Mqua003328.1
Basic Information
- Insect
- Melipona quadrifasciata
- Gene Symbol
- -
- Assembly
- GCA_001276565.1
- Location
- KQ435752.1:1661519-1666219[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.038 3.3 8.0 0.5 2 23 448 469 447 469 0.97 2 15 3.3e-05 0.0028 17.7 1.4 2 23 474 495 473 495 0.98 3 15 1.3e-05 0.0011 18.9 2.5 2 23 502 523 501 523 0.97 4 15 0.77 66 3.9 0.6 12 23 536 547 533 547 0.92 5 15 0.00038 0.033 14.3 0.4 1 23 553 575 553 575 0.98 6 15 1.2e-06 9.8e-05 22.3 3.3 1 23 581 603 581 603 0.97 7 15 9.5e-07 8.1e-05 22.5 1.8 1 23 609 631 609 631 0.96 8 15 3.6e-05 0.0031 17.6 0.6 1 23 637 659 637 659 0.98 9 15 3.4e-05 0.0029 17.7 6.8 1 23 665 687 665 687 0.97 10 15 9.3e-08 7.9e-06 25.7 0.9 1 23 692 714 692 714 0.97 11 15 0.00025 0.021 14.9 0.3 1 23 720 742 720 742 0.97 12 15 4.6e-06 0.00039 20.4 7.8 1 23 748 770 748 770 0.96 13 15 2.4e-06 0.00021 21.3 1.9 1 23 776 798 776 798 0.98 14 15 0.0047 0.4 10.9 0.4 1 23 804 826 804 826 0.97 15 15 0.00026 0.022 14.9 3.2 1 23 832 855 832 855 0.97
Sequence Information
- Coding Sequence
- ATAGACTACGAATGGGCAGTAAAATTGAATCGGTTTAGTTTGAGTGCAATATGTCTTTGGCCTGCGGAAGAACAAGAtataagaaaacaattttggaTTAAATTACGTACAATGACATATTTTCTGCTAATTACCTTCGTGTGCACGATTCCTTGCTTGTATGCTTTGATCAAAGAATGTGACACTTTAATGGAGGTGACGGACAATCTTGCATATTCCATTCCTTTAACGATAACGgtaataaagtttattattgtGTCCAGTAAAAAAGAAGttctCTTGCCAATCGTAAATATGATTGCCGAAGATTGGGCCAAATTGAAAACGGACTTTGAAGAACGTGTAATGATACGACGAGCAAGAATggcaagaattattaatatatttggtTACATATTAGTATGTATTTTGATATGGTTGCTAATGGTTTTCCCGAGATTCGGCATCACTATTCGATATATAACGAATGTAACCGACATAAAGAAACTTCTCCCATTACCAACTTATTACATGTACGATGTTTCCGAAACtccatattttgaaattatgtaCATTATCCAATCTACCAGTCTACTGGTAGCGACATTCTGTTATACCGggattgataatttttttggaGTTGTAATCCTTCACATTTGTGGCCAATTAGAAAATCTCCGTTTTCATCtttcaaatatgaaagaatCACAGACATCAAATCAGATTTTAGCAGCTACTATAGAAGATCACATACGACTCATTAGAGCGATTAACGTGATAGAAAACACATCAACGCTGCTAGTTCTTgcattgttaattaattttggtaCGTGTGCTTGTATCTatggattattattaatcacaGTACCCGCTGGAAAAGAGGAATTTTCTGTAATTCGAGTGGtctatttaatttgtaattttgcaaatacatTTCTTCAAACGTTTCTCTATTTCATGGCGGGACAAATGTTAGTAACACAATCTGAGAGAGTACACGATGCTGTGTACGAATGCGAGTggGACGAAAACATTGTAAGCGTTGTACTTAAGGAAGAACCCGGCGATAGATTTGATCCAGACTACATGGAGGACATCTGCTCTGGGACATTCGAGAAGGTATTTTTACCTATCGAAAATAATGAAGTTGACTTCTCTAATGAAATgGTGAAACTTGAATTGGATGGAGAATCCAGTAGTCATCAAAACTGGACGGCGCAAATCGCAAGCACAAATTTATGTGACAAAGAAGATGGTGCTATGCAAAGGTGCTTAACAAATGCAAACTTTGCTCAAGTGCATGATGCAGAGAAACATTCTGGATTTTGTCCAAATGGACAGCAgccgaaattttataaaatacagtgTTCCATTTGCAAGAAAtggtttttaaataatgattcCATGGTCACTCATTTAAGGATGCACTGTAGTGGAAATCAGTGCGAGGTTTGCCAACAAAATTTTCAGGATAGTTCCAGTTTACATGCTCATATGTTGACTCATGTTGGAATGAGTCCATTGGAatgcaatatttgtcaaaaaCGATTTGCTTACAAATGGTGTCTACGTAGCCACATGCAAATGCATGTGCTAGAAAAACCGTACGACAATGACACGTTACAACAAAAATCTAGTCTAAACCGTCATGTGCTTACCCATACAGAGGAAAGACCATATAAATGTGATGTATGTTTTGCAGCATTTAGGGAAAAAGCAAAGTTGAACATGCACATGACATTACATGGTGGGAACAAACAATTCAAATGTACAATGTGTCACAGATCATTCACACAGAAAACAGCATTGAACAATCACATGTTAGCGCATAGCGGTGAGAAACCTCATGCAtgtaatatttgtgaaaaaacgTACAAACGAAAATCAGAATTAATAAGGCATACAATGGTTCACACTGGAGAGAGGCCATATGAGTGTAAAGAATGCCTAATGACTTTTAGAGAAAAGGCAAAATTAAACTCTCACATGCTTGTGCACACGGGTGAAAAACCACATGAATGTCATATATGCCATAAGGCATGTGCCCGAAAATCAGATCTTAATAGCCATATGCTATTACATACAGGGGGTCAATATGACTGCAAAGTCtgtgacaaaatatttactcGTAAATCGGATTTAAATCGACATACTTTGATACATACAGGTGAAAAGCCATTTGCCTGTGAATTATGTAACATGGCCTTTAGAGAAAAAACTAGATTAAATTCTCATATGCTTATACATACTGGTGATAAACGTCATGCCTGTCATATTTGTCACAAAACGTTCAAAGAGAAGTCTTCATTGCGGAAACACATGTTAAGTCACACTGGTGACAGACCATATGAATGCTATGTATGTCATAAAGCATTTACTCAGAAAACAACGTTAAATAGTCATATATTGGTACACGCAGGAGAACGACCATATGAATGTAGTGcatgtcaaaaaatatttaaggataaagcaataatgaaaaaacattTGTCTGTGCACATAAACGAAAAAACTCATGAATGTctgatttgtttaaaaaaatttacccACAAAGCTGCATTAAATAGTCATTTATCGACAAATCATACATCCTAA
- Protein Sequence
- IDYEWAVKLNRFSLSAICLWPAEEQDIRKQFWIKLRTMTYFLLITFVCTIPCLYALIKECDTLMEVTDNLAYSIPLTITVIKFIIVSSKKEVLLPIVNMIAEDWAKLKTDFEERVMIRRARMARIINIFGYILVCILIWLLMVFPRFGITIRYITNVTDIKKLLPLPTYYMYDVSETPYFEIMYIIQSTSLLVATFCYTGIDNFFGVVILHICGQLENLRFHLSNMKESQTSNQILAATIEDHIRLIRAINVIENTSTLLVLALLINFGTCACIYGLLLITVPAGKEEFSVIRVVYLICNFANTFLQTFLYFMAGQMLVTQSERVHDAVYECEWDENIVSVVLKEEPGDRFDPDYMEDICSGTFEKVFLPIENNEVDFSNEMVKLELDGESSSHQNWTAQIASTNLCDKEDGAMQRCLTNANFAQVHDAEKHSGFCPNGQQPKFYKIQCSICKKWFLNNDSMVTHLRMHCSGNQCEVCQQNFQDSSSLHAHMLTHVGMSPLECNICQKRFAYKWCLRSHMQMHVLEKPYDNDTLQQKSSLNRHVLTHTEERPYKCDVCFAAFREKAKLNMHMTLHGGNKQFKCTMCHRSFTQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACELCNMAFREKTRLNSHMLIHTGDKRHACHICHKTFKEKSSLRKHMLSHTGDRPYECYVCHKAFTQKTTLNSHILVHAGERPYECSACQKIFKDKAIMKKHLSVHINEKTHECLICLKKFTHKAALNSHLSTNHTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -