Mbic003952.1
Basic Information
- Insect
- Melipona bicolor
- Gene Symbol
- -
- Assembly
- GCA_030673865.1
- Location
- JAHYIQ010000002.1:9289196-9294022[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.085 9.4 7.5 6.4 1 23 87 109 87 109 0.97 2 18 9.4e-07 0.0001 23.1 0.4 1 23 115 137 115 137 0.98 3 18 0.073 8 7.7 2.5 1 23 142 165 142 165 0.95 4 18 5.1e-05 0.0057 17.6 0.5 1 23 171 193 171 193 0.97 5 18 4.2e-05 0.0046 17.9 0.2 1 23 199 222 199 222 0.97 6 18 2.4e-05 0.0026 18.7 0.4 1 23 232 254 232 254 0.94 7 18 3.2e-05 0.0035 18.3 1.6 1 23 258 280 258 280 0.95 8 18 4.5e-06 0.00049 20.9 0.1 1 23 286 308 286 308 0.98 9 18 7.5e-05 0.0082 17.1 0.6 3 23 518 539 516 539 0.94 10 18 0.00026 0.029 15.4 2.2 1 23 543 565 543 565 0.98 11 18 0.0047 0.51 11.5 1.9 1 23 571 594 571 594 0.97 12 18 0.00024 0.026 15.5 0.7 1 23 601 624 601 624 0.95 13 18 1.9e-05 0.0021 19.0 0.5 1 23 658 681 658 681 0.97 14 18 2.7 3e+02 2.8 0.2 5 16 695 706 694 708 0.87 15 18 2.2e-05 0.0025 18.7 0.3 2 23 720 741 719 741 0.96 16 18 2.6e-05 0.0028 18.6 4.5 1 23 745 767 745 767 0.96 17 18 3.6e-06 0.0004 21.2 1.9 1 23 773 795 773 795 0.98 18 18 3.9e-06 0.00043 21.1 0.6 1 23 801 823 801 823 0.99
Sequence Information
- Coding Sequence
- ATGATAAACTGGAAAGCTCTCGGGGTCGTAGATTGGGACGCGAAATCCAAAAAGCGCGGTGAACAGGCCGTCAAGATCTTCGATTCAAGATCAGAGTCTCCGTCGTCAGAACCATCGGTAGAACAAGAGAGACCCTTGTCTAACAGAAAAGATCAGATCTTAAAGGAAGCCAACTGTTCTGCGAATTCCGACAGCGATTCGCCGACGAGTTCAACCGGAAGGAGGAAAAGGAACGACAAACACGAAGGGCAAGAACGACACGTCTGCTCCATCTGCAAGTTGCACTTCGACAGACGAGGGGATCACAAGCGCCACATGATCAAACACAGCGATCTTCGCCCGTACAAATGCGAGATCTGCGACAAGGCGTTCAAACGTTCCTCGGAGATGTCCAACCACGCGCAGATCCACCGTGGCATCGAGCACGCGTGCGAAGCGTGCGGTTTCACCACGATCAACAAACTCTCCCTGAGGATGCACCATCGTCGAGTTCACCAGCGTGACTTTCGTTACCGTTGCGACCAGTGCGACAAGGGTTTCATGTCCAATTACGAACTGGAGGATCACAAGGCCAGCCACCTGGACGGGAAGACGTTCGTCTGCGAGTTTTGTGGCAACGCCTACTCGCAGAAGTCCTATCTGGTGGCGCACAAACGCGTGATCCACGGGATCCAGAGGAACGCGCCGAAGGAGTTCCAGTGCGACGTATGCAGGAAGAGCTTCGCTACCGAGCAGAATCTTCGCACTCACGTTGGCCTGCACTCGCAGACGTTCCTGTGCGCCCAGTGCGGCAAGAAGTTCGCGACCAACCACGCTCTGAAGCTTCACGCGCGAAGGCACACGGGCGAGAGACCGTACGAGTGCGCGATCTGCTCGAAGGCTTTCGCCAGATCGGCGGCGCTCAGGGTACACCGACTGACTCACACGGGCGAGAGACCGAGGTCTACGATCGCAGAAACATCACTCGGCCAGGGTAAAAATGATCGAGCGCAGTTCCAAGTTACTGTTCCAGCTTCCAGTCGAACGATAGGTGACTCGATGCTCTGGAAAATTGAGATAAAACGGGACCAGGATGACGAGAGGATGACGGCTAGAGACGACGAAGATGAAGTAAACGACAATAATTCCTCTTTAGGAGGAGAAGTAGATATGGTGAAGTCTGTTTTGGTACCTGTTAGAGACTCAGTGACGAAGGAAATCAGAAATGTGTTGGTGCCCGTTGAAGAGATGGACGATACCGGATTAAACGTCATCAAAAGTGTACTGATTCCTTTGCAGGAGGAGGATGGATCGATTTCTtacgaaattaagaaattcgtAGTGCCTATCAACCCGGAATTGAGCTTGCCACCGAGGAGAAAGCCCGAAGCTAAGTTATCGACGAGTAAAGCGAAAGGTATGCAGGtgaattgtaagaaaaaagaggagaaaggaacGGTATCGTTTGATACCTTTGAAGAAGCTAgacaacaagaaaaaaaagaagggaagcAAAAGGAGACGaaggaaatagaaaaagtagATCAGATATTGGAAACCTTGAGAGACATTTGTCCATTCTGTCAGAAGCGTTTCAAAGACGAAGACCAAATGCAGAAGCACATTGTGAAAACACACAGGAAACCCTACAATTGCGACAAGTGTCACAAAGGATACTCCTCCGACTTCGCTCTGGAGGAGCATCAGAAAACGCACGAGCTGGTATCGTTTTATCAGTGTTCCACTTGCCAGATGCAGTACAAGACGACGACGGGATTGAAGTATCATCAGATCCGCGAGCACAGCGACATAGACCCGATGTTCACGTGCGACTACTGTGGGAAGCGGTTTAAACTGAAGCTGGACTTGGGTCTTCACATCGACAGGTCTCACATGAACGTCACTCACATTTGCAGATTTTGCGGCATGGCCGTGAAGAACATCGCGTATCACGAGTTGAAACACGAGAAACATAAGAAAGCCAGTTCCCTCTATCGTTGCAGCATCTGTCCTAGAAAATTCAAAGCGTGGAACAGTTTGGAGAACCATTTGCTAATGAAACACAAATCGCCCGGCGTGGGATCGCCCGATATGTTGAGGACGCTCTGCGAGAAAAAATTTCGGTCGAGAAGTGACTTTTACCAGCAGGTGCTCAGTCAGTCGGTGGCCAAGCAAAATAAATGCGTCGTGTGCGGCAAAACCTTCGCCTTTGAGTACAATCTTCGCAATCACGTGGCCTCGCACTCGCAGACGTACTTGTGCTGCCAGTGTGGCAAGAATTTCACCACGAATTATTTGTTGAAGCTGCACCTTCGGAAACACACCGGCGAACGGCCGTATCAGTGCAAAACGTGTCTGAAGACGTTCACCAGATCAGACTCGCTTAGGATACATAGGCTGATTCACACCGGAGAGAGGCCATACGTGTGTGATCTGTGTGGTCAAAGTTTCACTCAGAGAGGGAGCATGATGATACATCGTCGCAAGCATCCCGGAGATCAcccgccgccgccgcctccTCTGATACTCAGTAGACTCGAGAATAACGAGCATTAA
- Protein Sequence
- MINWKALGVVDWDAKSKKRGEQAVKIFDSRSESPSSEPSVEQERPLSNRKDQILKEANCSANSDSDSPTSSTGRRKRNDKHEGQERHVCSICKLHFDRRGDHKRHMIKHSDLRPYKCEICDKAFKRSSEMSNHAQIHRGIEHACEACGFTTINKLSLRMHHRRVHQRDFRYRCDQCDKGFMSNYELEDHKASHLDGKTFVCEFCGNAYSQKSYLVAHKRVIHGIQRNAPKEFQCDVCRKSFATEQNLRTHVGLHSQTFLCAQCGKKFATNHALKLHARRHTGERPYECAICSKAFARSAALRVHRLTHTGERPRSTIAETSLGQGKNDRAQFQVTVPASSRTIGDSMLWKIEIKRDQDDERMTARDDEDEVNDNNSSLGGEVDMVKSVLVPVRDSVTKEIRNVLVPVEEMDDTGLNVIKSVLIPLQEEDGSISYEIKKFVVPINPELSLPPRRKPEAKLSTSKAKGMQVNCKKKEEKGTVSFDTFEEARQQEKKEGKQKETKEIEKVDQILETLRDICPFCQKRFKDEDQMQKHIVKTHRKPYNCDKCHKGYSSDFALEEHQKTHELVSFYQCSTCQMQYKTTTGLKYHQIREHSDIDPMFTCDYCGKRFKLKLDLGLHIDRSHMNVTHICRFCGMAVKNIAYHELKHEKHKKASSLYRCSICPRKFKAWNSLENHLLMKHKSPGVGSPDMLRTLCEKKFRSRSDFYQQVLSQSVAKQNKCVVCGKTFAFEYNLRNHVASHSQTYLCCQCGKNFTTNYLLKLHLRKHTGERPYQCKTCLKTFTRSDSLRIHRLIHTGERPYVCDLCGQSFTQRGSMMIHRRKHPGDHPPPPPPLILSRLENNEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -