Basic Information

Insect: Melipona bicolor
Gene Symbol: -
Assembly: GCA_030673865.1
Location: JAHYIQ010000008.1:759145-761843[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.021 2.3 9.4 0.2 6 21 12 27 6 28 0.86

2 14 1.8 2e+02 3.3 0.0 2 20 34 52 33 54 0.90

3 14 0.49 54 5.1 0.7 1 18 229 243 229 249 0.73

4 14 0.014 1.5 10.0 3.1 1 23 359 381 359 381 0.97

5 14 0.00023 0.025 15.6 0.2 2 23 385 406 385 406 0.97

6 14 0.0011 0.13 13.4 4.9 1 23 417 439 417 439 0.97

7 14 0.035 3.9 8.7 0.1 1 23 458 479 458 479 0.76

8 14 0.00067 0.074 14.1 0.1 2 23 485 506 484 506 0.95

9 14 4.8e-05 0.0053 17.7 4.8 1 23 538 560 538 560 0.99

10 14 2.1e-06 0.00023 22.0 3.7 1 23 566 588 566 588 0.96

11 14 0.0011 0.12 13.4 3.9 3 23 596 616 594 616 0.97

12 14 1.5e-06 0.00016 22.5 0.8 1 23 622 644 622 644 0.98

13 14 9.2e-05 0.01 16.8 0.2 1 23 648 670 648 670 0.99

14 14 0.0004 0.044 14.8 0.2 1 23 678 700 678 700 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.021	2.3	9.4	0.2	6	21	12	27	6	28	0.86
2	14	1.8	2e+02	3.3	0.0	2	20	34	52	33	54	0.90
3	14	0.49	54	5.1	0.7	1	18	229	243	229	249	0.73
4	14	0.014	1.5	10.0	3.1	1	23	359	381	359	381	0.97
5	14	0.00023	0.025	15.6	0.2	2	23	385	406	385	406	0.97
6	14	0.0011	0.13	13.4	4.9	1	23	417	439	417	439	0.97
7	14	0.035	3.9	8.7	0.1	1	23	458	479	458	479	0.76
8	14	0.00067	0.074	14.1	0.1	2	23	485	506	484	506	0.95
9	14	4.8e-05	0.0053	17.7	4.8	1	23	538	560	538	560	0.99
10	14	2.1e-06	0.00023	22.0	3.7	1	23	566	588	566	588	0.96
11	14	0.0011	0.12	13.4	3.9	3	23	596	616	594	616	0.97
12	14	1.5e-06	0.00016	22.5	0.8	1	23	622	644	622	644	0.98
13	14	9.2e-05	0.01	16.8	0.2	1	23	648	670	648	670	0.99
14	14	0.0004	0.044	14.8	0.2	1	23	678	700	678	700	0.97

Sequence Information

Coding Sequence: atgggCTCGTTGACTCTTATTTGCCCAATGTGTTGCGGTGAAACGTTTAACAACCCACAGTCATTAAAGTATCACTTACTAAGCATGACGGATAATCTATACTGTCCCGGTTGTTCGCAACGATCTGACTCAGTAATGGCACTCATTCAACATTTGGATCGCTGCGGTTGTGCTGAGTCAGAGGCACAATCTGAATCAAATTATGAACAAGAGCAAGAATCTCAACCAGATGCAGAAGTACTAATGgATACAAACGTTGAAGGAATAGATCAAAGTTTTTTAGCAACTGTAAATGACAGTGGAATTATGATAGTTGGGGGACCTCAAACTATACAAGTTGATGAAAATGGAGATATTAAAGTCATAGAAAAGATGGAAACTGAAGAGACACAGATGGAGCAAAATTCTTTAGAATTTAAGATGACAGACAAAGTTCCTAGTATCAAAACAGAAGAGAAATCTTTAACCCAGGATCAATTAGTAACAATTTCAACCACTTCAGAGACAGATGATAAAAACAgagataaaaatgtaattaccATTTTGCCTGATGGCTCAGAGCTTCTAGATGGAGGTACTGGTGCTCTTATAAATATAGATCATATAAATGATGTAGGTGAATTAGATGAAGATGGACTTCTACATGTTAAACAAGAACTTTGCGAGatagaATCAGAAGCAGTTTATAGCTGTACTAGTTGTGACATGAGCTTTAATTCTCTTGTGGAACATATAAAGCAATTTCACGATGGACAAGAAGTACTACTTGAAATAGCTGATCAATTGGATGATATACCTACAGTACCTGCAACTAATACCTTACATTCAGAATCAGGAAACATAGCTAATACTAAACAAAGACAGAGTATGAACACTTTGCGTACAGAAGAATGTGTAGACAGTGAAGGAAGATTGTACACAAGAAAAGTAGTACAAATAGAAAGATTTTGGGATAAAACTCCACCGCAAACATCACTTCAATCTGCTAAAGCAccaatgattgaaaaattcttttctaatgTGGAAGGAGTGAAAGTACGAGAAAAAAGATTAGCTACAACACCAATGAGAATGTACAGATGTAATCAGTGCCTTCagcaattttccaaattagGAAACTTCCGAGTACATGCATGTCTTCATGGCAATAATCGTTGCGATAGTTGTGACCAAACTTTTGCAACACCGAAAGCATTACAATTGCATGCAAAAGTACACGAAGGTGAACCTGATCCAAATCAAAAAACTTTCATATGCGAAACTTGTGGTACAGAATTTTGTTCGCACAAAAGCTTGCGCTTACATTCTCGAATGCACGCGCCAGTTAGAGCAAGGCACGTTGATGCACCTGAAGGAACACCTAGTGCAACATTCACATGTCCCGAGTGTGGTAAAACGTTAGCAGAATCGTACAAAGAAGCGCACATGGCATTGCATTCTGGTGACTCTGTAACTTGTACTGTGtgtaatagaaaatttgaCTCTGCCGATAGTTTGGCAATGCATGCCGCAGTACATACAGAATTAAGTCAACCACATTCACCGACACCACCTACTACTGTTACTACTGAAACAGCTACAACTGCCGAACCCGCAGAAAATCAAAAGCCTTATCAGTGTCAACATTGTGGTCGAAGATTTACGAGACCTCATGAAAAAGTAAAACATGAACGTATTCATACTGGAGAAAAACCACACGCGTGTGAAGTTTGTGGTAAAACTTTTCGTGTTTCCTATTGTCTGACTTTACATATGAGGACTCATACTGGTGTCAGACCATACGGATGCCAACATTGTGGCAAAAGATTTAAAGCTTCTTCTGTGTACAATCATCATTTACTTACACACGGAGAAGAACGTGCTTATACGTGTCCTTACTGTCCAAAAACGTTTAAAACGCGTGTTCAATTAGCAGGACATAAAAACAGTCACACTAAACCATTTCGATGTACCGAGTGTTCCCGTCCATTTGCTTCCTTGTATGCTGCGCGTGCTCATATACAAACTCACAAGaaagacaataatttaaaattcagttGTTATATTTGTGGTGCATCCTACGGTAGAGCATTTGCGTTGAAGGATCATTTAAAACAACATGGTCAAGATGTGCTGGCTCCACCAGAACCGGCACGGGAAGAAGAAATTCACGAAGGAGAAGATTTTTTGCTTGCAGAAGAAGAAGTTGAGGATGACGAACTAGTTATCCCGTCACCGTTGCCCGTTGCACAATCGTCAGAAGCTGATGATACAGAATGA
Protein Sequence: MGSLTLICPMCCGETFNNPQSLKYHLLSMTDNLYCPGCSQRSDSVMALIQHLDRCGCAESEAQSESNYEQEQESQPDAEVLMDTNVEGIDQSFLATVNDSGIMIVGGPQTIQVDENGDIKVIEKMETEETQMEQNSLEFKMTDKVPSIKTEEKSLTQDQLVTISTTSETDDKNRDKNVITILPDGSELLDGGTGALINIDHINDVGELDEDGLLHVKQELCEIESEAVYSCTSCDMSFNSLVEHIKQFHDGQEVLLEIADQLDDIPTVPATNTLHSESGNIANTKQRQSMNTLRTEECVDSEGRLYTRKVVQIERFWDKTPPQTSLQSAKAPMIEKFFSNVEGVKVREKRLATTPMRMYRCNQCLQQFSKLGNFRVHACLHGNNRCDSCDQTFATPKALQLHAKVHEGEPDPNQKTFICETCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPSATFTCPECGKTLAESYKEAHMALHSGDSVTCTVCNRKFDSADSLAMHAAVHTELSQPHSPTPPTTVTTETATTAEPAENQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYGCQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHGQDVLAPPEPAREEEIHEGEDFLLAEEEVEDDELVIPSPLPVAQSSEADDTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625657;
90% Identity: iTF_00226756;
80% Identity: -