Basic Information

Insect: Melipona bicolor
Gene Symbol: -
Assembly: GCA_030673865.1
Location: JAHYIQ010000003.1:4898198-4902394[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 3.1 3.4e+02 2.6 7.3 2 23 245 267 244 267 0.97

2 20 3.2 3.6e+02 2.5 2.8 1 23 317 339 317 339 0.91

3 20 0.35 39 5.5 1.4 1 23 388 410 388 410 0.98

4 20 0.022 2.4 9.3 0.2 1 20 467 486 467 488 0.94

5 20 0.00094 0.1 13.6 0.5 2 23 529 550 528 550 0.94

6 20 0.0003 0.033 15.2 0.3 1 23 596 618 596 618 0.97

7 20 0.00073 0.081 14.0 0.1 1 23 624 646 624 646 0.97

8 20 2.6e-07 2.9e-05 24.8 0.8 2 23 690 712 690 712 0.96

9 20 0.11 12 7.1 1.9 2 23 720 742 719 742 0.84

10 20 0.0012 0.13 13.3 1.6 2 23 751 773 750 773 0.90

11 20 3e-05 0.0033 18.4 1.1 1 23 782 804 782 804 0.96

12 20 0.0056 0.62 11.2 0.3 1 20 854 873 854 873 0.97

13 20 0.2 22 6.3 0.3 1 23 892 914 892 914 0.96

14 20 0.0019 0.2 12.7 3.6 2 23 929 950 928 950 0.95

15 20 0.03 3.3 8.9 4.9 2 23 973 995 973 995 0.91

16 20 0.018 2 9.6 1.5 2 23 1047 1069 1046 1069 0.93

17 20 0.0054 0.59 11.3 0.6 2 23 1098 1120 1097 1120 0.92

18 20 0.21 23 6.3 0.1 1 23 1127 1151 1127 1151 0.95

19 20 0.054 6 8.1 0.9 1 23 1156 1179 1156 1179 0.97

20 20 0.053 5.8 8.1 0.7 2 23 1209 1231 1209 1231 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	3.1	3.4e+02	2.6	7.3	2	23	245	267	244	267	0.97
2	20	3.2	3.6e+02	2.5	2.8	1	23	317	339	317	339	0.91
3	20	0.35	39	5.5	1.4	1	23	388	410	388	410	0.98
4	20	0.022	2.4	9.3	0.2	1	20	467	486	467	488	0.94
5	20	0.00094	0.1	13.6	0.5	2	23	529	550	528	550	0.94
6	20	0.0003	0.033	15.2	0.3	1	23	596	618	596	618	0.97
7	20	0.00073	0.081	14.0	0.1	1	23	624	646	624	646	0.97
8	20	2.6e-07	2.9e-05	24.8	0.8	2	23	690	712	690	712	0.96
9	20	0.11	12	7.1	1.9	2	23	720	742	719	742	0.84
10	20	0.0012	0.13	13.3	1.6	2	23	751	773	750	773	0.90
11	20	3e-05	0.0033	18.4	1.1	1	23	782	804	782	804	0.96
12	20	0.0056	0.62	11.2	0.3	1	20	854	873	854	873	0.97
13	20	0.2	22	6.3	0.3	1	23	892	914	892	914	0.96
14	20	0.0019	0.2	12.7	3.6	2	23	929	950	928	950	0.95
15	20	0.03	3.3	8.9	4.9	2	23	973	995	973	995	0.91
16	20	0.018	2	9.6	1.5	2	23	1047	1069	1046	1069	0.93
17	20	0.0054	0.59	11.3	0.6	2	23	1098	1120	1097	1120	0.92
18	20	0.21	23	6.3	0.1	1	23	1127	1151	1127	1151	0.95
19	20	0.054	6	8.1	0.9	1	23	1156	1179	1156	1179	0.97
20	20	0.053	5.8	8.1	0.7	2	23	1209	1231	1209	1231	0.94

Sequence Information

Coding Sequence: ATGGACAAGGTGGTGGAGTTGCAAAATGTAGAAAACGTGTGCAGGCTCTGTTTATCCACCGACGAGCCCAGATTGTCGGTGTTCGAAACGGAAGACTCTCTGTTGTCCATGGCTAGCAAGATACAAGCTTGCCTATCGATTCAGATTTCAACTACAGATAAATTGTCGACACAGATATGCGCACAATgtgttaaaaatgtaaatcaaTGGCATAGTTACAAAGAAACCTGTTTAAGTTCACAAGAGAAGTTGCATCAGTGGCTGGAACGGCAGCATATGCAACAAAGTCCCAtgGTTGTAACCATCAAGGATGAACCTGTTGATTTGGACTTCTATGAAGACAATGTCGAAGTCATTTCTGAATCTACTACTGATTCAAATTTGGAAGTCACTAATCTTGAAGGGAATGTGAATCACGTAGAAGATAGTGCTCGATGTCAGAAAGTAACTGATGGTGATGAAGTAGCTGTAGATGAAGATCAACCAGTCTTGGTGACAGACatgaatatttctataaaaccTGAACTGCAAGATGATTGTGATACGGATTGTACTATAGAAATAGAATCCGTTACTGGTAATGAACTTGTCGCAAATCCTCTTGCAAGTTCAGAGGAGAGGATCATGGAAGCTGATTCCACTCAGAAATCCAGTGCATCTGCCTCAGCAAACAAGAAGAAAACCAGAAGAGGTCCTCATACTCACTTTAGAGGTGCacgtatttttaaacaaaaatgtgTACATTGTCAAATTAATTTGCATTCTAAGCATTCTTATGCAAAGCATATGCAAAGATTTCACGCTGACAAACAGAATGGTAGTGTCGCTAAACCGGAATTAAAAGATGAGGAAGAGCTTGTCGAAGATCTGGAAGATGAATTAATGAGTATGGAAAAGGATGCCCCATTGACACAAGTGCAGCAAAATATTATTGGTCAGTTGAAGACATTTTCATGTTACTCCTGTCAACAAAGCTTCAACGATCGCAGAAGCACGCTTTTCCATATTCGTCAGCATATGCCCGACCTGAGACCGCACACGTGTATCGCGTGTTTGACAGAGTTCCCAGATCGATCAATGTACAAGTTACATTGCGGAGCATCGTTTGAATGTGCAATGAAAATCGCCCTTGTTGTACCGAAACAAGGCGAGGAGAAATACTTCACGTGTAATATGTGTTTACGTCCTATGCAGAACAGGAAACAATTGCTTAGCCATTTGTCGAAACATTCGGATAAACAGTACGAGCAACTGGTATCCCCGACACGATCTCCTCCTAAATTGAAACCAGTGATTCCTCTGCCACCTTTGAAGCAAGAATCACGAAAAAGAacgttcgaagaaaattatattttaaacataccCAGCCCTTACAAAAATGGCGATCCTGCGCATAATCATATGTGTGACTTGTGCGGTATGATCTACAGATATAAGCCAAATATGCTGAGGCATAGGGATCTATGTCTATGTTTATCATCAGATGTTAGGACATCCTACAGATGTGTTCACTGTGGCATGACATATctggtatttaaaaaattccattctCACATTACACAGGAgcataaaaagaaagatatcgTATGTTCTGAATGTGGCAGCAAATTCAAATCTCCTAGTAATTATTTGGAACATCACGAGGGACATCGTCGCAATTGTGACAAAAAACACTCTCTTAATTCGAAAAGCGATTTAACGAAGATCCCGCAGAACATTTCAAATAAGGACTGGGACACGTTTGAGGCTGAAGTAAATGCTAAAAAACTGTCCGACAGTAATCAGTACAGCTGTGCTCTCTGCAATTTGGAATTTACTACCAGAGCCGAGTTAACAGAACACAGAAATCTACATCTGAAAGTGAAGATTTATTCTTGCGTCATCTGTCGTAGCATGTTCAGCAGCGCAGGTGCTTTGGAAATTCACATGAAGGATCACGGCATAGAAGACCCGAATGAAAGAAATGCAAACAGCTCCTGCTTAGAGTATGGTACGGTGGAAGAAGAATCAAAAGATTCGAACTCAATGAACGTAAGTGCCACTTCGGATCCTGGTGATAAAAAGAACGAGTGCAATAGgtgtggaaaaatattttcgaatagcGCAAATCTTAAAAGGCATATAAGAAATCTCCACAACGTTACTAGAGGCCACCTCAGCTGTTCCTACTGTTGGCGAACATTCAAGAGCAAAGAAACACACGACCGGCACGTTACAATCGATCATCTAAAATCCTCCAAATCCATGCTTCGATGTTCTAAATGTCCAAAGACTTTCTTCTTCCAAGCCAATCTGAATCTTCATTTCGAGAATACGCATACCGAGAAATCATTTCCAGTTGGCCACAAATGCGATATTTGCGGCAAATCTTTCATGGAAGAATCATCTTTGAAAATACACAGAAGTTGGCACAATCGAGCAAACTCTAGACTGAGCTTGTACTTCATGAAGAAAGAAGATCCAAAACAGGAGGAACCTTTGAATTCTAATACAAATACCCGGCCAGCGAGAGCGCGAAAGTCTTACCCGAATTCACCTTCGACAAAACCTAATGGTAATTTCCAATGTCAAGTCTGCAGTGAAAAGTTCAATGATGTAACAGAACTGAGGACACACTTATGGGACGTACACTGTGCACGCAACAAAAATGAGAAAACTTTCCCCGATGGCGAGTTCCATTGTGAACTTTGCATGAATGTTTTCCCGGATAAGGAAACGTTGGATGTGCATTTGCAGTGGCATAAGACTCAACCAATTCTCAACGATGTAACAAAGTCTGATTGCACGTGTGACATTTGTGGGAAATCATACAGCTCAAAGAAGATACTGTCCAGACACAAGAAACTTCACAAGTCCACAATTGCAGCTGCTGCAAAGTTACAATCACCTGACAAAAACTCAGCTAGCAGTCAACCTTCATGCACCATCTGTCACAAGGTGTTCAACAACAATCGCTCGCTTCAGTGTCATAGACTGAATGTACATGCAAACATATTCAACCAACAATCTCAACAGGTACAGAACAACACAAGAAGAGCGTCTCAGGAAGAGCCAAGAactaaaagaataaaattagagCAAGAGGACAGGCAAACACCTTCTGCCATGGATGCTATGAGCGCGGGCAAGAAATCCGTCATGTGCCACGTCTGTAGGAAATTCTTCGCAAACATGAGCGTGCTTTATAAGCACAAACAGTTGGTACACAAGACTCATACGAATCtggtaaaaaatttcactaaatCGTACCAAATGGAATGCATACCGTTGCCCAGCAGCGATGGCAAAGTCTCTTGTAACGTTTGTTACAAAAAGTTCCCTGGCGTGTCGAATTTGCGTCAGCACTTTACTGTAAAACACAAGAATGCTCCTGTTAAGTATGCTTGTACCGTAGATGGATGCAAACTCACATTTCCTACACCGATGATCCTAAAGAACCACGAAATGTCGCACACCAGCATCATCTTCAGTTGCAACTTATGTAACAGGCATGTGTTCAACAGGCCTGCGATGTCGAATCACATACTGACGGTACACAACATCGTCTACAACGCTGAGAGCAGCAAAAACTTCCACAGAGAGCTAGATTTGGGCAAATACGTGGTAGAGGGTGCAGTAGACGCTACCTGTCCTCAATGCAAGATCAAATATCCCAACAACAGGGCTATGAAGATTCACTACTTCAAGTATCACGAAAACTCAAACGAATAG
Protein Sequence: MDKVVELQNVENVCRLCLSTDEPRLSVFETEDSLLSMASKIQACLSIQISTTDKLSTQICAQCVKNVNQWHSYKETCLSSQEKLHQWLERQHMQQSPMVVTIKDEPVDLDFYEDNVEVISESTTDSNLEVTNLEGNVNHVEDSARCQKVTDGDEVAVDEDQPVLVTDMNISIKPELQDDCDTDCTIEIESVTGNELVANPLASSEERIMEADSTQKSSASASANKKKTRRGPHTHFRGARIFKQKCVHCQINLHSKHSYAKHMQRFHADKQNGSVAKPELKDEEELVEDLEDELMSMEKDAPLTQVQQNIIGQLKTFSCYSCQQSFNDRRSTLFHIRQHMPDLRPHTCIACLTEFPDRSMYKLHCGASFECAMKIALVVPKQGEEKYFTCNMCLRPMQNRKQLLSHLSKHSDKQYEQLVSPTRSPPKLKPVIPLPPLKQESRKRTFEENYILNIPSPYKNGDPAHNHMCDLCGMIYRYKPNMLRHRDLCLCLSSDVRTSYRCVHCGMTYLVFKKFHSHITQEHKKKDIVCSECGSKFKSPSNYLEHHEGHRRNCDKKHSLNSKSDLTKIPQNISNKDWDTFEAEVNAKKLSDSNQYSCALCNLEFTTRAELTEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPNERNANSSCLEYGTVEEESKDSNSMNVSATSDPGDKKNECNRCGKIFSNSANLKRHIRNLHNVTRGHLSCSYCWRTFKSKETHDRHVTIDHLKSSKSMLRCSKCPKTFFFQANLNLHFENTHTEKSFPVGHKCDICGKSFMEESSLKIHRSWHNRANSRLSLYFMKKEDPKQEEPLNSNTNTRPARARKSYPNSPSTKPNGNFQCQVCSEKFNDVTELRTHLWDVHCARNKNEKTFPDGEFHCELCMNVFPDKETLDVHLQWHKTQPILNDVTKSDCTCDICGKSYSSKKILSRHKKLHKSTIAAAAKLQSPDKNSASSQPSCTICHKVFNNNRSLQCHRLNVHANIFNQQSQQVQNNTRRASQEEPRTKRIKLEQEDRQTPSAMDAMSAGKKSVMCHVCRKFFANMSVLYKHKQLVHKTHTNLVKNFTKSYQMECIPLPSSDGKVSCNVCYKKFPGVSNLRQHFTVKHKNAPVKYACTVDGCKLTFPTPMILKNHEMSHTSIIFSCNLCNRHVFNRPAMSNHILTVHNIVYNAESSKNFHRELDLGKYVVEGAVDATCPQCKIKYPNNRAMKIHYFKYHENSNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01417894;
90% Identity: iTF_01417839;
80% Identity: iTF_00983095;