Mbee006549.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Melipona beecheii
Gene Symbol
-
Assembly
GCA_032399605.1
Location
JAUCMO010000291.1:23216-34375[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 6 0.00012 0.0097 16.4 0.9 2 23 156 177 155 177 0.91
2 6 2.6e-05 0.0021 18.5 0.4 1 23 183 205 183 205 0.97
3 6 9.3e-06 0.00076 19.9 2.3 1 23 211 233 211 233 0.99
4 6 2.9e-05 0.0023 18.4 4.4 1 23 239 261 239 261 0.97
5 6 0.0018 0.15 12.7 1.5 1 21 267 287 267 290 0.85
6 6 0.00011 0.0094 16.5 1.1 1 23 298 321 298 321 0.91

Sequence Information

Coding Sequence
ATGTCCCAGAATAACCTTCTGCAAGGATACAACTgggAGACCCCGTACGAGGATCCGCAGGTGCAATTTACTCGTTCCATTCCGGATGAAGTAATCAGTGTTTATGAAGTCTATGTGAAAGAGGAGAACGCAGGTTCTGAAGGAAGGAACGATGTTACCGTCGTGTCGTCCGCAAATGATCATCAATTAATTCAGGGTGATTGCATGAACCTAAATGTAGCTATAGATTCTGAAGTAATTAACATTGACGGCGCTGTGACGAAGTTTCTCGGAAAGGATGCTTTCAAATACAAGattCTCGATCAAAATGTTAATTCGCCCGAAGATAACGTTATGGTGTATTCACACCCGGTTGTCGAGGAACCATCTTCGTCTTCCACTCGACTGATCGACAAGGATGATCCAAGATCGAAACttcattttgtgaaatatttgaagcGAGATgggaaaacgttgaaaatatgGGAGTGCGGGATTTGTTCGAAGGAGTTCCGGCATCAGTATACGTTGATGAGGCACTTGCCAACGCACACCGACGAGAGGAACTTTAAATGCGAGGCTTGCGGCAAAGCTTTCCGACAGTTGTCGACATTGAGCCAGCATAAGGCGATACATAGCGATGCCAGGCCGTACGTTTGCgaattttgcaagaaaacTTTCAACAGAGTATCTACGCTGATCTCCCATCGGAAAACCCATTCGGAGCACAAACCACACAAGTGTCAGGTTTGTGGAAAGGGATTTCATCAGAAAgGCAATTTGAGGAACCACGTGTTTACCCATACGAACGAGAGGCCGTACAAATGCGAGCTTTGTGGCAAAGGCTTCAATCAAATGTCGAATTTGGTCTGCCACAAGGTCAAAGCGCATGCACACGCGGAGAAAATGCAGCACGTGTGCGGAATCTGCGGCAAAGAGTTTCCGCGTCGATTCTCTTTGAGATCGCACGAAGAGTACAAGCACGGGATAAAGTATCGACATCCGGCTGGTGTGCAGCCGAGCATCAACGATCCGAACGTCATAAGAAATAAAAATGTTAGGATCGTACAGCTGCCAAATGGTGACCGAAATCAAACTATCGAAGTTAGGGACAAGGATCCATTAATGTCGGATGTGATGGAGCCTGTGGTGATAAACAAGATTGACACAAAGGCGATGGAGATGGCACTGATCGAGGGACAAACGCCGTTCGCGCTGTTTAAGCCAGCCAAAGGAATTCCTGTCCTTGTGAAAGTTTCTTCAACCGGAACTCACAAAAACATCCTGACTCCTGCTACAGCAGAAGATTTACGTATGGCAGGAAAGATGAGTCTGAGCCCAACTATTTCTGCTGATGCTGCTGACAGGATCAAAGCAGTCCAGGTAAAAGTGCCGGTGGTAGCCACGGTTATACAGAATATAGATTCTGatgggaaaataaatttcattgtcgaACCACCCGGACCCGAGAACGAACACGAAAGCTTGGTCACGGCATTGGATTCTCAGTTCACGTACAGTGAGCCGGCTAGAAACGAGCCTGATCGCCAGAATGGTACTGTTGTATCCTCGGCGATGGAGGATTGCAACGAGTTACTGGAACTGGCCGCCCAGGGTGGAATACAGTTCGTGCGCGCTACCGAGGATGGTCGTTACGAGGTAATGACGAACAGCGAAGCTCGCGATCTAATGGCACAGAATTCACATGACGTGACCATTCTTGAGGGTGAGGATGCGGACGCGATCAATGTTGTGAATATGCGCGGTAATGGGGAAGTTATTATCGGGGATTCCGATAATCAGATCATGGTGCTCGATTCTGGTTCCACGCAGAAATCCATGCCGATAGACGGAATTGAGATCCTAGAGGACAAGGACATCCGGATTCTCGACAGCAAAAGCCTCGATGATCGTTTCGTCGATGGTATTAGTTTCCTTTCGCAATCGAAAATCGACGATCTAATTTTAGGCCCTAAATCTCTGTCCATCGACGGCGGAGTTACTGTTAACGAGCACGAAGATGAAGCCATAGCAGTGCCTTCGAGTCAACAAGAATTAACAAACATTCTTAGTCATAGAAGCGACATTTCGACTCTGTCGACTACCTCTCAGCCTTCGATATCGtctttattaatgaaaaatcattcatcGTTGTCGATTTTGAACGACACACTTCCATATCTGAAAAGCAATACCAGCTTAGTCGAAGATCTTAATATACTGGGTAGCTCGACACTGGACGATCATCATTCCGTGTACGAATCGAAGATAAAATTGCCCTCTGTTTTCGATGACACTGAACCTGATACTGGTCTAATATCTATTAGTCAGTCGGATATGAAAATTCTTGGATCGGGAAGTTCCAACAAGGTTCTTGGCAATAAATCAAATTGTCTATCGTCATCGAAGTTGTTCCCGGGTCTGAACGAAGTAAAGATTCTGGGTCCGAAAAATCATAGCCAAGAAATAATAACGTCACAATATCAGGACGTAAAACTACTTAGTCCGTACGAGCAGTTTCTTAAGAACACCGCTTCGAACACGAATGGCTGCGACAGCGGCGAACTTAACACGTCTGGTGGATGTAGGAAGGAGGTAAAGATTCTGGGCAAGAAGTTGGGAACTGGCATTATTACCAGCACAGAGGAAGGCAACGTCGTGGAAGTCATCGAGGAGAAAACTAAGCTGATGATGGATGGCGGAGGAGGACTATGCAACAACTCAGACAACACGGTGATCTCGTCACTCCGATTGGACAGGCAGATCACGGAAAACGGTGGACCAGACAGTTTCTTGCTCCAAGCCTGTAGCCCATGTGACACGGactttttgaatttcgagAATCGTTTGAAGGACACGTCACCGGTCGGCCATTTCGAGCGAACCCAGAAGGAACCCAGGGATAGTTTCAGCTCCACCGGTAGCCTTCCCGATCTCGATTGA
Protein Sequence
MSQNNLLQGYNWETPYEDPQVQFTRSIPDEVISVYEVYVKEENAGSEGRNDVTVVSSANDHQLIQGDCMNLNVAIDSEVINIDGAVTKFLGKDAFKYKILDQNVNSPEDNVMVYSHPVVEEPSSSSTRLIDKDDPRSKLHFVKYLKRDGKTLKIWECGICSKEFRHQYTLMRHLPTHTDERNFKCEACGKAFRQLSTLSQHKAIHSDARPYVCEFCKKTFNRVSTLISHRKTHSEHKPHKCQVCGKGFHQKGNLRNHVFTHTNERPYKCELCGKGFNQMSNLVCHKVKAHAHAEKMQHVCGICGKEFPRRFSLRSHEEYKHGIKYRHPAGVQPSINDPNVIRNKNVRIVQLPNGDRNQTIEVRDKDPLMSDVMEPVVINKIDTKAMEMALIEGQTPFALFKPAKGIPVLVKVSSTGTHKNILTPATAEDLRMAGKMSLSPTISADAADRIKAVQVKVPVVATVIQNIDSDGKINFIVEPPGPENEHESLVTALDSQFTYSEPARNEPDRQNGTVVSSAMEDCNELLELAAQGGIQFVRATEDGRYEVMTNSEARDLMAQNSHDVTILEGEDADAINVVNMRGNGEVIIGDSDNQIMVLDSGSTQKSMPIDGIEILEDKDIRILDSKSLDDRFVDGISFLSQSKIDDLILGPKSLSIDGGVTVNEHEDEAIAVPSSQQELTNILSHRSDISTLSTTSQPSISSLLMKNHSSLSILNDTLPYLKSNTSLVEDLNILGSSTLDDHHSVYESKIKLPSVFDDTEPDTGLISISQSDMKILGSGSSNKVLGNKSNCLSSSKLFPGLNEVKILGPKNHSQEIITSQYQDVKLLSPYEQFLKNTASNTNGCDSGELNTSGGCRKEVKILGKKLGTGIITSTEEGNVVEVIEEKTKLMMDGGGGLCNNSDNTVISSLRLDRQITENGGPDSFLLQACSPCDTDFLNFENRLKDTSPVGHFERTQKEPRDSFSSTGSLPDLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01169399;
90% Identity
iTF_00676240;
80% Identity
-