTCGTGGAACTAA
Protein Sequence: MTKRPKPPNPMQQLVVLCRRFPDRTNVNRMPLKINPVFVRSLGKCKKIVQNSNKLQTLKRVTDSLTDNTTRNEINVDLISNGNVVNNSIWLNSVNSDSSSTETNNDTTDSGKTEEDTKLDSVKQLLVPVRDPVTNEIRNTLAPIKNVDASGLNVIKNILIPICNKNGFISYDLKKVVVPIKRKSNLNQTPRDGNKVIINIVHPMENVQSKSTPTTSKDSENEIKLPEGNEKPVVRVTSIENKMQCMEDENEAEKDKQEENNQTELTDDEVEQRNEEEEETESFKAPDPETQKEEMDRILENLKTICPVCQRVFKNEIMLQKHIRRFHEKIYPCDKCNKWYPSKLLLQEHKISHEDDSYLQCSMCHLKYKRKIGLKYHHIRVHSNIEPKYMCDYCGKRFKLKIDLGGHIEKTHLNVSHICKICGKVVKNITHHEWQHDRVAKRIVYKYSCNLCRKKFTTRNNLDNHLLMHKDGFKCTLCDKVFSSPYSLGSHKSTKHRRGATCTICEKSFASKSNFYQHVLTHAGIRPYKCDVCGEDFTQRSSVLRHRKIHPGTLPPFTETTHFQYTIFTNNANQLSSNPSTLTHHCPCFREEPIPGQQRNRERNSSYCLTAVDKRSKRRLKHIKSKYLSDEFPRDSVDSDDFENSQNSLGRNSKKLKTGVQTSSLTKETESARSKKDEVEVDRVLDKIKNTCPFCEKRFDDAKKVESHVAYVHRKPYKCDMCKRAYHTVRTLEEHKVIHRPDYYFECKICHVRYKSENSLNRHDMRTHGDYESKYVCELCGRSYKLKTDLTYHMKRSHASELQICRFCGKEVRNVKGHEWRHQKRNKEARYEYTCHLCRKKFLHRSRLDNHLRLHEKGFKCEECGKEYRGTRELVSHRRYKHGQAKILTCILCQKTFPSSSNFYQHVLTHAGIRPYKCDVCEKDFTQRSSLLRHRTHHPGPLPPLHSSRPQIAELARSYLQKLQNDKSCVFDARLRSKSRSSWN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00982437;
90% Identity: iTF_00982437;
80% Identity: -