Basic Information

Insect: Melipona beecheii
Gene Symbol: gtf3a
Assembly: GCA_032399605.1
Location: JAUCMO010000504.1:2828683-2833031[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 6.7e-05 0.0055 17.2 0.1 2 23 728 749 727 749 0.97

2 16 1.7 1.4e+02 3.3 1.8 3 23 783 803 782 803 0.97

3 16 0.00027 0.022 15.3 1.2 3 23 812 833 811 833 0.98

4 16 0.0027 0.23 12.1 2.0 1 23 840 863 840 863 0.95

5 16 9.7e-05 0.0079 16.7 0.7 1 23 869 892 869 892 0.94

6 16 1.3 1.1e+02 3.7 2.5 2 23 900 920 900 920 0.94

7 16 1.4e-07 1.2e-05 25.6 2.1 2 23 926 947 925 947 0.97

8 16 5.2e-06 0.00043 20.7 0.3 1 23 953 975 953 975 0.99

9 16 0.00057 0.047 14.3 2.4 2 23 987 1009 986 1009 0.95

10 16 0.008 0.66 10.7 2.5 1 23 1015 1038 1015 1038 0.96

11 16 0.026 2.1 9.1 3.8 3 23 1061 1082 1060 1082 0.95

12 16 0.0013 0.1 13.2 1.4 2 23 1089 1111 1088 1111 0.96

13 16 0.00015 0.012 16.1 1.6 2 23 1119 1140 1118 1140 0.96

14 16 0.0012 0.1 13.2 2.3 1 23 1146 1169 1146 1169 0.96

15 16 0.33 27 5.6 3.2 2 23 1176 1197 1175 1197 0.96

16 16 0.0097 0.8 10.4 2.6 1 23 1203 1225 1203 1225 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	6.7e-05	0.0055	17.2	0.1	2	23	728	749	727	749	0.97
2	16	1.7	1.4e+02	3.3	1.8	3	23	783	803	782	803	0.97
3	16	0.00027	0.022	15.3	1.2	3	23	812	833	811	833	0.98
4	16	0.0027	0.23	12.1	2.0	1	23	840	863	840	863	0.95
5	16	9.7e-05	0.0079	16.7	0.7	1	23	869	892	869	892	0.94
6	16	1.3	1.1e+02	3.7	2.5	2	23	900	920	900	920	0.94
7	16	1.4e-07	1.2e-05	25.6	2.1	2	23	926	947	925	947	0.97
8	16	5.2e-06	0.00043	20.7	0.3	1	23	953	975	953	975	0.99
9	16	0.00057	0.047	14.3	2.4	2	23	987	1009	986	1009	0.95
10	16	0.008	0.66	10.7	2.5	1	23	1015	1038	1015	1038	0.96
11	16	0.026	2.1	9.1	3.8	3	23	1061	1082	1060	1082	0.95
12	16	0.0013	0.1	13.2	1.4	2	23	1089	1111	1088	1111	0.96
13	16	0.00015	0.012	16.1	1.6	2	23	1119	1140	1118	1140	0.96
14	16	0.0012	0.1	13.2	2.3	1	23	1146	1169	1146	1169	0.96
15	16	0.33	27	5.6	3.2	2	23	1176	1197	1175	1197	0.96
16	16	0.0097	0.8	10.4	2.6	1	23	1203	1225	1203	1225	0.98

Sequence Information

Coding Sequence: ATGAAgcacattgaaattaaaaacaagGATCATAATTATAGCGAAGTAAAATTACGTAATCTCCAGCATGTTACTGGCAATATTCTAAATGTATGCGACAATGATATTAAAACAGTATGTAAATCAAACAAATCTGGTATAATATCAAACAAAGAGACATTTGGTCagattaaagatattaatgaATTGAAGAAAATCACGCCACGTGTGAAACTATTGACTCATGATGCAAATAGTTTAAATGAATTGACTAAAATTTCCTTGCACAATAAAATATCTgcacaaaagaaattatcgatattgGAGCAAACGAAACAGGAGTTGAAAAAGTATTGCAGAACTTGTGCTGGCTTAAAACTTCCATTAGTTGATATTTTTAGTGAAAAAGGTAATCAAATGAGATTAAGCCAACAAATTAGACATTTAGAGGACATAAATCAGTATGACAGCTTATCGACTCAAATGTGCATGGATTGTATTTGTGACTTGAAAATGAGTTATAagttttttatgcaaattaagaAAGCAgaagttaaattgaaatccATTCACATTACTCTGACTGATACGGCAACAAGAAACATGGAATTGAATAAAACGAAGCCTGTAGCAAGTCTTGAAAAACAAGTGGAAAATATTGCTGAAAGCAATGTCAAAAGTCCATCTAcaagtaaagaaaataatgaaaatgttcCAAAAATGTCTGCAAGGTTCTCATTAAAAGATGATAAAGTACTTGAAAAAAACGTTCGGAAAGTAAATCATAAAGAGTCAGAAAGTAAAGTTGAAGTTGAGATTTTTGAAGAGTCAACTATTCTACAAAATAGTGATGATAATGAGTCTATAGAAGAATTTGATCCAGACGATCCTCCTTTTCAACCTGATAGCTCTGATGTAGCAGAATCTGATGATGAAGTAGAGATACCAAAAAGACGACATATTCAACAGAAGGAAAGTATGAAACAATGTTCACAATCATCTTCTGTTTCTGATAATAATTCAATCtcggataataaaaatatcgacatAAAGCAAACaacatataattatgataCTTGTCTAAAAacatatgttaaaataaaggATACAGATTGTAATAATCAATCTACTGAGTTACACAGCATTATTCATTCTGAAACTGCTATATATAATACTGAAAGTACAAAAGAATGTTCAAAACAaccaaatatattaaaacgcAGGTTATTACAATCTAAAAAAGAGTCTGCAGAAGAAACCGATGAAAATTGTCAGTCaaatatttctgataaatGTGGAAGCCATAAGgatttaaaagtacaaaaactTGATGTAAACAATTCTTTAAACAGTAATCAAGAGGATGGGATTATGTATGTTACTGTGAAGGGATCTAAaccaaatgaaatattgttagtaaaagttaaaaaaatggaaaaatcattagaaaagaaagatgatAAATCTgtagggaaaaaaaattttgatattaaaccaatggacaaaattttaaaacgatatGAAACATTAGttacaaaagagaaagatttatttccagagcgaacaaaaaaatcagaaataagAGAACAGATTATAGAAGAACAAATAGaagaatataagaaaaagcgagaaaaagtATTAGGTGGGCATGCTAATATTGTTGCACTTCCAAAACTTGAAGAATCTCGTTGTTTTAAACGTATTGAAAATCAAGATAATCAAAGATCTCTTGCTGTAGAAAGTGATTCTGTTGTAAATGTACAGTTTAATAAAGATGATGGTGAATTGAATGCAACTACTAATAGTGAAGatgatatttcagaaatttccgAATCAGCCAAAGAAAAGTctacaaatgaaaaaacataTGTAAATACTGAAGAATATTTGTCACATTTAGCAAAACTTAAATTGAAATGGgaagaagcaaaaaagaaaaaagagtcaCTTCAAAAGGAACTAGATGAATCTTATACAGAAggaaatattgagaaattaacaagaattttaggagaaaaagaaaaaaacttgcaAGATTTCCAAGATTATCTGAAACaacgtaaaattgtaattacaagaTTAAAAGATGAAGACATCATTTCTCTTTACGAAGATAGAAACAATGCAGTGCTTAAAAACAGTTTACCTGACTTAATAGATGAAAGTCAACCGGCAGATTATATTCCAGAAGAACATTATTTAGAATGTGATTATTGTCCAGAGACATTTGCTTCTAAAGAAGTTCTTGAAGAACATTTGAAAACGcatgattataaaattatgcatTTTTGCGAAGATTGTATGGAAGAATTTCCAACAAATAAAGCAAAACGAAATCATAATGtaatttgtatgaaaaaattactatgtaaatattgtaacatgATGTTGGattcaaaaggaaaaaagcgtCAGCATGAACAAAAACATTGTGATAATATGTATGGACAATTATGTGATGTATGtggtgaaaaatttaaacatcaaGGAACATTGGATCAACATGTAAAAACACAACACATGAGTtgggaaaaaatatatcaatgtCCAAAGTGTCCTAAAAAGTTTGCATTCAAACAAAAACTTagttttcatttgaaatctGTACACACAACATTAAGGGCCTATTTATGCGAGGATTGTGGAGCTGATTTTAAAAATCCTGCAAGTCTGAGACATCATAGAATACGTAAACATCAACCTGTAGGTAATAAAAGAGAATGTCCAGTATGTCATAAATTAGTACCATTTTATAGCCTTTCTAAACACATGCATACTCATAAAGCATATACTATTCAGTGTCCACACTGTgacaaaatgtttaaaaatagttCAACTTTAAAACAACATGTGAGAATTCATGAAGACCAGCGTCAATATCGATGTGATACTTGTGGTGTTGGATTTAATAGACGAGATGGCTTAAGGTTACACATGAAAGTGCATGAAAAAACTGATAGTAGAGGATTAAAAGAATGTTCGTGTCAAGTGTGTGGTGAAAAGTTTCCAAATCATTCAACACTTGTTATACATAGAAACCGAGTTCATAAAGATGGAAGGCAATATACTTGTCATATATGTAACAGATCGATGATTTCAACTAGATCGTTAGAGTGGCATATGTCTCATATACACAATGAATCACTTCCTGGTGTTGTAAAAGAAGATATAGATGGACCACCAGAAAAGAAGAGAGCATCGTGTTATCATTGTAATAAGACATTCAAAACAGAAATGATTTTGAGAacacatattaaaaatacacatatGGAGAAAGATCCTATGAAGTGTTTAGACTGTGAATTAACATTTACTTCTGAAGTTAGATTAAGACATCATATGATGATCACACACAATAGATTAGAAGGAACTTTGCCTTGTTCACATTGTCCAAAGAGGTTTGTGAATCAACTCAGATTAAAAACTCATATGATATCCCATTCTGAAGAAAGGCCATATACTTGTGAAATCTgtggatttaatttaaaaactaaaatacaGTTGATAAAGCATCATCAAAATAGGCATAGCGATGAAAGACCTTTACAGTGTAGATATTGTCCTTGGAGATGTAAACAAGTTAGCGCTCTTGTATGTCATGAAAGAACTCATACAAATGAAAGACCATATTCTTGTAGCGTGTGTAGAcaacgttttaaatatttaggtgataaaaataaacacgAAAGACGACATGAAAGCTTAGGAGGATCTGGATTTAAAAGAATAGTACTTGGTCGAAACATCAAAGCTACTAAAGTACAGGAAGATTCTTCTTGTTCTGAACATGAGcaagaaagtttaaataataCGGAATCTCAAGTTCCTGAAAGTGAATATCAAGAACAGACAGATCAACAATTTGAGGAAGAGcaaatagtaaaatttgaagaagaacAAATAGTGAAGTTTGAAGAAGAACAGATAGTTAAATTCGAAGAAGAACAAATTGTTAAGTTTGAAGAACAAGAAATAACAGAAGAGTATGAACAAGTATATGAACAGGAATATGAAGAGACATCTAGAGAGGCTTCGGATGCAGCAGAAGTTATAATGAACATGGAAGATACTACTGTTTACACAGAAGAAGTAACTACAGATAATATTGAACCTACAGAAATTATGGCAGATGAAATGATGACAAATGAGATATTACAATCAGGTGCTGTAGTTCATTTGCAACAAGAAGATGATTCAGGGAAAATACAAGTGATTCCAGTGATGTTATCTTTACCTGATTTATCTGATGCAAATACAGAGGTCAATTTAGCTACTGCAtctattatgtataataattga
Protein Sequence: MKHIEIKNKDHNYSEVKLRNLQHVTGNILNVCDNDIKTVCKSNKSGIISNKETFGQIKDINELKKITPRVKLLTHDANSLNELTKISLHNKISAQKKLSILEQTKQELKKYCRTCAGLKLPLVDIFSEKGNQMRLSQQIRHLEDINQYDSLSTQMCMDCICDLKMSYKFFMQIKKAEVKLKSIHITLTDTATRNMELNKTKPVASLEKQVENIAESNVKSPSTSKENNENVPKMSARFSLKDDKVLEKNVRKVNHKESESKVEVEIFEESTILQNSDDNESIEEFDPDDPPFQPDSSDVAESDDEVEIPKRRHIQQKESMKQCSQSSSVSDNNSISDNKNIDIKQTTYNYDTCLKTYVKIKDTDCNNQSTELHSIIHSETAIYNTESTKECSKQPNILKRRLLQSKKESAEETDENCQSNISDKCGSHKDLKVQKLDVNNSLNSNQEDGIMYVTVKGSKPNEILLVKVKKMEKSLEKKDDKSVGKKNFDIKPMDKILKRYETLVTKEKDLFPERTKKSEIREQIIEEQIEEYKKKREKVLGGHANIVALPKLEESRCFKRIENQDNQRSLAVESDSVVNVQFNKDDGELNATTNSEDDISEISESAKEKSTNEKTYVNTEEYLSHLAKLKLKWEEAKKKKESLQKELDESYTEGNIEKLTRILGEKEKNLQDFQDYLKQRKIVITRLKDEDIISLYEDRNNAVLKNSLPDLIDESQPADYIPEEHYLECDYCPETFASKEVLEEHLKTHDYKIMHFCEDCMEEFPTNKAKRNHNVICMKKLLCKYCNMMLDSKGKKRQHEQKHCDNMYGQLCDVCGEKFKHQGTLDQHVKTQHMSWEKIYQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECPVCHKLVPFYSLSKHMHTHKAYTIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMKVHEKTDSRGLKECSCQVCGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISTRSLEWHMSHIHNESLPGVVKEDIDGPPEKKRASCYHCNKTFKTEMILRTHIKNTHMEKDPMKCLDCELTFTSEVRLRHHMMITHNRLEGTLPCSHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVLGRNIKATKVQEDSSCSEHEQESLNNTESQVPESEYQEQTDQQFEEEQIVKFEEEQIVKFEEEQIVKFEEEQIVKFEEQEITEEYEQVYEQEYEETSREASDAAEVIMNMEDTTVYTEEVTTDNIEPTEIMADEMMTNEILQSGAVVHLQQEDDSGKIQVIPVMLSLPDLSDANTEVNLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00684931;
90% Identity: iTF_01417867;
80% Identity: -